View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5023-Insertion-12 (Length: 444)

Name: NF5023-Insertion-12

Description: NF5023

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5023-Insertion-12

[»] chr5 (5 HSPs)

Alignment Details

Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 5)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 429; E-Value: 0

Query Start/End: Original strand, 8 - 444

Target Start/End: Complemental strand, 3642528 - 3642092

Alignment:

Q	8	cttttaaatggtttccagattcatgaaaacgtctatgttgctagtcaggtgaaagtacgactaaccaagctgaaaccttttcaaaatgaagcataaaagg	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3642528	cttttaaatggtttccagattcatgaaaacgtctatgttgctagtcaagtgaaagtacgactaaccaagctgaaaccttttcaaaatgaagcataaaagg	3642429	T

Q	108	attgcaaagacaattggtcatggttcagttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaagtattgactg	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3642428	attgcaaagacaattggtcatggttcagttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaagtattgactg	3642329	T

Q	208	ccagagaagtttcaacaaggaaaatcggaaccattgtctagtgtagcatttgttcatctaatttcagctgccttggttagtttattcgcatcaatatcct	307	Q
		\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3642328	ccggagaagtttcaacaaggaaaatcggaaccattgtctagtgtagcatttgttcatctaatttcagctgccttggttagtttattcgcatcaatatcct	3642229	T

Q	308	ggtcatgttaactttggcactgatgatattcttgaatgaattgtcattgacgacttgtataacaattatgcagtccttgtttacaagcctcaagagcata	407	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3642228	ggtcatgttaactttggcactgatgatattcttgaatgaattgtcattgacgacttgtataacaattatgcagtccttgtttacaagcctcaagagcata	3642129	T

Q	408	tacccttataccatacacagactgacatacagatgga	444	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3642128	tacccttataccatacacagactgacatacagatgga	3642092	T

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Target: chr5; HSP #2

Raw Score: 84; E-Value: 9e-40

Query Start/End: Original strand, 93 - 200

Target Start/End: Complemental strand, 9806908 - 9806801

Alignment:

Q	93	atgaagcataaaaggattgcaaagacaattggtcatggttcagttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaatt	192	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	9806908	atgaagcataaaaggattgcaaagacaattggtcatagttcagttgaaatgaagctgttaaccttatgattatctcaagattcatttgttgtctcaaatt	9806809	T

Q	193	ttaaagta	200	Q
		\|\|\|\|\|\|\|
T	9806808	ataaagta	9806801	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3

Raw Score: 41; E-Value: 0.00000000000004

Query Start/End: Original strand, 8 - 92

Target Start/End: Complemental strand, 9807070 - 9806986

Alignment:

Q	8	cttttaaatggtttccagattcatgaaaacgtctatgttgctagtcaggtgaaagtacgactaaccaagctgaaaccttttcaaa	92	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|
T	9807070	cttttaaatggttgccagattcatgaaaacatccctgttgctagtcaagtgaaagtacgattagcagagctggaacctattcaaa	9806986	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4

Raw Score: 38; E-Value: 0.000000000003

Query Start/End: Original strand, 104 - 197

Target Start/End: Original strand, 10606738 - 10606831

Alignment:

Q	104	aaggattgcaaagacaattggtcatggttcagttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaa	197	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|
T	10606738	aaggattgcaatgacaattggtcatagttcaattgaaatgaagctattaagctcatgataatctgaagattcatttggtgactcaaattataaa	10606831	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5

Raw Score: 32; E-Value: 0.00000001

Query Start/End: Original strand, 270 - 333

Target Start/End: Original strand, 10606872 - 10606935

Alignment:

Q	270	ttcagctgccttggttagtttattcgcatcaatatcctggtcatgttaactttggcactgatga	333	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	10606872	ttcagctgccttgtttagtttattccaattaatatccaggtccttttaactctggcactgatga	10606935	T

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