View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5023-Insertion-10 (Length: 572)

Name: NF5023-Insertion-10
Description: NF5023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5023-Insertion-10
NF5023-Insertion-10
[»] chr7 (19 HSPs)
chr7 (211-524)||(10599716-10600025)
chr7 (335-524)||(14568350-14568539)
chr7 (93-194)||(10600410-10600511)
chr7 (335-493)||(41508093-41508251)
chr7 (335-417)||(42935447-42935529)
chr7 (438-524)||(10409789-10409877)
chr7 (342-488)||(14650104-14650247)
chr7 (391-493)||(14658771-14658873)
chr7 (405-488)||(13777702-13777786)
chr7 (335-493)||(20949066-20949223)
chr7 (343-415)||(17757486-17757558)
chr7 (10-49)||(10600627-10600666)
chr7 (347-476)||(46341502-46341631)
chr7 (343-430)||(37048576-37048663)
chr7 (335-372)||(17205122-17205159)
chr7 (448-526)||(42935834-42935913)
chr7 (339-384)||(29808443-29808488)
chr7 (337-477)||(12506703-12506843)
chr7 (441-493)||(45072515-45072567)
[»] chr1 (18 HSPs)
chr1 (335-493)||(17971359-17971517)
chr1 (335-524)||(32715686-32715874)
chr1 (336-524)||(27442338-27442525)
chr1 (336-522)||(28723932-28724117)
chr1 (336-493)||(3574720-3574879)
chr1 (350-493)||(13603078-13603224)
chr1 (335-484)||(36437205-36437354)
chr1 (448-524)||(45691567-45691643)
chr1 (339-493)||(9851810-9851963)
chr1 (346-484)||(39150187-39150324)
chr1 (335-524)||(28165091-28165280)
chr1 (408-493)||(42454869-42454954)
chr1 (335-484)||(42745537-42745685)
chr1 (343-493)||(31181048-31181199)
chr1 (339-425)||(17988348-17988434)
chr1 (338-493)||(31152431-31152584)
chr1 (338-372)||(31003698-31003732)
chr1 (340-493)||(46443700-46443851)
[»] chr2 (25 HSPs)
chr2 (340-524)||(14200333-14200516)
chr2 (342-524)||(7011095-7011274)
chr2 (347-524)||(32872346-32872523)
chr2 (347-493)||(31404951-31405096)
chr2 (335-493)||(38214106-38214264)
chr2 (336-493)||(39063591-39063748)
chr2 (335-493)||(40442711-40442869)
chr2 (335-493)||(40503868-40504026)
chr2 (339-493)||(38496470-38496624)
chr2 (408-493)||(44173636-44173721)
chr2 (353-523)||(2287486-2287654)
chr2 (335-493)||(3268791-3268949)
chr2 (335-493)||(3269350-3269508)
chr2 (335-493)||(3269909-3270067)
chr2 (353-436)||(34262721-34262803)
chr2 (441-524)||(34309311-34309394)
chr2 (353-523)||(2315509-2315677)
chr2 (336-477)||(16781256-16781396)
chr2 (343-493)||(4015785-4015934)
chr2 (336-493)||(40664228-40664386)
chr2 (403-524)||(45723883-45724004)
chr2 (335-433)||(3711895-3711992)
chr2 (420-493)||(21794914-21794988)
chr2 (335-372)||(21794849-21794886)
chr2 (336-387)||(35310800-35310852)
[»] chr8 (15 HSPs)
chr8 (335-524)||(38209485-38209674)
chr8 (335-524)||(36408151-36408339)
chr8 (335-484)||(36054809-36054958)
chr8 (395-524)||(5923871-5924004)
chr8 (335-493)||(8251229-8251387)
chr8 (336-493)||(31658847-31659003)
chr8 (336-493)||(2207766-2207921)
chr8 (391-493)||(2152369-2152472)
chr8 (336-493)||(16890265-16890425)
chr8 (338-493)||(1445349-1445504)
chr8 (420-493)||(30653628-30653701)
chr8 (335-389)||(21504882-21504936)
chr8 (337-430)||(30112485-30112578)
chr8 (394-430)||(4641095-4641131)
chr8 (336-371)||(35431579-35431614)
[»] chr4 (12 HSPs)
chr4 (343-524)||(25376810-25376991)
chr4 (335-484)||(18838745-18838893)
chr4 (336-436)||(54863918-54864018)
chr4 (343-441)||(21128097-21128195)
chr4 (392-524)||(25382400-25382531)
chr4 (391-493)||(31707349-31707448)
chr4 (341-484)||(16572251-16572391)
chr4 (337-430)||(33721675-33721768)
chr4 (336-473)||(34319546-34319682)
chr4 (335-430)||(44884411-44884507)
chr4 (335-492)||(42312399-42312564)
chr4 (343-417)||(47231644-47231718)
[»] chr3 (23 HSPs)
chr3 (335-524)||(30041272-30041460)
chr3 (395-523)||(35104722-35104850)
chr3 (347-430)||(49983561-49983644)
chr3 (335-493)||(41559980-41560132)
chr3 (403-493)||(43105144-43105234)
chr3 (335-493)||(45261357-45261512)
chr3 (335-493)||(40344929-40345085)
chr3 (343-484)||(22923629-22923773)
chr3 (420-524)||(49983786-49983892)
chr3 (375-506)||(30577821-30577952)
chr3 (343-413)||(43105935-43106004)
chr3 (337-493)||(17003574-17003729)
chr3 (336-445)||(32211834-32211943)
chr3 (339-506)||(24650120-24650285)
chr3 (336-493)||(8825356-8825511)
chr3 (335-472)||(38854607-38854744)
chr3 (344-457)||(25295085-25295198)
chr3 (335-484)||(46918469-46918617)
chr3 (336-493)||(35455302-35455455)
chr3 (368-477)||(49787770-49787879)
chr3 (335-427)||(43320194-43320286)
chr3 (439-493)||(42279233-42279287)
chr3 (189-221)||(2567789-2567821)
[»] chr6 (9 HSPs)
chr6 (353-524)||(9425503-9425675)
chr6 (350-493)||(6657887-6658029)
chr6 (335-524)||(19780224-19780413)
chr6 (336-493)||(180334-180491)
chr6 (380-493)||(34837147-34837260)
chr6 (335-484)||(606623-606772)
chr6 (343-430)||(1856752-1856839)
chr6 (438-493)||(12143716-12143771)
chr6 (290-322)||(30627822-30627854)
[»] scaffold0015 (1 HSPs)
scaffold0015 (335-521)||(38802-38987)
[»] scaffold0006 (1 HSPs)
scaffold0006 (350-493)||(131735-131881)
[»] scaffold0836 (1 HSPs)
scaffold0836 (335-484)||(3015-3164)
[»] scaffold1809 (1 HSPs)
scaffold1809 (336-484)||(503-651)
[»] scaffold0088 (1 HSPs)
scaffold0088 (335-493)||(51266-51424)
[»] chr5 (13 HSPs)
chr5 (397-493)||(11691056-11691152)
chr5 (340-484)||(27193009-27193153)
chr5 (342-488)||(17693562-17693705)
chr5 (339-387)||(1962962-1963010)
chr5 (345-448)||(3257251-3257354)
chr5 (337-477)||(6688782-6688924)
chr5 (335-493)||(18704992-18705150)
chr5 (339-484)||(3629215-3629360)
chr5 (343-494)||(17686233-17686384)
chr5 (381-484)||(2225619-2225722)
chr5 (362-457)||(11983614-11983709)
chr5 (335-370)||(23010685-23010720)
chr5 (408-484)||(14917792-14917865)
[»] scaffold0024 (1 HSPs)
scaffold0024 (335-491)||(154333-154489)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 211 - 524
Target Start/End: Complemental strand, 10600025 - 10599716
Alignment:
Q  211 atttattttttgttgtagaatcattaacatgtgctcaaataaaaattgttactataatttttaatttctaatgtgataatactcactccggtctcattta 310  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||| ||||||    
T  10600025 atttattttttgttctagaatcattaac--gtgctcaaataaaaattgttaatgtcaattttaatttctaatgtgataatactcactccggtcccattta 10599928  T
Q  311 taagaaaaatttnnnnnnnnnnnntttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatt 410  Q
    |||||||| |||            ||  ||||||||||||||||||||||||||||||| || |||||||||||||||| | |||||||||||| |||||    
T  10599927 taagaaaatttttaaaaaaaaaaatt--gtcctatttataagaaaaagtcacaacttttgaggtacatttattgtttgaaaaacttttctaaccttcatt 10599830  T
Q  411 taatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatc 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||    
T  10599829 taatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttgtaaaatcattcaaaacattgcaacaactaatc 10599730  T
Q  511 attgtcttggtttt 524  Q
    | ||||||||||||    
T  10599729 aatgtcttggtttt 10599716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 335 - 524
Target Start/End: Original strand, 14568350 - 14568539
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    ||||||||||| |||||||||||||  |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||| || | |||    
T  14568350 tttggtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattag 14568449  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    || ||||||| ||||||||| ||| || ||  | ||||||||| ||||||||||||||| ||| ||| |||| || ||||||||||||||    
T  14568450 tgggtatattgaatacttcaaaaatttataatacggtatatttgtaaaaacattcaaaatattacaataactaatgattgtcttggtttt 14568539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 10600511 - 10600410
Alignment:
Q  93 cgtagcatagaatatgaagagtgttaaatgcctagtgttattatgatggcgctaaaacctattttaaggatcttttaccaatatttggctatttatttat 192  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  10600511 cgtagcatagaagatgaagagtgttaaatgcctagtgttattatgatggcgccaaaacctattttaaggatcttttaccaatatttgactatttatttat 10600412  T
Q  193 ac 194  Q
    ||    
T  10600411 ac 10600410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 41508093 - 41508251
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    ||||||||||  ||||||||||  |||||| ||||||| |  | |||||| || | |||||||| || |||| ||||||||||| ||||||||||| |||    
T  41508093 tttggtcctaaatataagaaaatatcacaatttttaaggtgtagttattgcttaaaagacttttttaccccttatttaatgtttgtctttttaatattag 41508192  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    || || |||||||| ||||||||  |||||||||||||||||| |||||||||||||||    
T  41508193 tgggtgtatttaatgcttcacaattttttatgagggtatatttgtaaaaacattcaaaa 41508251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 417
Target Start/End: Original strand, 42935447 - 42935529
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtt 417  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||  |||||||||||||    
T  42935447 tttggttctatttataagaaaaagtcacaacttttgagatacatttattgtttaaaagatttttctaattctcatttaatgtt 42935529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 438 - 524
Target Start/End: Original strand, 10409789 - 10409877
Alignment:
Q  438 gtatatttaatacttcacaaaattttatgagggtatatttataaaaacattc--aaaacattgcaacaacttatcattgtcttggtttt 524  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||| |||||||||||| || ||||| ||||||||    
T  10409789 gtatatttaatacttcacaaatttttaagagggtatatttataaaaacattcaaaaaaaattgcaacaactaatgattgttttggtttt 10409877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 488
Target Start/End: Complemental strand, 14650247 - 14650104
Alignment:
Q  342 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaac-cctcatttaatgtttatctttttaataatagtgtgta 440  Q
    ||||||||||||||| ||||||| |||||||||  ||||||||  | | |||||||| | |  ||||||| |||||||||| |||||||| |||||  ||    
T  14650247 ctatttataagaaaatgtcacaatttttaagatgtatttattgcataaaagactttttttagtcctcattcaatgtttatcattttaatactagtggata 14650148  T
Q  441 tatttaatacttcacaaaattttatgagggtatatttataaaaacatt 488  Q
    ||||    |||||| ||||||||| |||||||||||| ||||||||||    
T  14650147 tatt----acttcataaaattttacgagggtatatttgtaaaaacatt 14650104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 493
Target Start/End: Complemental strand, 14658873 - 14658771
Alignment:
Q  391 agacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattca 490  Q
    ||||||||  || |||| |||||||||||||||||||||| |||||   ||||||||||||||| |   |||||||||||||||||| |||||||||| |    
T  14658873 agactttttcaatcctcgtttaatgtttatctttttaatactagtggaaatatttaatacttcatatgtttttatgagggtatatttgtaaaaacattta 14658774  T
Q  491 aaa 493  Q
    |||    
T  14658773 aaa 14658771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 405 - 488
Target Start/End: Original strand, 13777702 - 13777786
Alignment:
Q  405 ctcatttaatgtttatctttttaa-taatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacatt 488  Q
    |||||||||| ||| ||||||||| || ||||  ||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  13777702 ctcatttaatatttgtctttttaagtattagtaagtatatttaatacttcacaaatttttatgaacgtatatttataaaaacatt 13777786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 20949066 - 20949223
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||| ||||||||||||||| |||| |||||||||| |  | |||||| || |  || |||| || |||| ||||||||| | |||||| |||| |||    
T  20949066 tttggttctatttataagaaaatgtcataacttttaaggtgtagttattgcttaaatgatttttttatccct-atttaatgtctctcttttgaatattag 20949164  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    | ||| ||||||||  |||||||  |||||||||||||||||| |||||| ||| ||||    
T  20949165 tatgtgtatttaatgtttcacaattttttatgagggtatatttgtaaaaatatttaaaa 20949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 343 - 415
Target Start/End: Complemental strand, 17757558 - 17757486
Alignment:
Q  343 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatg 415  Q
    |||||||||||||||| ||||||||||||| ||||||||||| || | |||| ||| ||||||| ||||||||    
T  17757558 tatttataagaaaaagacacaacttttaaggtacatttattgcttaaaagacatttttaaccctaatttaatg 17757486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 10600666 - 10600627
Alignment:
Q  10 gtgttagtggataacagaaagagaaaaagaacaacaaaaa 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10600666 gtgttagtggataacagaaagagaaaaagaacaacaaaaa 10600627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 476
Target Start/End: Original strand, 46341502 - 46341631
Alignment:
Q  347 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 446  Q
    ||||||||||  |||||||||||||| |  | |||||| || | |||||| |||| | || ||||| ||||| | ||||| ||||||||| || ||||||    
T  46341502 tataagaaaatatcacaacttttaaggtgtagttattgcttaaaagacttctctaccacttatttattgtttttgtttttgataatagtgggtgtattta 46341601  T
Q  447 atacttcacaaaattttatgagggtatatt 476  Q
    || ||||||||  ||||| |||||||||||    
T  46341602 atgcttcacaactttttacgagggtatatt 46341631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 37048576 - 37048663
Alignment:
Q  343 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 430  Q
    ||||||||||||||  |||||||||||||  |  | | ||||||| | ||||||||||| || | |||||||||||||||||||||||    
T  37048576 tatttataagaaaatatcacaacttttaaagtgtagtgattgtttaaaagacttttctaccctttatttaatgtttatctttttaata 37048663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 372
Target Start/End: Original strand, 17205122 - 17205159
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaag 372  Q
    |||||||||||||||||||||| |||||||||||||||    
T  17205122 tttggtcctatttataagaaaatgtcacaacttttaag 17205159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 526
Target Start/End: Original strand, 42935834 - 42935913
Alignment:
Q  448 tacttcacaaaattttatgagggtatatttataaaaacat-tcaaaacattgcaacaacttatcattgtcttggtttttg 526  Q
    ||||||||||  ||||| |||||||||||| |||||||||   |||| |||||||||||| || ||||||||| ||||||    
T  42935834 tacttcacaagtttttaagagggtatatttgtaaaaacatgaaaaaaaattgcaacaactaatgattgtcttgatttttg 42935913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 29808443 - 29808488
Alignment:
Q  339 gtcctatttataagaaaaagtcacaacttttaagatacatttattg 384  Q
    |||||||||||||||||||| ||||||||||| | | |||||||||    
T  29808443 gtcctatttataagaaaaagccacaacttttacggtgcatttattg 29808488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 477
Target Start/End: Original strand, 12506703 - 12506843
Alignment:
Q  337 tggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 436  Q
    ||||||||  ||||||||||  | |||||||||||| |  | ||||||||  | ||||||||||| |||| ||||||||| | | ||||||||   |||     
T  12506703 tggtcctaaatataagaaaatattacaacttttaaggtgtagttattgttcaaaagacttttctatcccttatttaatgtgtttgtttttaatctcagta 12506802  T
Q  437 tgtatatttaatacttcacaaaattttatgagggtatattt 477  Q
     || |||||| |  |||||||  ||||||||||||||||||    
T  12506803 agtgtatttattgtttcacaattttttatgagggtatattt 12506843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 493
Target Start/End: Complemental strand, 45072567 - 45072515
Alignment:
Q  441 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |||||||| |||||||   ||||||||| ||||||||||||||| ||||||||    
T  45072567 tatttaatgcttcacagttttttatgagagtatatttataaaaatattcaaaa 45072515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 335 - 493
Target Start/End: Complemental strand, 17971517 - 17971359
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||| | |||||||||||||||||||||||||||  |||||| |||| |||    
T  17971517 tttggtcctatttataagaaaaagtcacaacttttaaggtatatttattgtttaaaagacttttctaaccctcatttaatgttggtcttttcaatattag 17971418  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  17971417 tgtgtatatttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaa 17971359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 335 - 524
Target Start/End: Original strand, 32715686 - 32715874
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||||||||||||||||||||||||| ||||||| | |||||||||||| | || |||||||| ||||||||||||||| ||||||| |||| |||    
T  32715686 tttggtcctatttataagaaaaagtcacaaattttaaggt-catttattgtttaaaagtcttttctagccctcatttaatgttgatcttttcaatattag 32715784  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    || ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||| |||||||| || ||||||||||||||    
T  32715785 tgggtatatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggtttt 32715874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 336 - 524
Target Start/End: Complemental strand, 27442525 - 27442338
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    |||||||||||||||||||||| |||||||||||||  || ||||| ||||| | |||||||||||||||||||||||||||  |||||  |||| || |    
T  27442525 ttggtcctatttataagaaaaaatcacaacttttaaagtatatttagtgtttaaaagacttttctaaccctcatttaatgttggtctttc-aatattaat 27442427  T
Q  436 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    | ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||||||||| || ||||||||||||||    
T  27442426 gggtatatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattgcaacaactaatgattgtcttggtttt 27442338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 336 - 522
Target Start/End: Complemental strand, 28724117 - 28723932
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    ||||||| || |||||||||||||||||||||| | | | |||||||| ||| | |||||||||||||||||| ||||||||||||||||||||| ||||    
T  28724117 ttggtccaatatataagaaaaagtcacaactttaatg-tgcatttattatttaaaagacttttctaaccctcaattaatgtttatctttttaatattagt 28724019  T
Q  436 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtt 522  Q
    |  |||||||||||||||||||| |||||||||||||||| | ||||| ||||||||| ||| ||||  || || ||||||||||||    
T  28724018 ggttatatttaatacttcacaaatttttatgagggtatatctgtaaaagcattcaaaaaattacaaccgctaatgattgtcttggtt 28723932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 336 - 493
Target Start/End: Original strand, 3574720 - 3574879
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    ||||||||||||||||||||| |||||||||||| | ||  | ||||||||| | | | || |||| ||||||||||||||||||| |||||||| || |    
T  3574720 ttggtcctatttataagaaaatgtcacaacttttcaaatgtagttattgtttaaaaaatttgtctacccctcatttaatgtttatcattttaatattaat 3574819  T
Q  436 gtgtat--atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
     || ||  |||||||| |||||||  |||||| || ||||||||||||||||||||||||    
T  3574820 ttgaatgtatttaatatttcacaattttttataagagtatatttataaaaacattcaaaa 3574879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 350 - 493
Target Start/End: Original strand, 13603078 - 13603224
Alignment:
Q  350 aagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaat- 448  Q
    ||||||||||||||||||| ||| | |||||||||||  | |||||||||||||| ||| | || |||| ||||||||||| |||||  ||||||||||     
T  13603078 aagaaaaagtcacaacttt-aaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaata 13603176  T
Q  449 --acttcacaaaattttatgagggtatatttat-aaaaacattcaaaa 493  Q
      |||||||||| |||||||||||||||||| | ||||||||||||||    
T  13603177 atacttcacaaatttttatgagggtatatttgtaaaaaacattcaaaa 13603224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 484
Target Start/End: Complemental strand, 36437354 - 36437205
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||||||||||||||||| |||||||||||||||  | | |||||| || | |||||||| || |||||||||||||| | ||||||||||| |||    
T  36437354 tttggtcctatttataagaaaatgtcacaacttttaag-gatagttattgcttaaaagacttttttatccctcatttaatgtctgtctttttaatattag 36437256  T
Q  435 tgtg-tatatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    || | | ||||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  36437255 tgggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaa 36437205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 448 - 524
Target Start/End: Complemental strand, 45691643 - 45691567
Alignment:
Q  448 tacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    ||||||||||| |||||||||||||||||| |||||| |||||||| ||| |||||||| || ||||||||||||||    
T  45691643 tacttcacaaatttttatgagggtatatttgtaaaaatattcaaaaaattacaacaactaataattgtcttggtttt 45691567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 493
Target Start/End: Complemental strand, 9851963 - 9851810
Alignment:
Q  339 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg 438  Q
    |||||||||||||||||| ||||||||||||||  |  | |||||| || |  ||| ||| || |||| ||||||||||| |||||| |||| ||||| |    
T  9851963 gtcctatttataagaaaatgtcacaacttttaaagtgtagttattgcttaaatgacctttttatccct-atttaatgtttctcttttaaatattagtggg 9851865  T
Q  439 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    ||||||||||  ||||||  ||||||| | ||||||||| |||||| ||||||||    
T  9851864 tatatttaatgtttcacagtattttataaaggtatatttgtaaaaatattcaaaa 9851810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 484
Target Start/End: Complemental strand, 39150324 - 39150187
Alignment:
Q  346 ttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattt 445  Q
    |||||||||||  |||| ||||||||| |  | |||||| || | ||||||||||| |||| ||||||||||| | ||||||||| || || || |||||    
T  39150324 ttataagaaaatatcactacttttaaggtgtagttattgcttaaaagacttttctaccccttatttaatgtttttgtttttaatattaatgagtgtattt 39150225  T
Q  446 aatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    ||| |||||| || |||||||||||||||||| ||||||    
T  39150224 aatgcttcac-aacttttatgagggtatatttgtaaaaa 39150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 335 - 524
Target Start/End: Complemental strand, 28165280 - 28165091
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||| |||||||||| |||| ||||||||||| ||| || | |||||| || | ||| |||| || |||||||| | | ||||||||||||||| | |    
T  28165280 tttggttctatttataataaaatgtcacaactttaaaggtatagttattgcttaaaagatttttttacccctcattaagtctttatctttttaatattgg 28165181  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    |   | ||||||||  |||||||  |||||| ||||||||||| |||||| |||||||| ||| ||| || | || ||||| ||||||||    
T  28165180 tagatgtatttaatgtttcacaattttttataagggtatatttgtaaaaatattcaaaaaattacaataattgatgattgtattggtttt 28165091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 408 - 493
Target Start/End: Complemental strand, 42454954 - 42454869
Alignment:
Q  408 atttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |||||| |||| ||||||||||| ||||| || |||||||| ||||| ||  ||||||||||||||||||||||||| ||||||||    
T  42454954 atttaacgtttgtctttttaatattagtgagtgtatttaatgcttcataattttttatgagggtatatttataaaaatattcaaaa 42454869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 484
Target Start/End: Original strand, 42745537 - 42745685
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||||||||||||||||| ||||||| |||| |  || | ||||||||| | | |||||| || ||||||||||| | ||  |||||||||| |||    
T  42745537 tttggtcctatttataagaaaatgtcacaatttttgaagtataattattgtttaaaatactttt-tatccctcatttaaggattgcctttttaatattag 42745635  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    ||  | ||||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  42745636 tggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaa 42745685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 493
Target Start/End: Complemental strand, 31181199 - 31181048
Alignment:
Q  343 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatg-tttatctttttaataatagtgtgtat 441  Q
    |||||||||||||| ||||||||||||||  || | ||||||||| | |||||||| ||  | |||||||||| ||| | ||||||||| ||| | || |    
T  31181199 tatttataagaaaatgtcacaacttttaacttatagttattgtttaaaagacttttttacacttcatttaatgttttttttttttaatattagcgagtgt 31181100  T
Q  442 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |||||||  |||||||  || ||| |||||||| || |||||| ||||||||    
T  31181099 atttaatgtttcacaattttctataagggtatacttgtaaaaatattcaaaa 31181048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 425
Target Start/End: Complemental strand, 17988434 - 17988348
Alignment:
Q  339 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttt 425  Q
    |||||| ||||||||||| ||||||||||||||| |  | ||||||||| | |||||||| || |||| |||||||| || ||||||    
T  17988434 gtcctacttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttttaccccttatttaatgcttctctttt 17988348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 338 - 493
Target Start/End: Original strand, 31152431 - 31152584
Alignment:
Q  338 ggtcctatttataagaaaaag-tcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 436  Q
    |||||||||||||| | |||  ||||||||||||||||    |||||| || | ||||||| ||| |||||||||||||||| || |||||||| |||||    
T  31152431 ggtcctatttataaaagaaatatcacaacttttaagatgtcgttattgcttaaaagactttgctacccctcatttaatgtttctc-ttttaatattagtg 31152529  T
Q  437 tgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
        ||||||||  |||||  | ||||||||| |||||||| |||||| ||||||||    
T  31152530 aacgtatttaatgtttcac--atttttatgagcgtatatttgtaaaaatattcaaaa 31152584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 372
Target Start/End: Complemental strand, 31003732 - 31003698
Alignment:
Q  338 ggtcctatttataagaaaaagtcacaacttttaag 372  Q
    ||||||||||||||||||| |||||||||||||||    
T  31003732 ggtcctatttataagaaaatgtcacaacttttaag 31003698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 493
Target Start/End: Original strand, 46443700 - 46443851
Alignment:
Q  340 tcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 439  Q
    ||||||||||||||||| ||||||||||||||| |  | |||||  || | | |||||| || ||||||||| ||  || ||||||||||  |||||  |    
T  46443700 tcctatttataagaaaacgtcacaacttttaaggtgtaattattacttaaaaaacttttttatccctcattt-atagttctctttttaatgttagtgaat 46443798  T
Q  440 atatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
     ||| ||||  ||||| || ||||||| |||||||||| |||||| ||||||||    
T  46443799 gtatataatgtttcac-aatttttatgtgggtatatttgtaaaaatattcaaaa 46443851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 340 - 524
Target Start/End: Complemental strand, 14200516 - 14200333
Alignment:
Q  340 tcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 439  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||| ||||||| |||| ||||| ||    
T  14200516 tcctatttataagaaaa-gtcacaacttttaagatacatttattatttaaaagacttttttaaccctcatttaatgttgatcttttcaatattagtgagt 14200418  T
Q  440 atatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||   | |||| || ||||||||||||||    
T  14200417 atatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattaggataactaatgattgtcttggtttt 14200333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 342 - 524
Target Start/End: Original strand, 7011095 - 7011274
Alignment:
Q  342 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 441  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||    |||||||| |||| ||||| ||||    
T  7011095 ctatttataagaaaaagtcacaatttttaagatacatttattgtttaaaagacttttctaaccctcatttaa----tatcttttcaatattagtgggtat 7011190  T
Q  442 atttaatacttcacaaaattttatgagggtatatttataaaaacattc-aaaacattgcaacaacttatcattgtcttggtttt 524  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||||| |||| ||||||||||||  | ||||||||| ||||    
T  7011191 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactactgattgtcttgatttt 7011274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 347 - 524
Target Start/End: Original strand, 32872346 - 32872523
Alignment:
Q  347 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 446  Q
    |||||||||||||    ||||||||| |||||||||||||| | ||||||||| |||||| ||||||||||| || |||||||| ||||| |||||||||    
T  32872346 tataagaaaaagttgtgacttttaagttacatttattgtttaaaagacttttccaaccctaatttaatgtttgtccttttaatattagtgggtatattta 32872445  T
Q  447 atacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| ||| |||| ||| || ||||||||||||||    
T  32872446 atacttcacaattttttatgagggtatatttgtaaaaacattcaaaaaattacaaccactaatgattgtcttggtttt 32872523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 347 - 493
Target Start/End: Original strand, 31404951 - 31405096
Alignment:
Q  347 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 446  Q
    ||||||||||||||| |  ||||||| |||||||||| ||| | |||||||||||||||||||||||| ||| ||||||||||| |||||  ||||||||    
T  31404951 tataagaaaaagtcatat-ttttaaggtacatttattttttaaaagacttttctaaccctcatttaatatttgtctttttaatattagtgcatatattta 31405049  T
Q  447 atacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |||||||| ||| || ||||||| ||||||| |||||| ||||||||    
T  31405050 atacttcataaatttctatgaggatatatttgtaaaaatattcaaaa 31405096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 38214106 - 38214264
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||| |||||||||||||| |||||||||||||| |  ||||||||||| | |||||||| || ||||||||||||  || ||||||||||| |||    
T  38214106 tttggtccaatttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatatccctcatttaatacttctctttttaatattag 38214205  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    | ||| ||||||||  |||||||  |||||||||| ||||||| |||||| ||||||||    
T  38214206 tatgtgtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaa 38214264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 336 - 493
Target Start/End: Complemental strand, 39063748 - 39063591
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    ||||||| |||||||||||||| |||||||||||||| |  ||||||||||| | |||||||| ||   ||||||||||  || ||||||||||| ||||    
T  39063748 ttggtccaatttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatattgctcatttaatacttctctttttaatattagt 39063649  T
Q  436 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |||| ||||||||  |||||||  |||||||||| ||||||| |||||| ||||||||    
T  39063648 gtgtgtatttaatgtttcacaattttttatgaggttatatttgtaaaaatattcaaaa 39063591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 40442711 - 40442869
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||| ||||||||||||||||| ||||||||||||||| |  | ||||||||| | | |||||| || |||| ||||| ||||||||||||||||| |||    
T  40442711 tttgatcctatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttatctttttaatattag 40442810  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |  ||  ||||||| ||||||||  |||||| ||||||||| |||||||| ||||||||    
T  40442811 taggtgcatttaatgcttcacaactttttataagggtatatctataaaaatattcaaaa 40442869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 40503868 - 40504026
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||| ||||||||||||| ||||||||||||||| |  | ||||||||| | | |||||| || |||| ||||| ||||| ||||||||||| |||    
T  40503868 tttggtcccatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttgtctttttaatattag 40503967  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |  ||  ||||||| ||||||||  |||||||||||||||| | |||||| ||||||||    
T  40503968 taggtgcatttaatgcttcacaactttttatgagggtatatctgtaaaaatattcaaaa 40504026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 339 - 493
Target Start/End: Original strand, 38496470 - 38496624
Alignment:
Q  339 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg 438  Q
    |||||||||||||||||| |||| || ||||||| || | ||||||||| | |||| |||||| |||| |||||| |||| | ||||||||| ||||  |    
T  38496470 gtcctatttataagaaaatgtcagaatttttaaggtatagttattgtttaaaagacctttctaccccttatttaacgtttgtatttttaatattagtagg 38496569  T
Q  439 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    | ||||||||  ||| || | |||||| ||||||||||| |||||| ||||||||    
T  38496570 tgtatttaatgtttcgcacatttttatcagggtatatttgtaaaaatattcaaaa 38496624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 408 - 493
Target Start/End: Complemental strand, 44173721 - 44173636
Alignment:
Q  408 atttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    ||||||||||||||||||||||| |||||  |||| ||||||||| ||||||||||  |||||||||||| |||||||||| ||||    
T  44173721 atttaatgtttatctttttaatattagtgaatatagttaatactttacaaaattttccgagggtatatttctaaaaacatttaaaa 44173636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 523
Target Start/End: Complemental strand, 2287654 - 2287486
Alignment:
Q  353 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatactt 452  Q
    ||||||||||||||||||| ||| |||||||  || | |||||||| ||||| || |||||| ||| | ||||||||| ||||  |||||||||||| ||    
T  2287654 aaaaagtcacaacttttaaaatatatttatttgttaaaagactttt-taaccttcgtttaatatttttttttttaatattagta-gtatatttaatattt 2287557  T
Q  453 cacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggttt 523  Q
     ||||| ||  ||||  ||||| ||||||||||||||||||  ||||||| | | || |||||||||||||    
T  2287556 tacaaatttcgatgaaagtataattataaaaacattcaaaatgttgcaactattaattattgtcttggttt 2287486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 3268791 - 3268949
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||| | |||||||||||  |||||||||||||| |  | ||||||  | | ||||||||||| |||| ||||||||||| | ||||||||| ||     
T  3268791 tttggtccaaattataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaa 3268890  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |  || |||||||  ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  3268891 taggtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaa 3268949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 3269350 - 3269508
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||| | |||||||||||  |||||||||||||| |  | ||||||  | | ||||||||||| |||| ||||||||||| | ||||||||| ||     
T  3269350 tttggtccaaattataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaa 3269449  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |  || |||||||  ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  3269450 taggtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaa 3269508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 3269909 - 3270067
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||| | |||||||||||  |||||||||||||| |  | ||||||  | | ||||||||||| |||| ||||||||||| | ||||||||| ||     
T  3269909 tttggtccaaattataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaa 3270008  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |  || |||||||  ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  3270009 taggtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaa 3270067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 353 - 436
Target Start/End: Original strand, 34262721 - 34262803
Alignment:
Q  353 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 436  Q
    ||||||| |||| ||||||| | |||||||||||| | |||||||||||||||||| ||||||||| ||||||||||| |||||    
T  34262721 aaaaagtaacaa-ttttaaggttcatttattgtttaaaagacttttctaaccctcaattaatgtttgtctttttaatattagtg 34262803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 441 - 524
Target Start/End: Original strand, 34309311 - 34309394
Alignment:
Q  441 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||| |||  ||| || ||||||||| ||||    
T  34309311 tatttaatacttcacaaatttttatgagggtatatttgtaaaagcattcaaaaaattacaatcactaatgattgtcttgatttt 34309394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 353 - 523
Target Start/End: Complemental strand, 2315677 - 2315509
Alignment:
Q  353 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatactt 452  Q
    ||||||||||||||| ||| ||| |||||||  || | |||||||| ||||| || |||||| ||| ||||||||||| || |  |||||||||||| ||    
T  2315677 aaaaagtcacaacttataaaatatatttattagttaaaagactttt-taaccttcgtttaatatttctctttttaatattaata-gtatatttaatattt 2315580  T
Q  453 cacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggttt 523  Q
     ||||| ||  ||||  ||||| ||||||||||||||||||  ||||||| | | || |||||||||||||    
T  2315579 tacaaatttcgatgaaagtataattataaaaacattcaaaatgttgcaactattaattattgtcttggttt 2315509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 477
Target Start/End: Original strand, 16781256 - 16781396
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    |||||| ||||||||||||||||||||||| |||||| || | ||| ||||| | |||||||||||  ||| | ||||||||| ||||| ||||| ||||    
T  16781256 ttggtcatatttataagaaaaagtcacaac-tttaaggtataattaatgtttaaaagacttttctacgccttagttaatgtttgtctttgtaatattagt 16781354  T
Q  436 gtgtatatttaatacttcacaaaattttatgagggtatattt 477  Q
      || ||||||||  ||||| |  ||| ||||||||||||||    
T  16781355 aggtgtatttaatgtttcaccatttttaatgagggtatattt 16781396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 343 - 493
Target Start/End: Complemental strand, 4015934 - 4015785
Alignment:
Q  343 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 442  Q
    ||||||||||||||||||||||| | ||||||| | ||| ||||| | ||||||||||| |||| | ||||||||| ||||| ||||| ||||  ||  |    
T  4015934 tatttataagaaaaagtcacaac-tctaagatatagttaatgtttaaaagacttttctaccccttagttaatgtttgtctttgtaatattagtaggtgca 4015836  T
Q  443 tttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    ||||||  |||| ||  ||| | ||||||||||||||| ||  ||||||||    
T  4015835 tttaatgtttcataatttttaacgagggtatatttatataattattcaaaa 4015785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 336 - 493
Target Start/End: Original strand, 40664228 - 40664386
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatc-tttttaataatag 434  Q
    ||||||| ||| |||||||||  |||||||| ||||  |  ||||||| ||| | |||||||| || ||||||||||||| || || ||||||| | | |    
T  40664228 ttggtccaattgataagaaaatttcacaactcttaaagtgtatttattatttaaaagacttttatatccctcatttaatgcttctcttttttaacattgg 40664327  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    ||||| ||||||||  |||||||  ||||| |||||||||||| ||| || ||||||||    
T  40664328 tgtgtgtatttaatgtttcacaattttttacgagggtatatttgtaagaatattcaaaa 40664386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 524
Target Start/End: Complemental strand, 45724004 - 45723883
Alignment:
Q  403 ccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaac 502  Q
    |||||||||||| ||  |||||| |||| ||||  ||||||||||||||| | ||| |||||||| | ||||||| ||| ||||||||||| |||  | |    
T  45724004 ccctcatttaatattggtcttttcaatattagtaggtatatttaatactttataaatttttatgaagatatatttgtaacaacattcaaaaaattagagc 45723905  T
Q  503 aacttatcattgtcttggtttt 524  Q
    |||| || ||||| ||||||||    
T  45723904 aactaatgattgttttggtttt 45723883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 433
Target Start/End: Complemental strand, 3711992 - 3711895
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataata 433  Q
    |||||| ||||||||||||||| |||||||||||||||  | | ||||||||| | |||||||| || | || ||||||||| ||||||| ||| ||||    
T  3711992 tttggttctatttataagaaaatgtcacaacttttaag-gatagttattgtttaaaagacttttttatcgcttatttaatgtatatctttgtaaaaata 3711895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 493
Target Start/End: Original strand, 21794914 - 21794988
Alignment:
Q  420 tctttttaataatagtgtgtatatttaatacttcacaaaatttt-atgagggtatatttataaaaacattcaaaa 493  Q
    ||||||||||| |||||||| ||||||||  |||||||  |||| |||||||||||||| |||||| ||||||||    
T  21794914 tctttttaatattagtgtgtgtatttaatgtttcacaatttttttatgagggtatatttgtaaaaatattcaaaa 21794988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 372
Target Start/End: Original strand, 21794849 - 21794886
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaag 372  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  21794849 tttggtccaatttataagaaaaattcacaacttttaag 21794886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 35310800 - 35310852
Alignment:
Q  336 ttggtcctatttataagaaaaagtc-acaacttttaagatacatttattgttt 387  Q
    ||||| |||||||||||||||| || || |||||||||||| |||||||||||    
T  35310800 ttggttctatttataagaaaaaatccactacttttaagatatatttattgttt 35310852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 335 - 524
Target Start/End: Complemental strand, 38209674 - 38209485
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||  |||||| |||| |||    
T  38209674 tttggtcatatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaagacttctctaaccctcatttaatgttggtcttttcaatattag 38209575  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    || ||||||| ||||||||||||| |||||  |||||||||||||||||| ||| |||| ||| |||||| | || ||| ||||||||||    
T  38209574 tgggtatattaaatacttcacaaatttttaaaagggtatatttataaaaatatttaaaaaatttcaacaagtaatgattatcttggtttt 38209485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 335 - 524
Target Start/End: Complemental strand, 36408339 - 36408151
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    ||||||| ||| |||||||||||||||||||||| ||| |||||||||||||| ||| |||||| |||||||| |||||||||| ||||||||||| |||    
T  36408339 tttggtcttatatataagaaaaagtcacaacttt-aaggtacatttattgtttaacaaacttttttaaccctcgtttaatgtttgtctttttaatattag 36408241  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    ||  |||| ||||||||| ||||| |||||||||||||||||| ||||||||||||||| |||  ||| ||| || |||||||| |||||    
T  36408240 tggatataattaatacttaacaaatttttatgagggtatatttgtaaaaacattcaaaaaattataactactaataattgtcttagtttt 36408151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 335 - 484
Target Start/End: Original strand, 36054809 - 36054958
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||||||||||||||||| ||||||||||||||| || ||||||||||| | |||||||| || |||| | ||||||||| ||||||||||| |||    
T  36054809 tttggtcctatttataagaaaatgtcacaacttttaaggtatatttattgtttaaaagacttttataccccttaattaatgtttgtctttttaatattag 36054908  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    ||  | ||||||||||||| |||  ||| || ||||||||||||||||||    
T  36054909 tggatgtatttaatacttcccaatttttaataagggtatatttataaaaa 36054958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 395 - 524
Target Start/End: Original strand, 5923871 - 5924004
Alignment:
Q  395 ttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgaggg----tatatttataaaaacattca 490  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||| |||||||||||    ||||||| |||||||||| |    
T  5923871 ttttctaaccctcatttaatgtttgtctttttaatattagtgtgtataattaatactttacaaatttttatgagggcatatatatttttaaaaacattta 5923970  T
Q  491 aaacattgcaacaacttatcattgtcttggtttt 524  Q
    ||| ||| | || ||| || ||| ||||||||||    
T  5923971 aaaaattactaccactaatgattatcttggtttt 5924004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 8251229 - 8251387
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    ||||||||||||||||||||||  |||||||||||||| |  | |||||| || | |||| ||| |  || | |||||||| || ||||||||||| |||    
T  8251229 tttggtcctatttataagaaaatatcacaacttttaaggtgtaattattgcttaaaagacctttttccccattatttaatggttgtctttttaatattag 8251328  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    || || |||||||| ||||||||  |||||||||||||||||| |||||| ||||||||    
T  8251329 tgagtttatttaatgcttcacaattttttatgagggtatatttgtaaaaatattcaaaa 8251387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 336 - 493
Target Start/End: Original strand, 31658847 - 31659003
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    ||||| |||||||||||||||  ||||||||||||||||  | ||||||||| | |||||||| ||||| | ||||||||||| ||||||||||| ||||    
T  31658847 ttggttctatttataagaaaatatcacaacttttaagatgtagttattgtttaaaagacttttttaacctttatttaatgtttgtctttttaatactagt 31658946  T
Q  436 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |  | |||||||| || ||  || |||||||||| ||||||| |||||| ||||||||    
T  31658947 ggatgtatttaatgctgca-taatttttatgaggatatatttgtaaaaatattcaaaa 31659003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 336 - 493
Target Start/End: Original strand, 2207766 - 2207921
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    ||||||||||||||| |||||  |||||| ||||||||| || ||||||  | | ||| ||||||| |||| ||||||||||| | ||||||||| || |    
T  2207766 ttggtcctatttata-gaaaatatcacaatttttaagatgcagttattgcgttaaagaattttctaccccttatttaatgtttgtatttttaatattaat 2207864  T
Q  436 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    | || |||||||| |||||| || |||||||||||||||||| |||||| ||||||||    
T  2207865 gggtgtatttaatgcttcac-aatttttatgagggtatatttgtaaaaatattcaaaa 2207921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 391 - 493
Target Start/End: Original strand, 2152369 - 2152472
Alignment:
Q  391 agacttttctaaccctcatttaatgtttatcttttt-aataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattc 489  Q
    ||||||||||| |||| ||||||||||||||||||| |||| ||| | || |||||||| ||||||||  |||||| |||||||||||||||||| ||||    
T  2152369 agacttttctaccccttatttaatgtttatcttttttaatattagcgagtctatttaatgcttcacaattttttataagggtatatttataaaaatattc 2152468  T
Q  490 aaaa 493  Q
    ||||    
T  2152469 aaaa 2152472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 336 - 493
Target Start/End: Complemental strand, 16890425 - 16890265
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttt---aataat 432  Q
    ||||||||||||||| |||||  |||||||||||||| || | ||| ||||| | ||||||||||| || | ||||| ||||| | |||||   |||| |    
T  16890425 ttggtcctatttatatgaaaatatcacaacttttaaggtatagttagtgtttcaaagacttttctaccctttatttattgtttgtttttttataaatatt 16890326  T
Q  433 agtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |||| || ||||||||  |||||||  |||||||||||||||||| |||||| ||||||||    
T  16890325 agtgagtttatttaatgtttcacaattttttatgagggtatatttgtaaaaatattcaaaa 16890265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 338 - 493
Target Start/End: Original strand, 1445349 - 1445504
Alignment:
Q  338 ggtcctatttataagaaaaagtcacaacttttaagat-acatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 436  Q
    ||||||||||||||||||| ||||||||||||||| |   | |||||| || |  |||||||||| |||| ||||||||||| ||||||  ||| |||||    
T  1445349 ggtcctatttataagaaaatgtcacaacttttaaggtgtaagttattgcttaaatgacttttctatccct-atttaatgtttctcttttagatattagtg 1445447  T
Q  437 tgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
     || ||||||||  |||||||  ||| |||| ||||||||| |||||  ||||||||    
T  1445448 agtgtatttaatgtttcacaatttttaatgaaggtatatttgtaaaagtattcaaaa 1445504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 493
Target Start/End: Complemental strand, 30653701 - 30653628
Alignment:
Q  420 tctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    ||||||||||| |||| ||| ||||||||  |||||||| |||||||||||||||||| |||||  ||||||||    
T  30653701 tctttttaatactagtttgtgtatttaatgtttcacaaatttttatgagggtatatttgtaaaattattcaaaa 30653628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 21504936 - 21504882
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttga 389  Q
    |||||||| ||||||||||||| || ||||||||||||||  |||||||||||||    
T  21504936 tttggtccaatttataagaaaatgttacaacttttaagatgtatttattgtttga 21504882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 30112578 - 30112485
Alignment:
Q  337 tggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 430  Q
    |||||||||||||||||||| ||||||| ||||||| |  | |||||| || | ||| |||| || ||||| |||||||| | |||||||||||    
T  30112578 tggtcctatttataagaaaatgtcacaaattttaaggtgtagttattgcttaaaagatttttttatccctcgtttaatgtatgtctttttaata 30112485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 4641095 - 4641131
Alignment:
Q  394 cttttctaaccctcatttaatgtttatctttttaata 430  Q
    ||||||||||||||||||||||||| |||||||||||    
T  4641095 cttttctaaccctcatttaatgtttgtctttttaata 4641131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 371
Target Start/End: Original strand, 35431579 - 35431614
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaa 371  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35431579 ttggtcctatttataagaaaatgtcacaacttttaa 35431614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 343 - 524
Target Start/End: Complemental strand, 25376991 - 25376810
Alignment:
Q  343 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 442  Q
    |||||| ||||||||||||||  ||||||| || | ||||||||| | ||||||||||||||||||||||||||| ||||||| |||| | ||| |||||    
T  25376991 tatttacaagaaaaagtcacagattttaaggtataattattgtttaaaagacttttctaaccctcatttaatgttgatcttttcaatatttgtgagtata 25376892  T
Q  443 tttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||||||| ||| |||||||| || ||||||||||||||    
T  25376891 tttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggtttt 25376810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 335 - 484
Target Start/End: Original strand, 18838745 - 18838893
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||| |||||||| |||||| |||| |||||||||| || | ||||||||| | ||||||||||| ||||||||||||| |||||||||||||| |||    
T  18838745 tttggttctatttatgagaaaatgtcataacttttaaggtataattattgtttaaaagacttttcta-ccctcatttaatgattatctttttaatattag 18838843  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    || || ||||||||  |||||||  |||||||||||||||||| ||||||    
T  18838844 tgggtgtatttaatgtttcacaattttttatgagggtatatttgtaaaaa 18838893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 336 - 436
Target Start/End: Original strand, 54863918 - 54864018
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||||| ||||||||||||| ||||||| |||| ||||    
T  54863918 ttggtcctatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaaggcttttctaactctcatttaatgttgatcttttcaatattagt 54864017  T
Q  436 g 436  Q
    |    
T  54864018 g 54864018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 441
Target Start/End: Original strand, 21128097 - 21128195
Alignment:
Q  343 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 441  Q
    |||||||||||||| |||| |||||||||  || ||||||| ||| | ||||||||| ||||||||||| |||||||||||||| ||| ||||| ||||    
T  21128097 tatttataagaaaatgtcataacttttaatgtatatttattttttaaaagacttttccaaccctcattttatgtttatcttttttatattagtgagtat 21128195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 392 - 524
Target Start/End: Original strand, 25382400 - 25382531
Alignment:
Q  392 gacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaa 491  Q
    ||||||| || |||| ||||||||||  |||||||| || ||||| |||| |||||||||||||||| ||| || ||||||||||| | |||||||||||    
T  25382400 gacttttgtagcccttatttaatgttagtctttttagtattagtgagtatttttaatacttcacaaattttcataagggtatatttgt-aaaacattcaa 25382498  T
Q  492 aacattgcaacaacttatcattgtcttggtttt 524  Q
    || ||||| | || | || ||||||||| ||||    
T  25382499 aaaattgccataattaattattgtcttgatttt 25382531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 493
Target Start/End: Complemental strand, 31707448 - 31707349
Alignment:
Q  391 agacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattca 490  Q
    ||||||||||| |||| ||||||||||| ||||||||||| ||||| || |||   || ||||| ||| |||||||||||||||||| |||||| |||||    
T  31707448 agacttttctaccccttatttaatgtttgtctttttaatattagtgggtgtat---atgcttcataaatttttatgagggtatatttgtaaaaatattca 31707352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 484
Target Start/End: Original strand, 16572251 - 16572391
Alignment:
Q  341 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 440  Q
    |||||||||||||||| ||||||||||||||| |  | |||||| || ||||| |||| || |||||||||||||  | | ||||||||| ||||   |     
T  16572251 cctatttataagaaaatgtcacaacttttaaggtgtagttattgcttaacagaattttttatccctcatttaatgactgtatttttaatattagt---tg 16572347  T
Q  441 tatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    ||||||||| ||||||| ||| ||| | ||||||||| ||||||    
T  16572348 tatttaatatttcacaatattctataatggtatatttttaaaaa 16572391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 33721768 - 33721675
Alignment:
Q  337 tggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 430  Q
    |||||||||||||||||||| ||||||| ||||||  |  | ||||||||| | ||||||||||| | ||| ||||||||||||| ||||||||    
T  33721768 tggtcctatttataagaaaatgtcacaatttttaatgtgtagttattgtttaaaagacttttctacctctcgtttaatgtttatccttttaata 33721675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 473
Target Start/End: Original strand, 34319546 - 34319682
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    ||||||||||||||||||||| ||||||| ||||||  | |  ||||||||| | |  ||||||| ||||| ||||||||||| ||||||||||| |  |    
T  34319546 ttggtcctatttataagaaaatgtcacaatttttaaagtgcggttattgtttaaaaagcttttct-acccttatttaatgtttttctttttaatatttat 34319644  T
Q  436 gtgtatatttaatacttcacaaaattttatgagggtat 473  Q
    |  ||||||||||  || ||||  ||||||||||||||    
T  34319645 ggatatatttaatgttttacaattttttatgagggtat 34319682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 430
Target Start/End: Complemental strand, 44884507 - 44884411
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaactttt--aagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 430  Q
    ||||||||||| |||||||||| ||||||||||||  ||| |  | ||||||||| | |||||||| || ||||||||||||||||  ||||||||||    
T  44884507 tttggtcctatatataagaaaatgtcacaacttttttaaggtgtagttattgtttaaaagactttt-tatccctcatttaatgtttgcctttttaata 44884411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 492
Target Start/End: Complemental strand, 42312564 - 42312399
Alignment:
Q  335 tttggtcctatttataagaaaa-agtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttt------- 426  Q
    ||||||| ||||||||| |||| | |||||||||||||| || | |||||| || | ||||||||||| || |  ||| |||||| |||||||           
T  42312564 tttggtcttatttataaaaaaataatcacaacttttaaggtatagttattgcttaaaagacttttctatcctttgttttatgtttgtctttttttttttt 42312465  T
Q  427 aataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaa 492  Q
    |||| ||| |  ||||||| || ||||||||  |||||||||||||||||| |||||| |||||||    
T  42312464 aatattagaggatatattttatgcttcacaattttttatgagggtatatttgtaaaaatattcaaa 42312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 417
Target Start/End: Complemental strand, 47231718 - 47231644
Alignment:
Q  343 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtt 417  Q
    |||||||||||||| ||||  |||||||||||| ||||||||||| | ||| |||| || | || ||||||||||    
T  47231718 tatttataagaaaatgtcaatacttttaagatatatttattgtttaaaagatttttttacctcttatttaatgtt 47231644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 335 - 524
Target Start/End: Complemental strand, 30041460 - 30041272
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||| || ||| ||||||||| |||||||| ||| || ||||||||||| | |||||||||||||||| | ||||||||| ||||||||||| |||    
T  30041460 tttggtccaatatattagaaaaagtgacaacttt-aaggtatatttattgtttaaaagacttttctaacccttaattaatgtttgtctttttaatattag 30041362  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    ||  ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| |||| ||| || ||||||||||||||    
T  30041361 tggttatatttaatacttcacaaatctttatgagggtatatttataaaaacattcaaaaaattacaaccactaatgattgtcttggtttt 30041272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 395 - 523
Target Start/End: Original strand, 35104722 - 35104850
Alignment:
Q  395 ttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaac 494  Q
    |||||||||| ||||||||||||  |||||| |||| ||||||||||||||||||| ||| ||||||||| |||||||||||| || ||||||||||||     
T  35104722 ttttctaaccttcatttaatgttggtcttttcaatattagtgtgtatatttaatacctcaaaaaattttaagagggtatatttgtacaaacattcaaaaa 35104821  T
Q  495 attgcaacaacttatcattgtcttggttt 523  Q
    |||||||||||| || |||||||||||||    
T  35104822 attgcaacaactaataattgtcttggttt 35104850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 347 - 430
Target Start/End: Original strand, 49983561 - 49983644
Alignment:
Q  347 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 430  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||    
T  49983561 tataagaaaaagtcacaacttttaagatacatttattgtttaaaagacttttctaaccctcatttaatgtttgtctttttaata 49983644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 41559980 - 41560132
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||| || ||||||||||| ||| || |||||||||||||||||  ||| | |||||||| |||| |||||||||||||| ||||| ||||| |||    
T  41559980 tttggtccaatatataagaaaaaatcataatttttaagatacatttatgatttaaaagacttttttaactctcatttaatgtttgtctttctaatattag 41560079  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    || |      | |||||||||||| |||||||| |||||||||||||||||||||||||    
T  41560080 tgag------ttatacttcacaaatttttatgaaggtatatttataaaaacattcaaaa 41560132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 403 - 493
Target Start/End: Complemental strand, 43105234 - 43105144
Alignment:
Q  403 ccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    ||||||||||||||| ||||||| |||| ||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||||||||    
T  43105234 ccctcatttaatgttgatcttttcaatattagtgggtatatttgatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaa 43105144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 45261357 - 45261512
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||||||||||||||||| ||||||||||||||| |  | |||||| || |  |||||||||| |||| ||||||||||| |||||| |||| |||    
T  45261357 tttggtcctatttataagaaaatgtcacaacttttaagctgtagttattgcttaaatgacttttctatccct-atttaatgtttctcttttaaatattag 45261455  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    || || ||||||||  |||||  |||||| ||||||||||||| ||||||  |||||||    
T  45261456 tgggtgtatttaatgtttcac--aattttttgagggtatatttgtaaaaatgttcaaaa 45261512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 335 - 493
Target Start/End: Complemental strand, 40345085 - 40344929
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||| |||||| |||||||||| ||||||||||||||| |  | | |||| || | |||||||| || |||||||||||| ||| ||||||||||| |||    
T  40345085 tttgttcctatctataagaaaatgtcacaacttttaaggtgtagtcattgcttaagagacttttatacccctcatttaatatttgtctttttaatattag 40344986  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    || |  ||||||||  |||||||  |||||| ||||||||||| |||||| ||||||||    
T  40344985 tgag--tatttaatggttcacaattttttataagggtatatttgtaaaaatattcaaaa 40344929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 343 - 484
Target Start/End: Original strand, 22923629 - 22923773
Alignment:
Q  343 tatttataagaaaaagtcacaacttttaagatac---atttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 439  Q
    ||||||||||||||||| ||||||| ||||||||   |||||||| || |  ||| ||||||| | | |||||||  | |||||||||||| ||||  ||    
T  22923629 tatttataagaaaaagttacaacttgtaagatactatatttattggttaaaggacatttctaatcataatttaattgtgatctttttaatattagtaggt 22923728  T
Q  440 atatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    ||||||||||| ||||||| |||||||| ||||||||| ||||||    
T  22923729 atatttaatacatcacaaatttttatgaaggtatatttgtaaaaa 22923773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 420 - 524
Target Start/End: Original strand, 49983786 - 49983892
Alignment:
Q  420 tctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatattt---ataaaaacattcaaaacattgcaacaacttatcattgtc 516  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||   | |||||||||||||| ||| |||  ||| || ||||||    
T  49983786 tctttttaatattagtgggtatatttaatacttcacaaatttttatgagggtatatttgtaaaaaaaacattcaaaa-attacaatcactaatgattgtc 49983884  T
Q  517 ttggtttt 524  Q
    ||||||||    
T  49983885 ttggtttt 49983892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 375 - 506
Target Start/End: Original strand, 30577821 - 30577952
Alignment:
Q  375 acatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtata 474  Q
    ||||||||| ||| | |||| |||||| |||||||||||||||  |||||| || | ||||   |||||||||||||||||  | |||||||| ||||||    
T  30577821 acatttattatttaaaagacgtttctatccctcatttaatgttggtcttttcaacattagtagatatatttaatacttcactcatttttatgatggtata 30577920  T
Q  475 tttataaaaacattcaaaacattgcaacaact 506  Q
    ||| |||||||||| |||| ||| ||||||||    
T  30577921 tttgtaaaaacatttaaaaaattacaacaact 30577952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 413
Target Start/End: Complemental strand, 43106004 - 43105935
Alignment:
Q  343 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaa 413  Q
    |||||||||||||||||||||||||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  43106004 tatttataagaaaaagtcacaacttttaaggt-tatttattgtttaaaagacttttctaaccctcatttaa 43105935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 337 - 493
Target Start/End: Complemental strand, 17003729 - 17003574
Alignment:
Q  337 tggtcctatttataagaaaaa-gtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    ||||||||||||||| ||||| ||||||||||||||| |  | |||||| || |  ||||||| || |||| ||||||||||| |||||| |||| ||||    
T  17003729 tggtcctatttataaaaaaaatgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttctcttttaaatattagt 17003631  T
Q  436 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    | || | ||||||  |||||||  |||||||||||||||||| |||||| ||||||||    
T  17003630 gggtgtgtttaatgtttcacaat-ttttatgagggtatatttgtaaaaatattcaaaa 17003574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 32211943 - 32211834
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    |||||| ||||||||||||||  |||||||||||||| |  | ||||||||| | ||||||||||| || | ||||||||||| ||||||||||| ||||    
T  32211943 ttggtcttatttataagaaaatttcacaacttttaaggtgtagttattgtttaaaagacttttctacccgttatttaatgtttgtctttttaatattagt 32211844  T
Q  436 gtgtatattt 445  Q
    | || |||||    
T  32211843 gggtgtattt 32211834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 506
Target Start/End: Original strand, 24650120 - 24650285
Alignment:
Q  339 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg 438  Q
    ||||||||||||| ||||  | |||||||||||| || ||||||||||  | | |||||| ||||| || |||||| ||| ||||||||||| ||||| |    
T  24650120 gtcctatttataaaaaaa--ttacaacttttaaggtatatttattgttaaaaaaacttttttaaccttcttttaatttttgtctttttaatattagtgag 24650217  T
Q  439 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaact 506  Q
     |||||||||| |||||||  |||||| |  |||||||| |||||  ||  |||| ||||||||||||    
T  24650218 catatttaatatttcacaattttttataaaagtatatttgtaaaagtataaaaaaaattgcaacaact 24650285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 336 - 493
Target Start/End: Complemental strand, 8825511 - 8825356
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatg--tttatctttttaataata 433  Q
    ||||||||||||||||||||| ||||||| ||||||| |  | |||||| || | ||||||||||| || ||||||||||  ||||   |||||||| ||    
T  8825511 ttggtcctatttataagaaaatgtcacaa-ttttaaggtgtagttattgcttaaaagacttttctatccttcatttaatgacttta---ttttaatatta 8825416  T
Q  434 gtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
     || || |||||||| || |||||  |||||| |||||||||||||||||| ||| ||||    
T  8825415 atgagtgtatttaatgctacacaattttttataagggtatatttataaaaatatttaaaa 8825356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 472
Target Start/End: Original strand, 38854607 - 38854744
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgttt-atctttttaataata 433  Q
    |||||| |||||||||||||||| |||||||||||||  || ||||||| || || |||||||||| |||||| |||||| |||  | |||||||||  |    
T  38854607 tttggttctatttataagaaaaattcacaacttttaaagtatatttatttttaga-agacttttctcaccctcgtttaatttttgttttttttaatatca 38854705  T
Q  434 gtgtgtatatttaatacttcacaaaattttatgagggta 472  Q
     || ||| ||| ||||||||||||| |||||||| ||||    
T  38854706 atgagtaaattcaatacttcacaaatttttatgaaggta 38854744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 457
Target Start/End: Complemental strand, 25295198 - 25295085
Alignment:
Q  344 atttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatat 443  Q
    ||||||||||||| || |||||||||||| |  | ||||||||| | |||||||| || ||||||||||||| || ||||||||||| ||||| || |||    
T  25295198 atttataagaaaatgttacaacttttaaggtgtaattattgtttaaaagacttttttatccctcatttaatgcttctctttttaatattagtgggtttat 25295099  T
Q  444 ttaatacttcacaa 457  Q
    | |||  |||||||    
T  25295098 taaatgtttcacaa 25295085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 484
Target Start/End: Complemental strand, 46918617 - 46918469
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||||||||||||||||| ||||||| |||||||  | | |||||| || | |||||||| || || ||||||||||| | ||||||||||| ||     
T  46918617 tttggtcctatttataagaaaatgtcacaatttttaag-gatagttattgcttaaaagacttttttatccttcatttaatgtctgtctttttaatattaa 46918519  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    ||  | ||||||||  |||| || ||| ||| ||||||||||| ||||||    
T  46918518 tgaatgtatttaatgtttcaaaatattctataagggtatatttgtaaaaa 46918469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 336 - 493
Target Start/End: Original strand, 35455302 - 35455455
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    |||||| |||||||||||||| ||||||||||||||| |  | |||||| || |  |||||||||| |||| |||||||||||||  ||| |||| ||||    
T  35455302 ttggtcttatttataagaaaatgtcacaacttttaaggtgtaattattgcttaaatgacttttctatccct-atttaatgtttat-atttaaatattagt 35455399  T
Q  436 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    | || ||||||||  |||||||  ||||||||  |||||||| || ||| ||||||||    
T  35455400 gagtgtatttaatgtttcacaattttttatga--gtatatttgtagaaatattcaaaa 35455455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 477
Target Start/End: Original strand, 49787770 - 49787879
Alignment:
Q  368 ttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatga 467  Q
    |||||||| ||||||||||| | | |||||| |||||||| |||||||||| || |||||| | || || |||||||||||| || ||||| ||  ||||    
T  49787770 ttaagatatatttattgtttaaaatacttttataaccctcgtttaatgtttgtccttttaaaattaatgagtatatttaatattttacaaatttcaatga 49787869  T
Q  468 gggtatattt 477  Q
    |||| |||||    
T  49787870 gggtgtattt 49787879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 427
Target Start/End: Complemental strand, 43320286 - 43320194
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttta 427  Q
    ||||| |||||||||||||||| ||||||||||||||| |    ||||||||| | ||||||||||| |||  ||| ||||||| ||||||||    
T  43320286 tttggacctatttataagaaaatgtcacaacttttaaggtgtggttattgtttaaaagacttttctagcccctattcaatgtttgtcttttta 43320194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 493
Target Start/End: Complemental strand, 42279287 - 42279233
Alignment:
Q  439 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    ||||||||||| |||| ||| |||||||||||||||||| |||||| ||| ||||    
T  42279287 tatatttaatatttcataaatttttatgagggtatatttgtaaaaatattaaaaa 42279233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 2567789 - 2567821
Alignment:
Q  189 ttatacatcgtaaattgtgttaatttatttttt 221  Q
    |||| ||||||||||||||||||||||||||||    
T  2567789 ttatgcatcgtaaattgtgttaatttatttttt 2567821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 353 - 524
Target Start/End: Original strand, 9425503 - 9425675
Alignment:
Q  353 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatactt 452  Q
    ||||| ||||||||||| || || ||||||||||| | |||||||| ||| ||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  9425503 aaaaaatcacaacttttgaggtatatttattgtttaaaagacttttttaatcctcatttaatgtttatctttttcataatagtgaatatatttaatactt 9425602  T
Q  453 cacaaaattttatgagggtatatttataaaaacattc-aaaacattgcaacaacttatcattgtcttggtttt 524  Q
    |||| ||||||||||| |||||||| ||||||||||| |||| |||||||||||| || ||| ||||||||||    
T  9425603 cacagaattttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactaatgattttcttggtttt 9425675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 350 - 493
Target Start/End: Original strand, 6657887 - 6658029
Alignment:
Q  350 aagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaata 449  Q
    ||||||||||||||||||| ||| |||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  6657887 aagaaaaagtcacaacttt-aaggtacatttattgtttaaatgacttttctaaccctcatttaatgtttgtctttttaatattagtgggtatatttaata 6657985  T
Q  450 cttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    ||||||||| |||||||||||||||||| |||| ||||| ||||    
T  6657986 cttcacaaatttttatgagggtatatttgtaaatacattaaaaa 6658029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 335 - 524
Target Start/End: Original strand, 19780224 - 19780413
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    ||||||||||| |||||||||||||  |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||| || | |||    
T  19780224 tttggtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattag 19780323  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 524  Q
    || ||||||||||||||||||||| || ||    ||||||||| |||||||||| |||| ||| ||| |||| || ||| ||||||||||    
T  19780324 tgggtatatttaatacttcacaaatttataatgcggtatatttgtaaaaacattaaaaaaattacaataactaatgattatcttggtttt 19780413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 493
Target Start/End: Original strand, 180334 - 180491
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    |||||||||||||||||||||  |||||| |||||||||  | |||||| || | |||||||| || |||| ||||||||||| ||||||||||| ||||    
T  180334 ttggtcctatttataagaaaatatcacaatttttaagatgtagttattgcttaaaagacttttataccccttatttaatgtttgtctttttaatattagt 180433  T
Q  436 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
       | |||||||  ||||| ||  |||||| ||||||||||| |||| | ||||||||    
T  180434 cgatgtatttaacgcttcaaaattttttataagggtatatttgtaaacatattcaaaa 180491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 493
Target Start/End: Complemental strand, 34837260 - 34837147
Alignment:
Q  380 tattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttat 479  Q
    |||||||| | |||||||| || |||| |||||||| || ||||||||||| || ||  | |||| ||| ||||||||  |||||||||||||||||| |    
T  34837260 tattgtttaaaagacttttttaccccttatttaatgcttgtctttttaatattaatggatgtattgaatgcttcacaattttttatgagggtatatttgt 34837161  T
Q  480 aaaaacattcaaaa 493  Q
    ||||| ||||||||    
T  34837160 aaaaatattcaaaa 34837147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 484
Target Start/End: Complemental strand, 606772 - 606623
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||||||||||||||||| ||||||||||||||| |  | |||| | || | | ||||||  | |||| ||||||||  | | ||||||||| |||    
T  606772 tttggtcctatttataagaaaatgtcacaacttttaaggtgtacttatagcttaaaatactttttaatcccttatttaatgactgtatttttaatattag 606673  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    ||  | ||||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  606672 tggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaa 606623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 1856752 - 1856839
Alignment:
Q  343 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 430  Q
    ||||||||| ||||  ||||||||||||||   || ||||||||| | ||||||||||| | |||||||||| ||| |||||||||||    
T  1856752 tatttataaaaaaatatcacaacttttaagtatcagttattgtttaaaagacttttctatctctcatttaatatttctctttttaata 1856839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 493
Target Start/End: Complemental strand, 12143771 - 12143716
Alignment:
Q  438 gtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    ||||||||||| ||||||||  |||||||||||| ||||| |||||| ||||||||    
T  12143771 gtatatttaatgcttcacaattttttatgagggtgtatttgtaaaaatattcaaaa 12143716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 30627822 - 30627854
Alignment:
Q  290 tactcactccggtctcatttataagaaaaattt 322  Q
    ||||||||||||||| |||||||||||||||||    
T  30627822 tactcactccggtcttatttataagaaaaattt 30627854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 335 - 521
Target Start/End: Complemental strand, 38987 - 38802
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||||||||||| | | | ||||||| |||| ||| |||| |  | || | |||| |||    
T  38987 tttggtcttatttataagaaaaagtcacaatttttaagatatatttattgtttaaaatatttttctagcccttattgaatg-tcgttttatcaatattag 38889  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggt 521  Q
    ||  ||| ||||||| ||| |||| ||||||||| |||||||| ||||||||||||||| ||||||| |||| || ||||| |||||    
T  38888 tggatatgtttaatagttcccaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaagaactaatgattgttttggt 38802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 350 - 493
Target Start/End: Original strand, 131735 - 131881
Alignment:
Q  350 aagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaat- 448  Q
    ||||||||||||||||||| ||| | |||||||||||  | |||||||||||||| ||| | || |||| ||||||||||| |||||  ||||||||||     
T  131735 aagaaaaagtcacaacttt-aaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaata 131833  T
Q  449 --acttcacaaaattttatgagggtatatttat-aaaaacattcaaaa 493  Q
      |||||||||| |||||||||||||||||| | ||||||||||||||    
T  131834 atacttcacaaatttttatgagggtatatttgtaaaaaacattcaaaa 131881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 335 - 484
Target Start/End: Original strand, 3015 - 3164
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||||||||||||||||| ||||||||||||||| |  | ||||||||| | ||||||||||| |||||||| |||  || ||||||||||| |||    
T  3015 tttggtcctatttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttctatccctcattcaataattctctttttaatattag 3114  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    ||  | ||||||||  ||||||| ||| ||| |||| || ||| ||||||    
T  3115 tggatgtatttaatgtttcacaacattctataagggcatgtttgtaaaaa 3164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 336 - 484
Target Start/End: Complemental strand, 651 - 503
Alignment:
Q  336 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 435  Q
    ||||||||| |||||||||||||||||||| |||||| |  | ||||||||| | |||||||| || ||||||||||||| || || |||||||| ||||    
T  651 ttggtcctaattataagaaaaagtcacaacatttaaggtgtagttattgtttaaaagacttttttatccctcatttaatgattgtcgttttaatattagt 552  T
Q  436 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    |  |  |||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  551 ggatccatttaatgtttcacaacattctataagggtatatttgtaaaaa 503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 51266 - 51424
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||| ||||||||||| ||| ||||||||||||||| |  |||||||| || | ||| |||| || ||||||||||||  || ||||||||||  |||    
T  51266 tttggttctatttataagtaaatgtcacaacttttaaggtgtatttattgcttaaaagatttttttatccctcatttaataattctctttttaattttag 51365  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |  || ||||||||  |||||||  ||||||||||||||| || |||||| ||||||||    
T  51366 ttggtgtatttaatgtttcacaactttttatgagggtataattgtaaaaatattcaaaa 51424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 493
Target Start/End: Complemental strand, 11691152 - 11691056
Alignment:
Q  397 ttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    ||||| |||||||||||||||| ||||||||||  ||||| || ||||||||| |||| || ||||||||||| | ||||| |||||| ||||||||    
T  11691152 ttctatccctcatttaatgtttctctttttaatcttagtgagtgtatttaatatttcataatattttatgaggatgtatttgtaaaaatattcaaaa 11691056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 484
Target Start/End: Original strand, 27193009 - 27193153
Alignment:
Q  340 tcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 439  Q
    ||||||||||||| ||| |||||||||||||||||| | ||||||||| | |||||||| || || ||||||||||  | |||||||||||  | || ||    
T  27193009 tcctatttataaggaaatgtcacaacttttaagatatagttattgtttaaaagacttttttatccttcatttaatgcatctctttttaatataactgagt 27193108  T
Q  440 atatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    || ||||||  |||| ||  |||||||| | ||||||| ||||||    
T  27193109 atttttaatgtttcataattttttatgatgatatatttgtaaaaa 27193153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 342 - 488
Target Start/End: Original strand, 17693562 - 17693705
Alignment:
Q  342 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttt-tctaaccctcatttaatgtttatctttttaataatagtgtgta 440  Q
    ||||||||||||||| ||||||| |||||||||  |||||||   | | ||||||| | ||  ||||||| |||||||||| |||||||| |||||  ||    
T  17693562 ctatttataagaaaatgtcacaatttttaagatgtatttattacataaaagactttctttagtcctcattcaatgtttatcattttaatactagtggata 17693661  T
Q  441 tatttaatacttcacaaaattttatgagggtatatttataaaaacatt 488  Q
    ||||    |||||| ||||||||| |||||||||||| ||||||||||    
T  17693662 tatt----acttcataaaattttacgagggtatatttgtaaaaacatt 17693705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 1963010 - 1962962
Alignment:
Q  339 gtcctatttataagaaaaagtcacaacttttaagatacatttattgttt 387  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  1963010 gtcctatttataagaaaaagtgacaacttttaaaatatatttattgttt 1962962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 3257354 - 3257251
Alignment:
Q  345 tttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatt 444  Q
    ||||||||||||  ||||||||||||||    |  |||||||| | ||||||||||| | || ||||||||||| ||||||||||| |||||  ||||||    
T  3257354 tttataagaaaatatcacaacttttaaggcgtaactattgtttaaaagacttttctatctcttatttaatgtttgtctttttaatattagtggatatatt 3257255  T
Q  445 taat 448  Q
    ||||    
T  3257254 taat 3257251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 477
Target Start/End: Original strand, 6688782 - 6688924
Alignment:
Q  337 tggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttta--ataatag 434  Q
    ||||||||  ||||||||||  |||||||||||||| |  | ||||||||| | ||||||||||| |||| ||||||| | | | ||||||  ||| |||    
T  6688782 tggtcctaaatataagaaaatatcacaacttttaaggtgtagttattgtttaaaagacttttctatcccttatttaatatgtttgtttttaatatattag 6688881  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatattt 477  Q
    |  || |||||||| ||| ||||  ||||||||||||||||||    
T  6688882 taagtgtatttaatgctttacaattttttatgagggtatattt 6688924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 493
Target Start/End: Original strand, 18704992 - 18705150
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||||| | |||||||||||  ||| |||||||||| |  | |||||  || | |||||||| || || | ||||||||||| | ||||||||| ||     
T  18704992 tttggtccaaattataagaaaacatcataacttttaaggtgtagttattacttaaaagacttttttaccctttatttaatgtttttgtttttaatattaa 18705091  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 493  Q
    |  || |||||||| ||||||||  |||||| ||| ||||||| |||||| ||||||||    
T  18705092 taggtgtatttaatgcttcacaactttttataaggatatatttgtaaaaatattcaaaa 18705150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 484
Target Start/End: Complemental strand, 3629360 - 3629215
Alignment:
Q  339 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg 438  Q
    |||| ||||||||||||| ||||||||||||||| |  | |||||  || | |||||||| || |||| ||||||||  | | ||||||||| |||||      
T  3629360 gtccaatttataagaaaatgtcacaacttttaaggtgtagttattacttaaaagacttttgtatccctaatttaatgactgtatttttaatattagtgaa 3629261  T
Q  439 tatatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    | ||||||||  ||||||| ||| ||| ||| ||||||| ||||||    
T  3629260 tgtatttaatgtttcacaacattctataaggttatatttgtaaaaa 3629215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 494
Target Start/End: Original strand, 17686233 - 17686384
Alignment:
Q  343 tatttataagaaaaa-gtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 441  Q
    ||||||||||||||| |||| |||||||||| |  ||||| | | | | ||||||||  || |||| ||||||||| |||||||||||| |||||   |     
T  17686233 tatttataagaaaaaagtcataacttttaaggtgtatttactatataaaagactttttcaatcctcctttaatgtt-atctttttaatactagtggaaac 17686331  T
Q  442 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaac 494  Q
    ||||||||||||| |   |||||||| |||||| || |||||||||| |||||    
T  17686332 atttaatacttcatatgtttttatgaaggtatacttgtaaaaacatttaaaac 17686384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 484
Target Start/End: Original strand, 2225619 - 2225722
Alignment:
Q  381 attgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttata 480  Q
    ||||||| | ||||||||||| |  | ||||||||||| | ||||||||| |||||  | ||||||||  |||||||  |||||||| ||||||||| ||    
T  2225619 attgtttaaaagacttttctaccatttatttaatgtttttgtttttaatattagtggttgtatttaatgtttcacaactttttatgaaggtatatttgta 2225718  T
Q  481 aaaa 484  Q
    ||||    
T  2225719 aaaa 2225722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 457
Target Start/End: Complemental strand, 11983709 - 11983614
Alignment:
Q  362 caacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaa 457  Q
    ||||||||||| |  | ||||||||| | ||| |||| || |||||||||||||||| ||||||||||| |||||  | ||||||||  |||||||    
T  11983709 caacttttaaggtgtaattattgtttaaaagatttttttacccctcatttaatgtttctctttttaatattagtggatgtatttaatgtttcacaa 11983614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 370
Target Start/End: Original strand, 23010685 - 23010720
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaactttta 370  Q
    |||||||||||||||||||||||||||||| |||||    
T  23010685 tttggtcctatttataagaaaaagtcacaaatttta 23010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 14917792 - 14917865
Alignment:
Q  408 atttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 484  Q
    |||||||||||| | ||||||||||   |||| |||||||| ||||||||  ||||| |||||||||||| ||||||    
T  14917792 atttaatgtttagccttttaataat---gtgtgtatttaattcttcacaattttttacgagggtatatttgtaaaaa 14917865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 335 - 491
Target Start/End: Original strand, 154333 - 154489
Alignment:
Q  335 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 434  Q
    |||||| |||||||||||||||  | |||||||||||| |  | ||||||||| | |||| ||| || |  | ||||||||||| ||||||||||| | |    
T  154333 tttggttctatttataagaaaatattacaacttttaaggtgtagttattgtttaaaagacctttttaccttttatttaatgtttgtctttttaatattgg 154432  T
Q  435 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaa 491  Q
    || || |||||||| |||||||   ||||||||||| || ||| |||||| ||||||    
T  154433 tgggtgtatttaatgcttcacagttttttatgagggcatgtttgtaaaaatattcaa 154489  T

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