View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5023-Insertion-1 (Length: 1108)
Name: NF5023-Insertion-1
Description: NF5023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5023-Insertion-1 |
 | |
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| [»] scaffold0027 (2 HSPs) |
| | |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 680; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 10 - 909
Target Start/End: Original strand, 16509116 - 16510003
Alignment:
| Q |
10 |
tgaaggcatccaacttataccattaatttgtgaccgtttgatccaccctatcccatcaaatatatgcataaattgaaattaatgaaactataataactga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16509116 |
tgaaggcatccaacttataccattaatttgtgaccgcttggtccaccctatcccatcaaatatatgcataaattgaaattaatgaaactataataactga |
16509215 |
T |
|
| Q |
110 |
atgcacaaaattgaaattgtcattggattataaattaattaaaaatagataaagatatgcccgtacaattaagttatnnnnnnnntgaaaatttgtcatg |
209 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
16509216 |
atgcacaaaattgaaattgtcattggatcataaattaattaaaaatagataaagatatgcatgtacaattaagttataaaaaaa-tgaaaatttgtcatg |
16509314 |
T |
|
| Q |
210 |
cgtaacattttaacaccaaatttgactcgaagaagnnnnnnnttaccacaacaagctagatattgtggtaaaacattccacaaaattgttttctaaattt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16509315 |
tgtaacattttaacaccaaatttgactcgaagaagaaaaaaattaccacaacaagctagatattgtggtaaaatattccacaaaattgttttctaaattt |
16509414 |
T |
|
| Q |
310 |
acaaaaatagccttctgtttaaaatgtgaataatagcaagtgggtatttttgtcaaaatcaaaatatgcacatttgctaacttaaaccttaatattttta |
409 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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|
| T |
16509415 |
acaaaaataggcttctgtttaaaatgtgaatagtagcaagtgggtatttttgtcaaaatcaaaagatgcacacttgctaacttaaaccttaatattttta |
16509514 |
T |
|
| Q |
410 |
gaccaacttaaaataattaaggtctaagttagcaagtgttcactttttcattcagacnnnnnnn-ctactttccccattcaaccaatttaaaataaagaa |
508 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
16509515 |
gaccaacttaaaatatttaagatctaagttagcaagtgttcactttttcattcagacaaaaaaaactacttgccccattcaaccaatttaaaataaagaa |
16509614 |
T |
|
| Q |
509 |
tgatttagtaattgcactaaattttatttttcaataaaacattccaatttttccctaaatttgctaaataatcttatgtttaaaatttgttagaatagta |
608 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
16509615 |
taatttagtaattacactaaattttatttttcaataaaacattccaatttttccctaaatttactaaataatcttatgtttaaaatttgttagaatagta |
16509714 |
T |
|
| Q |
609 |
acaagtgtgtattttttgttggtctatatgacgaaggcaacaatgagctagggagggggtgaatagcttttccgtttaaaattgtttcaaaagtgtagtt |
708 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16509715 |
acaagtgtgtattttttgttggtcaatatgacaaaggcaacaatgagttagggagggggtgaatagcttttccgtttaaaattgtttcaaaagtgtagtt |
16509814 |
T |
|
| Q |
709 |
ctgatcaagcgaatagctatttgaaatcgtacattgaatacaaatgataaaaggataaacaatgcataaaaaggcaattcaatttgaacgagaaattcgc |
808 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16509815 |
ctgatcaagtgaatggctatttgaaatcgtacattgaatacaaatgataaaaggataaacaatgcataaaaaggcaattcaatttgaacgagaaattcgc |
16509914 |
T |
|
| Q |
809 |
acttgaattgcaataagagcaataagacagtactatagtattattactcaagataatccacaaaacacttaattatttaaacctaatatttagcaagaaa |
908 |
Q |
| |
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||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16509915 |
acttgaatt---------gcaataagacagtac---attattattactcaagataatcaacaaaacacttaattatttaaacctaatatttagcaagaaa |
16510002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 60; Significance: 5e-25; HSPs: 2)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 278 - 410
Target Start/End: Original strand, 39894 - 40030
Alignment:
| Q |
278 |
taaaacattccacaaaattgttttctaaatttacaaaaatagccttctgtttaaaat----gtgaataatagcaagtgggtatttttgtcaaaatcaaaa |
373 |
Q |
| |
|
||||||||| | |||| ||||||||||||||||||||||| |||| |||||||||| |||||| || ||| || ||||||||||||||||||||| |
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|
| T |
39894 |
taaaacattttaaaaaactgttttctaaatttacaaaaataaccttttgtttaaaatttggttgaatagtaacaaatgtgtatttttgtcaaaatcaaaa |
39993 |
T |
|
| Q |
374 |
tatgcacatttgctaacttaaaccttaatatttttag |
410 |
Q |
| |
|
| |||||| ||||||||||| |||||||| ||||||| |
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|
| T |
39994 |
tgtgcacacttgctaacttagaccttaatgtttttag |
40030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 574 - 624
Target Start/End: Original strand, 39930 - 39980
Alignment:
| Q |
574 |
aaataatcttatgtttaaaatttgttagaatagtaacaagtgtgtattttt |
624 |
Q |
| |
|
|||||| ||| ||||||||||||| | |||||||||||| ||||||||||| |
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|
| T |
39930 |
aaataaccttttgtttaaaatttggttgaatagtaacaaatgtgtattttt |
39980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 489 - 624
Target Start/End: Complemental strand, 41218685 - 41218543
Alignment:
| Q |
489 |
aaccaatttaaaataaagaatgatttagtaatt---gcactaaattttatttttcaataaaacattccaa---tttttccctaaattt-gctaaataatc |
581 |
Q |
| |
|
|||||||||||||||||| || ||||||||| | ||||| | ||||||||||||||||||||||||| || || ||||||||| | |||||| | |
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|
| T |
41218685 |
aaccaatttaaaataaaggataatttagtaaattgcgcactctactttatttttcaataaaacattccaaaaattatttcctaaatttagaaaaataacc |
41218586 |
T |
|
| Q |
582 |
ttatgtttaaaatttgttagaatagtaacaagtgtgtattttt |
624 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| || |||||||| |
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| T |
41218585 |
ttatgtttaaaatttgtttgaatattaacaaatgcgtattttt |
41218543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 390
Target Start/End: Complemental strand, 41218628 - 41218513
Alignment:
| Q |
278 |
taaaacattccacaaaattgttttctaaatttacaaaaatagccttctgtttaaaatgtg----aataatagcaagtgggtatttttgtcaaaatcaaaa |
373 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||| ||||||| |||| |||||||||| || |||| || ||| || |||||||||| |||| |||| |
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|
| T |
41218628 |
taaaacattcca-aaaattatttcctaaatttagaaaaataaccttatgtttaaaatttgtttgaatattaacaaatgcgtatttttgttcaaataaaaa |
41218530 |
T |
|
| Q |
374 |
tatgcacatttgctaac |
390 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
41218529 |
tatgcacacttgctaac |
41218513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 492 - 623
Target Start/End: Original strand, 12324003 - 12324140
Alignment:
| Q |
492 |
caatttaaaataaagaatgatttagtaa-ttgcactaaatttt-atttttcaataaaacattc---caatttttccctaaatttgc-taaataatcttat |
585 |
Q |
| |
|
||||||||||||||| || ||||||||| || |||| |||||| ||||||| ||||||||||| ||| |||| ||| ||| | | |||||| ||| | |
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|
| T |
12324003 |
caatttaaaataaaggataatttagtaaattacacttaatttttatttttcgataaaacattccaacaactttttcctcaatatacaaaaataacctttt |
12324102 |
T |
|
| Q |
586 |
gtttaaaatttgttagaatagtaacaagtgtgtatttt |
623 |
Q |
| |
|
||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
12324103 |
gttgaaaatttgtttgaatagtaacaagtgagtatttt |
12324140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 410
Target Start/End: Complemental strand, 12323976 - 12323922
Alignment:
| Q |
356 |
tttttgtcaaaatcaaaatatgcacatttgctaacttaaaccttaatatttttag |
410 |
Q |
| |
|
|||||||| |||| |||| ||||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
12323976 |
tttttgtccaaataaaaaaatgcacacttgttaacttaaatcttaatatttttag |
12323922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 390 - 599
Target Start/End: Original strand, 112948 - 113164
Alignment:
| Q |
390 |
cttaaaccttaatatttttagaccaacttaaaataattaaggtctaagttagcaagtgttcactttttcattcagacnnnnnnnctactttccccattc- |
488 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||| | ||| ||||||||||||| |||||| ||| |||||||| || | || | |||||||| |
|
|
| T |
112948 |
cttagacctgaatgtttttagaccaacttaacaacattgaggtctaagttagaaagtgtgcacattttcatttggataaaaaatcaacataccccattca |
113047 |
T |
|
| Q |
489 |
aaccaatttaaaataaagaatgatttagt-aattgcact-aaattttatttttcaataaaacattccaa----tttttccctaaatttgctaaataatct |
582 |
Q |
| |
|
|||||||||||||| ||| || ||||| | ||||||||| || |||||||||||||| |||| |||||| || ||||| || ||| ||||||||| |
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|
| T |
113048 |
aaccaatttaaaatcaaggataatttaataaattgcactcaacttttatttttcaattaaacgttccaaaatcttgttcccaaatttttaaaaataatct |
113147 |
T |
|
| Q |
583 |
tatgtttaaaatttgtt |
599 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
113148 |
tctgtttaaaatttgtt |
113164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 390 - 461
Target Start/End: Original strand, 116556 - 116627
Alignment:
| Q |
390 |
cttaaaccttaatatttttagaccaacttaaaataattaaggtctaagttagcaagtgttcactttttcatt |
461 |
Q |
| |
|
|||| |||| ||| ||||| ||||||||||||| ||| ||||||||||||| |||||| ||| |||||||| |
|
|
| T |
116556 |
cttagacctgaatgttttttgaccaacttaaaaacattgaggtctaagttagaaagtgtgcacattttcatt |
116627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 332
Target Start/End: Original strand, 42035470 - 42035522
Alignment:
| Q |
278 |
taaaacattccacaaaattgttttctaaatttacaaaaatagccttctgtttaaa |
332 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
42035470 |
taaaacattcca-aaaattgttttc-aaatttacaaaaataatcttctgtttaaa |
42035522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 42921693 - 42921729
Alignment:
| Q |
280 |
aaacattccacaaaattgttttctaaatttacaaaaat |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42921693 |
aaacattcca-aaaattgttttctaaatttacaaaaat |
42921729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 16638 - 16602
Alignment:
| Q |
280 |
aaacattccacaaaattgttttctaaatttacaaaaat |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16638 |
aaacattcca-aaaattgttttctaaatttacaaaaat |
16602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 407 - 444
Target Start/End: Complemental strand, 25156376 - 25156339
Alignment:
| Q |
407 |
ttagaccaacttaaaataattaaggtctaagttagcaa |
444 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25156376 |
ttagaccaacttaaaaatattaaggtctaagttagcaa |
25156339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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