View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5023-Insertion-14 (Length: 347)

Name: NF5023-Insertion-14
Description: NF5023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5023-Insertion-14
NF5023-Insertion-14
[»] chr2 (1 HSPs)
chr2 (8-347)||(6618916-6619255)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 347
Target Start/End: Original strand, 6618916 - 6619255
Alignment:
Q  8 aaaataacaactaaactcaccatgtcagcttcaatggccgcattttgagcatctaatatctcttgaactttctgtttcttcagtttttgcatttctcgca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6618916 aaaataacaactaaactcaccatgtcagcttcaatggccgcattttgagcatctaatatctcttgaactttctgtttcttcagtttttgcatttctcgca 6619015  T
Q  108 atctcgccttctcgcgtttgcttatttcaggaccaccttctccctgaagccacgcaacaaaaagtaattaaaacgtaaccaagctgtttaccatactctc 207  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6619016 atctctccttctcgcgtttgcttatttcaggaccaccttctccctgaagccacgcaacaaaaagtaattaaaacgtaaccaagctgtttaccatactctc 6619115  T
Q  208 tatctctctcactcacttcagtatgtcctaatctactcagctcgaaggattggtctgatgtgctagccacaccacaaaaagtaagtaacttgtaaccacg 307  Q
    ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6619116 tatatctctcactcacttgagtatgtcctaatctactcggctcgaaggattggtctgatgtgctagccacaccacaaaaagtaagtaactcgtaaccacg 6619215  T
Q  308 ctgtttaccatgctccctgtctttctcactcacttcagca 347  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  6619216 ctgtttaccatgctctctatctttctcactcacttcagca 6619255  T

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