View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5022_low_9 (Length: 475)

Name: NF5022_low_9
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5022_low_9
NF5022_low_9
[»] chr5 (5 HSPs)
chr5 (126-322)||(22620828-22621024)
chr5 (1-73)||(22621388-22621460)
chr5 (162-281)||(31270836-31270955)
chr5 (147-180)||(24005206-24005239)
chr5 (341-409)||(31270220-31270288)
[»] chr6 (6 HSPs)
chr6 (126-322)||(15148273-15148468)
chr6 (2-73)||(15147622-15147693)
chr6 (147-185)||(7814823-7814861)
chr6 (147-193)||(14435837-14435883)
chr6 (327-368)||(15149335-15149376)
chr6 (148-204)||(7806063-7806119)
[»] chr7 (1 HSPs)
chr7 (147-293)||(8793807-8793953)
[»] scaffold1089 (1 HSPs)
scaffold1089 (147-193)||(863-909)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 126 - 322
Target Start/End: Complemental strand, 22621024 - 22620828
Alignment:
Q  126 tcatattaactatataatgtgaacctttctaattaaaagaatttgaagcttgggagaatgttggagcacttttgctacattattccagctatggtcatag 225  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22621024 tcatattaactatatagtgtgaacctttctaattaaaagaatttgaagcttgggagaatgttggagcacttttgctacattattccagctatggtcatag 22620925  T
Q  226 tccgaaaatagtatttcaaggtgaattaagttacaaaaaacaggaaagtctttgtaataggcattgatgtttttgttgtgatcaatctcttccatct 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22620924 tccgaaaatagtatttcaaggtgaattaagttacaaaaaacaggaaagtctttgtaataggcattgatgtttttgttgtgatcaatctcatccatct 22620828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 22621460 - 22621388
Alignment:
Q  1 caggaaccaaatttgggctttcccagacttttctatatgtgtaatagttgctgcttctctgtcaaaggaagtc 73  Q
    |||||| | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  22621460 caggaatcgaatttgggctttcccaatcttttctatatgtgtaatagttgctgcttctctgtcaaaggaagtc 22621388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 281
Target Start/End: Complemental strand, 31270955 - 31270836
Alignment:
Q  162 aagaatttgaagcttgggagaatgttggagcacttttgctacattattccagctatggtcata--gtccgaaaatagtatttcaaggtgaattaagttac 259  Q
    ||||||||||| |||||||||||||||||||| || |||||||| || ||||   ||| ||||  |||| ||||||||| ||||| |||||||||||||     
T  31270955 aagaatttgaaacttgggagaatgttggagcaattctgctacat-atcccaggcttgggcatatagtcccaaaatagtacttcaaagtgaattaagtta- 31270858  T
Q  260 aaaaaacaggaaagtctttgta 281  Q
    ||||||||| ||||||||||||    
T  31270857 aaaaaacagtaaagtctttgta 31270836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 24005206 - 24005239
Alignment:
Q  147 aacctttctaattaaaagaatttgaagcttggga 180  Q
    |||||||||||| |||||||||||||||||||||    
T  24005206 aacctttctaataaaaagaatttgaagcttggga 24005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 409
Target Start/End: Complemental strand, 31270288 - 31270220
Alignment:
Q  341 atcgtcaaagtgtagaatatggagcgactgatagagtgaagcccacctttttgagagaacgctagtagc 409  Q
    ||||||||| | || |||| || |||| ||||||||||||| ||| |||||||| ||||| ||||||||    
T  31270288 atcgtcaaattttataatagggtgcgagtgatagagtgaagtccatctttttgaaagaacactagtagc 31270220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 126 - 322
Target Start/End: Original strand, 15148273 - 15148468
Alignment:
Q  126 tcatattaactatataatgtgaacctttctaattaaaagaatttgaagcttgggagaatgttggagcacttttgctacattattccagctatggtcatag 225  Q
    ||||||||| |||||| | |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  15148273 tcatattaagtatatagtttgaatctttctaattaaaagaatttgaaccttgggagaatgttggagcacttttgctacattacttcagctatggtcatag 15148372  T
Q  226 tccgaaaatagtatttcaaggtgaattaagttacaaaaaacaggaaagtctttgtaataggcattgatgtttttgttgtgatcaatctcttccatct 322  Q
    ||| |||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||    
T  15148373 tcccaaaatagtatttcaaggttaa-taagttataaaaaacaggaaagtctttgtaataggcattgatgtttttgttatgatcagtctcatccatct 15148468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 15147622 - 15147693
Alignment:
Q  2 aggaaccaaatttgggctttcccagacttttctatatgtgtaatagttgctgcttctctgtcaaaggaagtc 73  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||| | |||||||||    
T  15147622 aggaaccaaatttgggttttcccaatcttttctatatgtgtaatagttgctgcttctctggcgaaggaagtc 15147693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 7814861 - 7814823
Alignment:
Q  147 aacctttctaattaaaagaatttgaagcttgggagaatg 185  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  7814861 aacctttttaattgaaagaatttgaagcttgggagaatg 7814823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 14435837 - 14435883
Alignment:
Q  147 aacctttctaattaaaagaatttgaagcttgggagaatgttggagca 193  Q
    ||||||| |||| ||||||||||||||| ||||| ||||||||||||    
T  14435837 aacctttttaatgaaaagaatttgaagcatgggacaatgttggagca 14435883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 368
Target Start/End: Original strand, 15149335 - 15149376
Alignment:
Q  327 tctataacatctttatcgtcaaagtgtagaatatggagcgac 368  Q
    |||||||||||||||||||||| || || |||||||||||||    
T  15149335 tctataacatctttatcgtcaaggtatataatatggagcgac 15149376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 7806063 - 7806119
Alignment:
Q  148 acctttctaattaaaagaatttgaagcttgggagaatgttggagcacttttgctaca 204  Q
    |||||| |||| ||||||||||||||||||||| ||||  |||||| |||| |||||    
T  7806063 acctttttaatgaaaagaatttgaagcttgggacaatggcggagcagttttactaca 7806119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 8793953 - 8793807
Alignment:
Q  147 aacctttctaattaaaagaatttgaagcttgggagaatgttggagcacttttgctacattattccagctatggtcatagt-ccgaaaatagtatttcaag 245  Q
    ||||||||| ||||||||| | ||||| ||||||||||| | ||||| |||||||| ||||| ||||  ||||||| ||| ||||||| | |||||||||    
T  8793953 aacctttctgattaaaagagtctgaagtttgggagaatgcttgagcagttttgctaaattatcccagtcatggtcacagtgccgaaaaca-tatttcaag 8793855  T
Q  246 gtgaattaagttacaaaaaacaggaaagtctttgtaataggcattgat 293  Q
     |||||||| ||   |||||| ||||||||||||||||||| ||||||    
T  8793854 atgaattaatttcttaaaaaccggaaagtctttgtaataggaattgat 8793807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 863 - 909
Alignment:
Q  147 aacctttctaattaaaagaatttgaagcttgggagaatgttggagca 193  Q
    |||||||||||| |||| |||||||||||||||| | ||||||||||    
T  863 aacctttctaataaaaacaatttgaagcttgggacattgttggagca 909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University