View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5023-Insertion-7 (Length: 864)

Name: NF5023-Insertion-7
Description: NF5023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5023-Insertion-7
NF5023-Insertion-7
[»] chr6 (19 HSPs)
chr6 (367-864)||(1118350-1118852)
chr6 (5-368)||(27765318-27765681)
chr6 (474-685)||(10374773-10374988)
chr6 (474-730)||(14448453-14448710)
chr6 (524-623)||(22885213-22885314)
chr6 (780-864)||(2944285-2944369)
chr6 (798-864)||(10374595-10374661)
chr6 (524-623)||(22903171-22903272)
chr6 (512-685)||(3904681-3904855)
chr6 (524-685)||(22917953-22918117)
chr6 (541-641)||(10289067-10289170)
chr6 (773-864)||(26947989-26948081)
chr6 (569-682)||(2401287-2401401)
chr6 (795-864)||(3904501-3904571)
chr6 (497-685)||(34208832-34209020)
chr6 (795-843)||(10290758-10290806)
chr6 (277-368)||(24848312-24848403)
chr6 (518-572)||(32668630-32668684)
chr6 (793-842)||(2401520-2401569)
[»] chr5 (12 HSPs)
chr5 (5-370)||(12870153-12870518)
chr5 (226-369)||(43469538-43469681)
chr5 (497-690)||(24394586-24394781)
chr5 (606-705)||(27598709-27598807)
chr5 (795-864)||(27598887-27598957)
chr5 (549-685)||(22652327-22652464)
chr5 (627-739)||(19006498-19006610)
chr5 (778-833)||(19006407-19006463)
chr5 (794-842)||(22652170-22652218)
chr5 (541-576)||(16842517-16842552)
chr5 (652-739)||(23225018-23225105)
chr5 (126-227)||(21916688-21916790)
[»] chr7 (20 HSPs)
chr7 (226-369)||(10646041-10646184)
chr7 (474-728)||(11918302-11918556)
chr7 (779-864)||(6629183-6629269)
chr7 (586-704)||(6629339-6629457)
chr7 (483-685)||(5299087-5299290)
chr7 (780-840)||(11918192-11918252)
chr7 (773-823)||(15708409-15708459)
chr7 (780-864)||(12484514-12484599)
chr7 (780-864)||(12505945-12506030)
chr7 (524-637)||(12505688-12505803)
chr7 (517-705)||(21383518-21383706)
chr7 (541-574)||(30226084-30226117)
chr7 (525-603)||(12484259-12484339)
chr7 (541-600)||(2076505-2076563)
chr7 (541-600)||(2082924-2082982)
chr7 (517-618)||(9732817-9732920)
chr7 (541-600)||(14984671-14984729)
chr7 (541-600)||(15414282-15414340)
chr7 (390-459)||(6629574-6629643)
chr7 (786-823)||(24814177-24814214)
[»] chr1 (10 HSPs)
chr1 (226-369)||(46566568-46566711)
chr1 (226-368)||(12606569-12606711)
chr1 (246-368)||(49195411-49195533)
chr1 (226-368)||(40908316-40908458)
chr1 (524-705)||(21433929-21434112)
chr1 (773-864)||(4650139-4650230)
chr1 (524-685)||(25123321-25123484)
chr1 (778-862)||(24285157-24285242)
chr1 (649-705)||(24285031-24285087)
chr1 (541-574)||(49086718-49086751)
[»] chr4 (12 HSPs)
chr4 (246-368)||(31525455-31525577)
chr4 (226-369)||(23538151-23538294)
chr4 (543-730)||(39668391-39668577)
chr4 (483-739)||(11865078-11865333)
chr4 (773-843)||(39668295-39668365)
chr4 (510-705)||(24608673-24608866)
chr4 (798-864)||(11864953-11865020)
chr4 (524-576)||(12607263-12607316)
chr4 (778-843)||(12492851-12492918)
chr4 (277-368)||(8652037-8652128)
chr4 (277-368)||(8663844-8663935)
chr4 (541-574)||(13268845-13268878)
[»] chr3 (12 HSPs)
chr3 (246-368)||(33365925-33366047)
chr3 (524-730)||(43902005-43902211)
chr3 (541-682)||(19583927-19584069)
chr3 (778-843)||(43901894-43901959)
chr3 (523-594)||(10082380-10082452)
chr3 (606-704)||(2165922-2166020)
chr3 (541-603)||(8531391-8531453)
chr3 (523-618)||(10189280-10189377)
chr3 (552-728)||(12019636-12019813)
chr3 (652-731)||(5535350-5535429)
chr3 (657-728)||(8532686-8532757)
chr3 (524-584)||(27716326-27716387)
[»] chr8 (4 HSPs)
chr8 (474-739)||(38802214-38802483)
chr8 (777-864)||(38802092-38802179)
chr8 (560-705)||(14423719-14423864)
chr8 (541-574)||(24482317-24482350)
[»] chr2 (22 HSPs)
chr2 (541-704)||(21713347-21713511)
chr2 (508-701)||(31067483-31067679)
chr2 (226-369)||(3081202-3081345)
chr2 (517-731)||(15324990-15325208)
chr2 (541-705)||(17395555-17395719)
chr2 (773-864)||(15325247-15325338)
chr2 (497-739)||(17841105-17841348)
chr2 (475-704)||(18593508-18593737)
chr2 (546-690)||(8944737-8944881)
chr2 (300-369)||(10983161-10983229)
chr2 (773-864)||(17840986-17841077)
chr2 (474-584)||(40588739-40588850)
chr2 (780-843)||(45550281-45550344)
chr2 (773-864)||(31067323-31067415)
chr2 (649-739)||(28645626-28645718)
chr2 (773-864)||(18593805-18593896)
chr2 (778-864)||(25867403-25867490)
chr2 (544-603)||(20186609-20186668)
chr2 (776-837)||(8162753-8162815)
chr2 (784-864)||(8944952-8945033)
chr2 (785-837)||(28645528-28645581)
chr2 (509-573)||(28645793-28645858)
[»] scaffold0238 (2 HSPs)
scaffold0238 (279-369)||(5099-5189)
scaffold0238 (226-286)||(5323-5383)
[»] scaffold0054 (1 HSPs)
scaffold0054 (524-623)||(8730-8831)
[»] scaffold0070 (1 HSPs)
scaffold0070 (773-823)||(6002-6052)
[»] scaffold0157 (1 HSPs)
scaffold0157 (778-843)||(27559-27626)
[»] scaffold0062 (1 HSPs)
scaffold0062 (541-574)||(2205-2238)


Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 367 - 864
Target Start/End: Original strand, 1118350 - 1118852
Alignment:
Q  367 attcatgataaaaacaaagataattgaaattctggcaggtagtaaaatatgtcgaacacgatgtcaaaacatacggaatgtcgagcacaatgtaattaac 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1118350 attcatgataaaaacaaagataattgaaattctggcaggtagtaaaatatgtcgaacatgatgtcaaaacatacggaatgtcgagcacaatgtaattaac 1118449  T
Q  467 aacttagcaacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaaccagttcggtgcaacgtcacctacat 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||    
T  1118450 aacttagcaacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaattagttaggtgcaacgtcacctacat 1118549  T
Q  567 ctgggggcattcaagctatgaaggaaatcgactataaaatattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactac 666  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  1118550 ctgggggcattcaagctatgaaggaaatcgactataaaatattagtttgaagtcctacataaactacctccggtttacagctttcgcacctaatcactac 1118649  T
Q  667 ccgtgatatttctatctaaaacacacctaaatatgagaca------ccccccacctcctctcaatcactcactagtgatttcaacnnnnnnnnnnnnnnn 760  Q
    ||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||                   
T  1118650 ccgtgatatttctatctaaaacacacctaaatatgagacaccccccccccccacctcctctcaatcactcactagtgatttcaac-aaaataaaaatcaa 1118748  T
Q  761 nnnnnngacccgctccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactctaccatgaagg 860  Q
          ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1118749 aacgaagacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtccaactctaccatgaagg 1118848  T
Q  861 tgat 864  Q
    ||||    
T  1118849 tgat 1118852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 5 - 368
Target Start/End: Complemental strand, 27765681 - 27765318
Alignment:
Q  5 acacatgaggtacttcatcgctctctcataaagaagaaggagttagaggaggaaagaatttggcattgaaaacataagagtgaatgggaatagcaaaaaa 104  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27765681 acacgtgaggtacttcatcgctctctcagaaagaagaaggagttagaggaggaaagagtttggcattgaaaacataagagtgaatgggaatagcaaaaaa 27765582  T
Q  105 gttgagagattggggagatagagagacacctcgggcaatacaaattcatttgaaaactgaatggacattgaaggttcattg------gtgggtagttggc 198  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||    
T  27765581 gttgagagattggggagatagagagacacctcgggtaatacaaattcatttgaaaactgaatggacattgaaggttcattggtgttagtgggtagttggc 27765482  T
Q  199 agatagggtcagcacttaatgcaagcttgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggatta 298  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| || |||||||  |||||||||||||||||||||||||||||||| ||||||    
T  27765481 agatagggtcagcacttaatgcaaatttgaaaggtcatcagatcaaagactaagatttatggtgtggttggcagttgagattagcattaattatggatta 27765382  T
Q  299 gggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    |||||||||||||| ||||||||||||||      |||||||||||||||| ||||| ||||||||||||    
T  27765381 gggagggaaaaacaaaagtgattagggca------ccagctcatcaagtctagctttaataataaaggat 27765318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 474 - 685
Target Start/End: Complemental strand, 10374988 - 10374773
Alignment:
Q  474 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggg 572  Q
    |||||||| |||||| |||||| ||||||||||||||||||| |||||| |||||| |||| | ||| ||||||  |||||||||||||||||| |||||    
T  10374988 caacacaaataacaattaacaacttaaagtaaattgcagaaagtaaatgacacaaggtattagttaacccagtttagtgcaacgtcacctacatttgggg 10374889  T
Q  573 gc-attcaagctatgaaggaaatcgactataa-aatattagtttgaagtcctacgtaaactacctccggtttac-aggtttcgcacctaatcactacccg 669  Q
    || |||||||| | |||||||| | ||||||| | |||||||||||||||||| |||||  || || | |||||  |  |||||| | |||||||||||     
T  10374888 gcaattcaagccaggaaggaaaaccactataatagtattagtttgaagtcctatgtaaataacatctgatttacttgccttcgcatcaaatcactacccc 10374789  T
Q  670 tgatatttctatctaa 685  Q
    ||||||||||||||||    
T  10374788 tgatatttctatctaa 10374773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 474 - 730
Target Start/End: Complemental strand, 14448710 - 14448453
Alignment:
Q  474 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggg 572  Q
    |||||||| || |||||||||| ||||||  || | | ||||  ||| || |||||||||||| ||||| |||||||||||||||||| || ||||  ||    
T  14448710 caacacaaatagcaaataacaaattaaagataaataccgaaagaaaaaggtacaagttatttgttaacctagttcggtgcaacgtcacttagatcttagg 14448611  T
Q  573 gcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtg 671  Q
    ||  ||||||   |||||||||| ||||| | | ||||||||||||| ||| | ||||| ||||||||| |||    ||||||||||||| |||||| ||    
T  14448610 gctatcaagcctagaaggaaatccactattatagtattagtttgaag-cctgcataaacaacctccggtctactaaattcgcacctaatctctacccatg 14448512  T
Q  672 atatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactc 730  Q
    |||||||||||||  |||| || | |||| |||| || | ||||||| |||||||||||    
T  14448511 atatttctatctatgacactccaagatataagacccctctcacctcccctcaatcactc 14448453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 524 - 623
Target Start/End: Complemental strand, 22885314 - 22885213
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||| | ||||||||||||||||    
T  22885314 cacaagatatttgttaacccagtacggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatctactataatagtattagtttgaagtcc 22885215  T
Q  622 ta 623  Q
    ||    
T  22885214 ta 22885213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 780 - 864
Target Start/End: Original strand, 2944285 - 2944369
Alignment:
Q  780 aaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    |||||||||||||  || |||||||||||| || |||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  2944285 aaacagaatccactcttacttaaaagcttaagattgattcacaattacaactcaactatcagtccaactctagcatcaaggtgat 2944369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 798 - 864
Target Start/End: Complemental strand, 10374661 - 10374595
Alignment:
Q  798 cttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  10374661 cttaaaagcttatgagtgattcacaattacaactcaactatcagtccaactctagcatcaaggtgat 10374595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 524 - 623
Target Start/End: Complemental strand, 22903272 - 22903171
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||||||| ||| ||||| | |||| ||||| ||||||| | ||||||||||||||||    
T  22903272 cacaagatatttgttaacccagtgcggtgcaacgtcacctacatctggggacatccaagccaggaagaaaatctactataatagtattagtttgaagtcc 22903173  T
Q  622 ta 623  Q
    ||    
T  22903172 ta 22903171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 685
Target Start/End: Complemental strand, 3904855 - 3904681
Alignment:
Q  512 gaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tatt 609  Q
    |||| |||| |||||||| |||||| ||||| ||||||||| |||||| ||||| | |||||  |  ||||| | |||||||||| ||||||| | ||||    
T  3904855 gaaaataaaaggcacaagatatttgttaacctagttcggtgaaacgtcccctacgtttggggctac-caagccaggaaggaaatcaactataatagtatt 3904757  T
Q  610 agtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaa 685  Q
    | ||  |||||||| || ||| ||||||||||||  |  ||| ||| |||||||||||||||||||||||||||||    
T  3904756 aattgaaagtcctatgtgaacaacctccggtttatcgccttctcacttaatcactacccgtgatatttctatctaa 3904681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 524 - 685
Target Start/End: Complemental strand, 22918117 - 22917953
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||||| |||  |||||||||||||||||||||| || ||| ||||| | |||||||||| |  |||| | ||||||||||||||||    
T  22918117 cacaagatatttgttaacccagtatggtgcaacgtcacctacatctgaggacatccaagccaggaaggaaatctataataatagtattagtttgaagtcc 22918018  T
Q  622 tacgtaaactacctccggtttacag-gtttcgcacctaatcactacccgtgatatttctatctaa 685  Q
    || || ||| || |  |||| || |  | || |||||||||||| ||||||||||||||||||||    
T  22918017 tatgtgaacaacatttggttcactgcctatctcacctaatcacttcccgtgatatttctatctaa 22917953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 541 - 641
Target Start/End: Original strand, 10289067 - 10289170
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa---aatattagtttgaagtcctacgtaaactacctcc 637  Q
    |||||||||||||| ||||| || ||||||||||||  | | || |||||||||| |||||||    ||||||||||||||||||| || ||| ||||||    
T  10289067 ccagttcggtgcaatgtcacttatatctgggggcatctacgttaggaaggaaatccactataatagtatattagtttgaagtcctatgtgaacaacctcc 10289166  T
Q  638 ggtt 641  Q
    ||||    
T  10289167 ggtt 10289170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 773 - 864
Target Start/End: Complemental strand, 26948081 - 26947989
Alignment:
Q  773 ctccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    |||| ||||||| |||||||  |||||| |||||||||||||||||||||| ||||||| ||||||  |||| ||||| | ||| ||||||||    
T  26948081 ctccgagaaacataatccactcttgctttaaagcttacgagtgattcacaacttacaacacaactagaagtctaactcaagcattaaggtgat 26947989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 682
Target Start/End: Original strand, 2401287 - 2401401
Alignment:
Q  569 gggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacc 667  Q
    |||||||| ||||| | |||||||||  ||||||| | |||||||||||| ||||| || ||  ||||| |||| ||    ||| |||||||||||||||    
T  2401287 gggggcatccaagccaggaaggaaattcactataatagtattagtttgaaatcctatgtgaaaaacctctggttcactaccttctcacctaatcactacc 2401386  T
Q  668 cgtgatatttctatc 682  Q
    |||||||||||||||    
T  2401387 cgtgatatttctatc 2401401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 795 - 864
Target Start/End: Complemental strand, 3904571 - 3904501
Alignment:
Q  795 ttgcttaaaagcttacgagtgattcac-aattacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    ||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||| | ||| ||||||||    
T  3904571 ttgcttaaaagcttatgagtgattcacaaaatacaactcaactataagtccaactcaagcatcaaggtgat 3904501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 685
Target Start/End: Original strand, 34208832 - 34209020
Alignment:
Q  497 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 595  Q
    |||||||||| ||||| ||  ||||  |||||  |||||||||||| |||||||||||| || |||||||||||  ||||| | ||| |||||||||||     
T  34208832 ttaaagtaaaatgcaggaaggaaataacacaaagtatttgctaacccagttcggtgcaatgttacctacatctgatggcatccgagccatgaaggaaata 34208931  T
Q  596 gactataaaatattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaa 685  Q
     |||| | | ||||| ||  |||||||| || ||| |||||||||| || |  ||| ||| | |||||||| | || |||||||||||||    
T  34208932 cacta-atagtattaattcaaagtcctaggtgaacaacctccggttcactgtcttctcacttcatcactactcatggtatttctatctaa 34209020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 795 - 843
Target Start/End: Original strand, 10290758 - 10290806
Alignment:
Q  795 ttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtc 843  Q
    ||||||||||||||  ||||||||||||| |||||||||||| ||||||    
T  10290758 ttgcttaaaagcttcagagtgattcacaaatacaactcaactttcagtc 10290806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 24848312 - 24848403
Alignment:
Q  277 gattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    ||||| |||||||||||| |||||||| |||||  ||||  |||||||||||   ||| ||||   ||||||| ||||||||||||||||||    
T  24848312 gattaacattaattacggtttagggagcgaaaatgagaatagattagggcaaacatgctagcttggcaagtctagcttttataataaaggat 24848403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 518 - 572
Target Start/End: Original strand, 32668630 - 32668684
Alignment:
Q  518 aaatggcacaagttatttgctaaccagttcggtgcaacgtcacctacatctgggg 572  Q
    ||||| |||||||| ||||  | |||||||||||||| |||||||||||||||||    
T  32668630 aaatgacacaagttgtttgtaacccagttcggtgcaaagtcacctacatctgggg 32668684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 793 - 842
Target Start/End: Original strand, 2401520 - 2401569
Alignment:
Q  793 ctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagt 842  Q
    ||||||||||||||||   ||||||||| || ||||||||||||||||||    
T  2401520 ctttgcttaaaagctttaaagtgattcataaatacaactcaactatcagt 2401569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 314; Significance: 1e-176; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 5 - 370
Target Start/End: Complemental strand, 12870518 - 12870153
Alignment:
Q  5 acacatgaggtacttcatcgctctctcataaagaagaaggagttagaggaggaaagaatttggcattgaaaacataagagtgaatgggaatagcaaaaaa 104  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12870518 acacatgaggtacttcatcgctctctcagaaaaaagaaggagttagaggaggaaagagtttggcattgaaaacataagagtgaatgggaatagcaaaaaa 12870419  T
Q  105 gttgagagattggggagatagagagacacctcgggcaatacaaattcatttgaaaactgaatggacattgaaggttcattggtgggtagttggcagatag 204  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12870418 gttgagagattggggagatagagagacacctcgggtaatacgaattcatttgaaaactgaatggacattgaaggttcattagtgggtagttggcagatag 12870319  T
Q  205 ggtcagcacttaatgcaagcttgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagg 304  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||  |||||  ||||||||||||||||||||||||||    
T  12870318 ggtcagcacttaatgcaagcttgaaaagtcatcagatcaaaggctgagatttagggtgtggttggttgttgaagttagcattaattacggattagggagg 12870219  T
Q  305 gaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggattc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12870218 gaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttatagtaaaggattc 12870153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 43469538 - 43469681
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||| || |||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||| |||||||||||  ||||||||||||||    
T  43469538 tgaaaggtcttccgatcaaaggctgagatttagggtgtggttggcagatgaaattaacattaattacggatttgggagggaaaataagaagtgattaggg 43469637  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43469638 caacactgccagctcatcaagtctggcttttataataaaggatt 43469681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 497 - 690
Target Start/End: Original strand, 24394586 - 24394781
Alignment:
Q  497 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 595  Q
    ||||| ||||||||||||| ||||||  || ||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  24394586 ttaaattaaattgcagaaagtaaatgatacgagttatttgttaacccatttcggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatc 24394685  T
Q  596 gactataa-aatattagtttgaagtcctacgtaaactacctccggtttac-aggtttcgcacctaatcactacccgtgatatttctatctaaaacac 690  Q
     ||||||| | |||| |||||||||||| ||| ||| |||||||||||||  |  |||||||||||||| ||||  |||||||||||||||| ||||    
T  24394686 cactataatagtatttgtttgaagtcctgcgt-aacaacctccggtttacttgccttcgcacctaatcattacctatgatatttctatctaagacac 24394781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 606 - 705
Target Start/End: Original strand, 27598709 - 27598807
Alignment:
Q  606 tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagac 705  Q
    ||||||||||||  ||||| ||||| |||||||||||||  ||||||||||||||||||||  |||||||||||||||||||||| |||| || ||||||    
T  27598709 tattagtttgaaa-cctacataaacaacctccggtttactagtttcgcacctaatcactacttgtgatatttctatctaaaacactcctagatgtgagac 27598807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 795 - 864
Target Start/End: Original strand, 27598887 - 27598957
Alignment:
Q  795 ttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||| |||| ||||||| ||| ||||||||    
T  27598887 ttgcataaaagcttatgagtgattcacaacttacaactcaactattagtccaactctagcatcaaggtgat 27598957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 549 - 685
Target Start/End: Complemental strand, 22652464 - 22652327
Alignment:
Q  549 gtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaat-attagtttgaagtcctacgtaaactacctccggtttacagg 647  Q
    |||||||||| ||||||| |||||||||  |||| | |||||||||  ||||||| || ||||||||||||||||| || ||| |||||| ||| ||       
T  22652464 gtgcaacgtcgcctacatatgggggcatcgaagccaggaaggaaattcactataatattattagtttgaagtcctatgtgaacaacctccagttcacttc 22652365  T
Q  648 tttcgcacctaatcactacccgtgatatttctatctaa 685  Q
     ||| |||| ||| ||||||  ||||||||||||||||    
T  22652364 cttctcaccaaataactacctttgatatttctatctaa 22652327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 739
Target Start/End: Complemental strand, 19006610 - 19006498
Alignment:
Q  627 aaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatc 726  Q
    |||| ||||| |||||||  | ||| |||||||||||||||| ||  |||||||||||| |||| |||| || |||||| || | ||| ||| |||||||    
T  19006610 aaacaacctctggtttactagcttcacacctaatcactacccatgcaatttctatctaagacactcctagatctgagacccctctcacttcccctcaatc 19006511  T
Q  727 actcactagtgat 739  Q
    |||||| ||||||    
T  19006510 actcaccagtgat 19006498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 778 - 833
Target Start/End: Complemental strand, 19006463 - 19006407
Alignment:
Q  778 agaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactca 833  Q
    ||||||||||| |||  ||||||||||||||| ||||||||||||| ||||||||||    
T  19006463 agaaacagaattcactcttgcttaaaagcttatgagtgattcacaacttacaactca 19006407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 794 - 842
Target Start/End: Complemental strand, 22652218 - 22652170
Alignment:
Q  794 tttgcttaaaagcttacgagtgattcacaattacaactcaactatcagt 842  Q
    |||||||||||||||  ||| ||||||||| ||||||||||||||||||    
T  22652218 tttgcttaaaagcttcagagcgattcacaagtacaactcaactatcagt 22652170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 576
Target Start/End: Original strand, 16842517 - 16842552
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcat 576  Q
    |||||||||||||||||||||||||||||| |||||    
T  16842517 ccagttcggtgcaacgtcacctacatctggaggcat 16842552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 739
Target Start/End: Original strand, 23225018 - 23225105
Alignment:
Q  652 gcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactcactagtgat 739  Q
    ||||||||||||||||||||  |||||||||||| || | |||| |||||| ||  | | ||| ||| ||||||||||||| ||||||    
T  23225018 gcacctaatcactacccgtgtaatttctatctaagactctcctagatatgaaacctctctcacttcccctcaatcactcaccagtgat 23225105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 21916790 - 21916688
Alignment:
Q  126 agagacacctcgggcaatacaaattcatttgaaaactgaatggacattgaaggttcattggtgggtagttggcagat-agggtcagcacttaatgcaagc 224  Q
    |||||||||| ||||||||||||| || ||||  | || | ||| ||  |||||||||| ||||||||||||||| | ||  | ||||||||||||||||    
T  21916790 agagacaccttgggcaatacaaatgcaattgatgaatggagggatatgaaaggttcattagtgggtagttggcagttaagtttgagcacttaatgcaagc 21916691  T
Q  225 ttg 227  Q
    |||    
T  21916690 ttg 21916688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 10646041 - 10646184
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  10646041 tgaatggtcatcagatcaaaggctgagatttagggtgtggttggcagatgagattagcattaattacggatttgggagggaaaataagaagtgattaggg 10646140  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  10646141 caacactgccagctcatcaagtctggcttttagaataaaggatt 10646184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 474 - 728
Target Start/End: Complemental strand, 11918556 - 11918302
Alignment:
Q  474 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaac-cagttcggtgcaacgtcacctacatctgggg 572  Q
    |||||||| |||| |  ||||| ||||||||||||| || || |||||  |||||  |||||| |||| ||||| |||||||| ||||||||||||||||    
T  11918556 caacacaaataaccataaacaacttaaagtaaattgtaggaagtaaataacacaaagtatttgttaactcagttgggtgcaacatcacctacatctgggg 11918457  T
Q  573 gcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtg 671  Q
    |||  ||||| |||||||||||  | | ||| | | |||||||||||||||| |||||| ||||| ||||||| |  || ||||||||||||||||||||    
T  11918456 gcagccaagccatgaaggaaat--attgtaatagttttagtttgaagtcctatgtaaacaacctctggtttactgccttggcacctaatcactacccgtg 11918359  T
Q  672 atatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcac 728  Q
    |||||||||||||| ||||||||| |  |||||| || | ||  |||||||||||||    
T  11918358 atatttctatctaagacacacctagacgtgagacccctctcaattcctctcaatcac 11918302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 779 - 864
Target Start/End: Complemental strand, 6629269 - 6629183
Alignment:
Q  779 gaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| | ||| ||||||||    
T  6629269 gaaacagaatccactcttgcttaaaagcttacgagtgattcacaacttacaactcaactataagtccaactcaagcatcaaggtgat 6629183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 586 - 704
Target Start/End: Complemental strand, 6629457 - 6629339
Alignment:
Q  586 gaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatcta 684  Q
    |||||||||| ||||||| | ||||||||||||| ||| | ||||| || | | ||||||  |||||||||||||||||||||| |||||||||||||||    
T  6629457 gaaggaaatccactataatagtattagtttgaag-cctgcataaacaactttcagtttactagtttcgcacctaatcactacccatgatatttctatcta 6629359  T
Q  685 aaacacacctaaatatgaga 704  Q
    | |||| |||| ||||||||    
T  6629358 agacactcctagatatgaga 6629339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 483 - 685
Target Start/End: Original strand, 5299087 - 5299290
Alignment:
Q  483 taacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaag 581  Q
    ||||||||||||| ||||||  ||  || |||| |||||||||||||||||| | ||||| |||| ||| |||| || |||| |||| |||||   ||||    
T  5299087 taacaaataacaacttaaagataaaagctgaaagtaaatggcacaagttattcgttaacccagtttggtacaacatcgcctagatctaggggctaccaag 5299186  T
Q  582 ctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttcta 680  Q
    | | |||||||||| ||||||| | ||||| ||||||| | | | ||||| |||||  | ||||  | |||||||||||||||||||||||| |||||||    
T  5299187 ccaggaaggaaatccactataatagtattattttgaag-catgcataaacaacctcaagattactagcttcgcacctaatcactacccgtgaaatttcta 5299285  T
Q  681 tctaa 685  Q
    |||||    
T  5299286 tctaa 5299290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 780 - 840
Target Start/End: Complemental strand, 11918252 - 11918192
Alignment:
Q  780 aaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatca 840  Q
    |||||||||| ||  |||||||||| ||||||||||||||||||||||| |||||||||||    
T  11918252 aaacagaatctactcttgcttaaaaacttacgagtgattcacaattacagctcaactatca 11918192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 773 - 823
Target Start/End: Original strand, 15708409 - 15708459
Alignment:
Q  773 ctccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa 823  Q
    |||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  15708409 ctccaagaaacaaaatccactcttgcttaaaagcttacgagtgattcacaa 15708459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 780 - 864
Target Start/End: Original strand, 12484514 - 12484599
Alignment:
Q  780 aaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    ||||| |||||||  |||||||||||||| ||||||||||| || |||||||||||||| ||||  ||||||| ||| ||||||||    
T  12484514 aaacataatccactcttgcttaaaagcttgcgagtgattcagaacttacaactcaactaacagtgcaactctagcatcaaggtgat 12484599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 780 - 864
Target Start/End: Original strand, 12505945 - 12506030
Alignment:
Q  780 aaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    ||||| |||||||  |||||||||||||| ||||||||||| || |||||||||||||| ||||  ||||||| ||| ||||||||    
T  12505945 aaacataatccactcttgcttaaaagcttgcgagtgattcagaacttacaactcaactaacagtgcaactctagcatcaaggtgat 12506030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 637
Target Start/End: Original strand, 12505688 - 12505803
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatct-gggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtc 620  Q
    |||||| |||||| ||||| ||||||||| |||||||||||||||| ||||||   ||||||| |||||||||| ||||||| | ||| ||||||||| |    
T  12505688 cacaagatatttgttaacccagttcggtgtaacgtcacctacatctggggggctaccaagctaggaaggaaatctactataatagtatcagtttgaag-c 12505786  T
Q  621 ctacgtaaactacctcc 637  Q
    || ||||||||| ||||    
T  12505787 cttcgtaaactatctcc 12505803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 705
Target Start/End: Complemental strand, 21383706 - 21383518
Alignment:
Q  517 taaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagttt 614  Q
    |||| |||||| |||||||| ||||| |||| ||||||||||||| ||| ||| ||   |  ||||| | |||||||||  ||||||| | |||||||||    
T  21383706 taaaaggcacatgttatttgataacccagtttggtgcaacgtcacatacgtcttggactac-caagccaggaaggaaatttactataatagtattagttt 21383608  T
Q  615 gaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagac 705  Q
    |||| | | | ||||| |||||| || |||  | ||| |||||||||||||||||||  |||||||||||| |||| |||| |||||||||    
T  21383607 gaag-catgcataaacaacctccagtctactagcttcacacctaatcactacccgtgtaatttctatctaagacactcctagatatgagac 21383518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 574
Target Start/End: Original strand, 30226084 - 30226117
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    ||||||||||||||||||||||||||||||||||    
T  30226084 ccagttcggtgcaacgtcacctacatctgggggc 30226117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 603
Target Start/End: Original strand, 12484259 - 12484339
Alignment:
Q  525 acaagttatttgctaacca-gttcggtgcaacgtcacctacatct-gggggcattcaagctatgaaggaaatcgactataa 603  Q
    ||||| |||||| |||||| |||||||| |||||||||||||||| ||||||   ||||||| |||||||||| |||||||    
T  12484259 acaagatatttgttaaccaagttcggtgtaacgtcacctacatctggggggctaccaagctaggaaggaaatctactataa 12484339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 2076505 - 2076563
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgacta 600  Q
    |||||||||||||||||||||||| |||||||||   ||||| |||||||||||| ||||    
T  2076505 ccagttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2076563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 2082924 - 2082982
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgacta 600  Q
    |||||||||||||||||||||||| |||||||||   ||||| |||||||||||| ||||    
T  2082924 ccagttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2082982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 618
Target Start/End: Complemental strand, 9732920 - 9732817
Alignment:
Q  517 taaatggcacaagttatttgctaac-cagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactata-aaatattagttt 614  Q
    |||| |||||||||| |||| |||| |||||| ||||||||||||||| ||||||||||   ||||| ||||| |||||  ||||||  ||||||| |||    
T  9732920 taaaaggcacaagttgtttgttaactcagttcagtgcaacgtcacctagatctgggggctaccaagccatgaacgaaattcactatagcaatattaattt 9732821  T
Q  615 gaag 618  Q
    ||||    
T  9732820 gaag 9732817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 14984671 - 14984729
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgacta 600  Q
    |||||||||||||||||||||||| |||||||||  |||||| | |||||||||| ||||    
T  14984671 ccagttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 14984729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 15414282 - 15414340
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgacta 600  Q
    |||||||||||||||||||||||| |||||||||  |||||| | |||||||||| ||||    
T  15414282 ccagttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 15414340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 459
Target Start/End: Complemental strand, 6629643 - 6629574
Alignment:
Q  390 ttgaaattctggcaggtagtaaaatatgtcgaacacgatgtcaaaacatacggaatgtcgagcacaatgt 459  Q
    |||||||||||||| ||||||||| | || || ||||||||||| |||  ||||||||| || |||||||    
T  6629643 ttgaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcggaatgtcaagtacaatgt 6629574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 823
Target Start/End: Original strand, 24814177 - 24814214
Alignment:
Q  786 aatccacctttgcttaaaagcttacgagtgattcacaa 823  Q
    |||||||  |||||||||||||||||||||||||||||    
T  24814177 aatccactcttgcttaaaagcttacgagtgattcacaa 24814214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 9e-54; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 226 - 369
Target Start/End: Complemental strand, 46566711 - 46566568
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||  ||| |||||||||||  ||||||||||||||    
T  46566711 tgaaaggtcatcagatcaaaggctgagatttaggatgtggttggcagatgagattagcattaattacaaatttgggagggaaaataagaagtgattaggg 46566612  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  46566611 caacactgccagctcatcaaatctggcttttataataaaggatt 46566568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 226 - 368
Target Start/End: Original strand, 12606569 - 12606711
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||  || |||||||||||    
T  12606569 tgaaaggtcatcagatcaaaggctgagatttagggtgtggttggcagatgggattagcattaattatggattagggagggaaaataaggagtgattaggg 12606668  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    ||||||||||||| |||||||||||||||||||| ||||||||    
T  12606669 caacactgccagcacatcaagtctggcttttatagtaaaggat 12606711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 246 - 368
Target Start/End: Original strand, 49195411 - 49195533
Alignment:
Q  246 ggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaa 345  Q
    ||||| ||||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49195411 ggctgtgatttagtgtgtggttggcagatgagattaacattaattacagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaa 49195510  T
Q  346 gtctggcttttataataaaggat 368  Q
    |||||||||||||||||||||||    
T  49195511 gtctggcttttataataaaggat 49195533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 226 - 368
Target Start/End: Complemental strand, 40908458 - 40908316
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||||| | | ||| ||||||||||||  ||||||||||||| |||||||| |||||| | |   ||||||||||||||  ||   |||||||||    
T  40908458 tgaaaggtcatgaaagcaacggctgagatttaacgtgtggttggcagatgagattaacattaaattcatgttagggagggaaaatgagggatgattaggg 40908359  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  40908358 caacactgccagctcatcaagtctggcttttatagtaaaggat 40908316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 524 - 705
Target Start/End: Original strand, 21433929 - 21434112
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    ||||||||||||||||||| | ||| ||||||| ||||||||||||| |||||||||||  | |||||||||| ||||||| | ||||| ||  ||||||    
T  21433929 cacaagttatttgctaacccaattcagtgcaacttcacctacatctgagggcattcaagtcaagaaggaaatccactataatagtattaattcaaagtcc 21434028  T
Q  622 tacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagac 705  Q
    || || ||| |||| | ||| || |  ||| ||| ||||||||||||||||||||||||| ||| || | |||| |||||||||    
T  21434029 tatgtgaacaaccttcagttcactgccttctcacttaatcactacccgtgatatttctatataagactctcctagatatgagac 21434112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 773 - 864
Target Start/End: Complemental strand, 4650230 - 4650139
Alignment:
Q  773 ctccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    |||| |||||||||||| ||  ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||    
T  4650230 ctccgagaaacagaatc-actcttgcttaaaagcttacgagtgattcacaacttacaactcaactatcagtctaactctagcatcaaggtgat 4650139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 524 - 685
Target Start/End: Original strand, 25123321 - 25123484
Alignment:
Q  524 cacaagttatttgctaac-cagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| |||| || ||||||| |||||||||||||| ||||||||||||||| |||||||||||| ||||||| | ||||| ||  ||||||    
T  25123321 cacaaggtatttgttaacacaattcggtgtaacgtcacctacatgtgggggcattcaagccatgaaggaaatccactataatagtattaattcaaagtcc 25123420  T
Q  622 tacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaa 685  Q
    || || ||| ||||| |||| ||    ||| ||| |||||||||||  || |||||||||||||    
T  25123421 tatgtgaacaacctctggttcactatcttctcacttaatcactaccattggtatttctatctaa 25123484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 778 - 862
Target Start/End: Original strand, 24285157 - 24285242
Alignment:
Q  778 agaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactctaccatgaaggtg 862  Q
    |||||||||||| ||  ||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||| ||| ||||||    
T  24285157 agaaacagaatcaactattgcttaaaagcttacgggtgattcacaatttacaactcaactatcaatccaactctaacatcaaggtg 24285242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 705
Target Start/End: Original strand, 24285031 - 24285087
Alignment:
Q  649 ttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagac 705  Q
    ||||||||||||||||||| |||| |||||||||||| | || |||| |||||||||    
T  24285031 ttcgcacctaatcactaccagtgacatttctatctaagaaactcctagatatgagac 24285087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Complemental strand, 49086751 - 49086718
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    |||||||||||||||||||||||||| |||||||    
T  49086751 ccagttcggtgcaacgtcacctacatgtgggggc 49086718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 8e-51; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 246 - 368
Target Start/End: Original strand, 31525455 - 31525577
Alignment:
Q  246 ggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaa 345  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31525455 ggctgtgatttagtgtgtggttggcagttgagattaacattaattacagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaa 31525554  T
Q  346 gtctggcttttataataaaggat 368  Q
    |||||||||||||||||||||||    
T  31525555 gtctggcttttataataaaggat 31525577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 23538151 - 23538294
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||  |  |||||||||||    
T  23538151 tgaaaggtcatcagatcaaaggccgagatttagggtgtggttggcagatgagattagcattaattacagattagggaggaaaaataatgagtgattaggg 23538250  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||    
T  23538251 caacactgctagctcatcaagtctgactttaataataaaggatt 23538294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 543 - 730
Target Start/End: Complemental strand, 39668577 - 39668391
Alignment:
Q  543 agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtt 641  Q
    |||||||||||||||||  ||||||||||||| | ||| ||| |||||||||  | ||||| | ||||| ||||||| ||| | ||||| |||||| |||    
T  39668577 agttcggtgcaacgtcatttacatctgggggc-tccaacctaggaaggaaattcattataatagtattactttgaag-cctgcataaacaacctcctgtt 39668480  T
Q  642 tacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactc 730  Q
    |||  | ||||||||||||||||||||||||||||||||||||| |||| | || ||||||||| || | ||| ||| |||||||||||    
T  39668479 tactagcttcgcacctaatcactacccgtgatatttctatctaagacactcttagatatgagacccctctcacttcccctcaatcactc 39668391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 483 - 739
Target Start/End: Complemental strand, 11865333 - 11865078
Alignment:
Q  483 taacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaag 581  Q
    ||||||||||||| ||||||  ||  ||| ||| |||| ||||||||||||||| ||||| ||||||||||||||||  |||| |||||||||   ||||    
T  11865333 taacaaataacaacttaaagataaaggcaaaaagtaaaaggcacaagttatttgttaacccagttcggtgcaacgtcttctacgtctgggggctaccaag 11865234  T
Q  582 ctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttcta 680  Q
    | | |||| ||||  ||||||| | | ||||||||||| | | ||||||  ||||||| | |||  | |||||||||||||||||||| ||  |||||||    
T  11865233 ccaggaagaaaattcactataatagtgttagtttgaag-catgcgtaaaa-acctccgttctactagcttcgcacctaatcactacccatgtaatttcta 11865136  T
Q  681 tctaaaacacacctaaatatgagacaccccccacctcctctcaatcactcactagtgat 739  Q
    ||||| ||||||||| ||||||||| || | ||| ||| |||||||||| |||||||||    
T  11865135 tctaagacacacctagatatgagacccctctcacttccgctcaatcact-actagtgat 11865078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 773 - 843
Target Start/End: Complemental strand, 39668365 - 39668295
Alignment:
Q  773 ctccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtc 843  Q
    |||| ||||||| |||||||  |||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  39668365 ctccgagaaacataatccactcttgcttaaaagcttacaagtgattcacaaatacaattcaactatcagtc 39668295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 510 - 705
Target Start/End: Original strand, 24608673 - 24608866
Alignment:
Q  510 cagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaatat 608  Q
    |||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||| ||||||| |   ||||||   ||||||||  ||||||| | ||    
T  24608673 cagaaagtaaaaggcacaagttatttgttaacccagttcggtgcaacgtcacctacgtctggggactaccaagcttgaaaggaaattcactataata-at 24608771  T
Q  609 tagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagac 705  Q
    |||||||||| | ||  ||||  ||||||||| |||  | ||| |||||||||| | ||||||  |||| ||||||| |||| |||| |||||||||    
T  24608772 tagtttgaag-catatataaa-aacctccggtctactagcttcacacctaatcattccccgtgtaatttttatctaagacactcctagatatgagac 24608866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 798 - 864
Target Start/End: Complemental strand, 11865020 - 11864953
Alignment:
Q  798 cttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    ||||||||||||||||||||||| |  |||||||||||||| ||||| ||||||| ||| ||||||||    
T  11865020 cttaaaagcttacgagtgattcaaagcttacaactcaactaacagtccaactctagcatcaaggtgat 11864953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 576
Target Start/End: Original strand, 12607263 - 12607316
Alignment:
Q  524 cacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggggcat 576  Q
    |||||| |||||| ||| |||||||||||||||||||||||||||||| |||||    
T  12607263 cacaagatatttgataatccagttcggtgcaacgtcacctacatctggaggcat 12607316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 778 - 843
Target Start/End: Original strand, 12492851 - 12492918
Alignment:
Q  778 agaaacagaatccacctttgcttaaaagcttacgagtgattcac--aattacaactcaactatcagtc 843  Q
    ||||||||||||| |  |||||||||||||||  ||||||||||  || |||||||||||||||||||    
T  12492851 agaaacagaatccgctcttgcttaaaagcttataagtgattcacaaaaatacaactcaactatcagtc 12492918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 8652037 - 8652128
Alignment:
Q  277 gattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    ||||| |||||||||||| |||||||||||||   ||||  |||||||||||   ||| ||||   ||||||| ||||||||||||||||||    
T  8652037 gattaacattaattacggtttagggagggaaactgagaatggattagggcaagcatgctagcttggcaagtctagcttttataataaaggat 8652128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 8663844 - 8663935
Alignment:
Q  277 gattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    ||||| |||||||||||| |||||||||||||   ||||  |||||||||||   ||| ||||   ||||||| ||||||||||||||||||    
T  8663844 gattaacattaattacggtttagggagggaaactgagaatggattagggcaagcatgctagcttggcaagtctagcttttataataaaggat 8663935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Original strand, 13268845 - 13268878
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    ||||||||||||||| ||||||||||||||||||    
T  13268845 ccagttcggtgcaacttcacctacatctgggggc 13268878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 246 - 368
Target Start/End: Complemental strand, 33366047 - 33365925
Alignment:
Q  246 ggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaa 345  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33366047 ggctgtgatttagtgtgtggttggcagttgagattaacattaattatagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaa 33365948  T
Q  346 gtctggcttttataataaaggat 368  Q
    |||||||||||||||||||||||    
T  33365947 gtctggcttttataataaaggat 33365925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 524 - 730
Target Start/End: Complemental strand, 43902211 - 43902005
Alignment:
Q  524 cacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcc 621  Q
    |||||| |||||| ||| ||| |||||||||||||||||||||| ||||||| | ||||| | ||| |||||| ||||||| | |||||||||||||||     
T  43902211 cacaaggtatttgttaatccaattcggtgcaacgtcacctacatttgggggc-tccaagccaggaaagaaatctactataacagtattagtttgaagtc- 43902114  T
Q  622 tacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctct 721  Q
    ||| ||||| ||||| |||||||  | |||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||| || ||||  ||| ||    
T  43902113 tacataaacaacctctggtttactagcttcgcacctaatcactacccgtgatattcctatctaagacactcctagatatgagacccctcccatttcccct 43902014  T
Q  722 caatcactc 730  Q
    |||||||||    
T  43902013 caatcactc 43902005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 541 - 682
Target Start/End: Complemental strand, 19584069 - 19583927
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcctacgtaaactacctccgg 639  Q
    ||||||| |||||| ||||||||||||| |||| || ||||| | |||| ||||| ||||||| | |||||||| ||||||||| || ||| ||| ||||    
T  19584069 ccagttcagtgcaatgtcacctacatctaggggaatccaagccaggaagaaaatccactataatagtattagttcgaagtcctatgtgaacaacccccgg 19583970  T
Q  640 tttacaggtttcgcacctaatcactacccgtgatatttctatc 682  Q
    || ||    ||| |||| |||||||||||||||||||||||||    
T  19583969 ttcactaccttctcaccgaatcactacccgtgatatttctatc 19583927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 778 - 843
Target Start/End: Complemental strand, 43901959 - 43901894
Alignment:
Q  778 agaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtc 843  Q
    ||||||| |||||||  |||||||||||||||||| |||||||||  |||||||||||||||||||    
T  43901959 agaaacataatccactcttgcttaaaagcttacgattgattcacagatacaactcaactatcagtc 43901894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 594
Target Start/End: Complemental strand, 10082452 - 10082380
Alignment:
Q  523 gcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaat 594  Q
    ||||||||| |||| ||||| |||||||||||||||||||||||||| |||||   ||||||| |||||||||    
T  10082452 gcacaagttgtttgttaacccagttcggtgcaacgtcacctacatctaggggctaccaagctaggaaggaaat 10082380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 704
Target Start/End: Complemental strand, 2166020 - 2165922
Alignment:
Q  606 tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgaga 704  Q
    |||||||| ||||||||| || | | |||||||||  |||   ||| | |||||||||||||| |||||||||||||||| || |||||| ||||||||    
T  2166020 tattagttcgaagtcctatgtgatcaacctccggtgcacaaccttctcgcctaatcactacccatgatatttctatctaagactcacctagatatgaga 2165922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 603
Target Start/End: Original strand, 8531391 - 8531453
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa 603  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| |  ||||||||| |||||||    
T  8531391 ccagttcggtgcaacgtcacctacctctggtggcatccaagccagaaaggaaatccactataa 8531453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 618
Target Start/End: Complemental strand, 10189377 - 10189280
Alignment:
Q  523 gcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactat-aaaatattagtttgaag 618  Q
    ||||||||| |||| ||||| |||||||||||||||||||||||| | |||||   ||||||| |||||||||  ||||| | ||||||| |||||||    
T  10189377 gcacaagttgtttgttaacccagttcggtgcaacgtcacctacatgtaggggctaccaagctaggaaggaaattcactatgataatattaatttgaag 10189280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 728
Target Start/End: Complemental strand, 12019813 - 12019636
Alignment:
Q  552 caacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcctacgtaaactacctccggtttacaggttt 650  Q
    |||||||||||| |||||||||||| ||||| |  ||||||||| ||||||| | ||||| ||  |||||||| || ||| ||||| |||| || |  ||    
T  12019813 caacgtcacctatatctgggggcatccaagccacaaaggaaatccactataatagtattaattcaaagtcctatgtgaacaacctcaggttcaccgtctt 12019714  T
Q  651 cgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcac 728  Q
    | ||| |||||| |||  ||| |||||||||| || || | |||| ||||||||| || | ||| |||| ||||||||    
T  12019713 ctcacttaatcattacttgtggtatttctatcgaagactctcctagatatgagacccctctcacttcctttcaatcac 12019636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 731
Target Start/End: Original strand, 5535350 - 5535429
Alignment:
Q  652 gcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactca 731  Q
    ||||||||||||||||||||  ||| |||||||| ||||| ||| ||||||||| || | ||| ||  ||||||||||||    
T  5535350 gcacctaatcactacccgtgtaattactatctaagacacatctagatatgagacccctctcacttctcctcaatcactca 5535429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 728
Target Start/End: Original strand, 8532686 - 8532757
Alignment:
Q  657 taatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcac 728  Q
    ||||||||| ||||| ||||||||||||| || | ||||| |||||||| || | ||| |||||||||||||    
T  8532686 taatcactatccgtggtatttctatctaagactctcctaagtatgagacccctctcacttcctctcaatcac 8532757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 584
Target Start/End: Original strand, 27716326 - 27716387
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagcta 584  Q
    |||||| |||||| ||||| ||||| |||||||||||||||||| || |||||| |||||||    
T  27716326 cacaagatatttggtaacctagttcagtgcaacgtcacctacatatgcgggcatccaagcta 27716387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 474 - 739
Target Start/End: Complemental strand, 38802483 - 38802214
Alignment:
Q  474 caacacaattaacaaataacaag-ttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctggg 571  Q
    |||||||| |||||| ||||||  || |||||||||| ||||| || |||| ||||||||||||  || |||||| ||| |||| |||||||||||||||    
T  38802483 caacacaaataacaattaacaaacttgaagtaaattgtagaaaatagatggtacaagttatttgtaaatccagtttggtacaacatcacctacatctggg 38802384  T
Q  572 ggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggt-ttcgcacctaatcactacccg 669  Q
    ||||| ||||    |||||||||| ||||||| | ||||||||||||||| || ||||||  ||||| ||||||  || ||||||||||||||||| |||    
T  38802383 ggcatccaagtctggaaggaaatccactataatagtattagtttgaagtcttatgtaaacagcctccagtttacctgtcttcgcacctaatcactatccg 38802284  T
Q  670 tgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactcactagtgat 739  Q
    ||||||||||||||||  ||||||||||||| | || || | ||| |||| |||||||||||| ||||||    
T  38802283 tgatatttctatctaaggcacacctaaatataaaacccctctcacttcctttcaatcactcaccagtgat 38802214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 777 - 864
Target Start/End: Complemental strand, 38802179 - 38802092
Alignment:
Q  777 aagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    ||||||||||||||||  ||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||    
T  38802179 aagaaacagaatccactcttgattaaaagcttacgagtgattcacacttacaactcaactatcagtccaactctagcatcaaggtgat 38802092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 560 - 705
Target Start/End: Original strand, 14423719 - 14423864
Alignment:
Q  560 cctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcaccta 658  Q
    ||||||||||||| ||| ||||| | |||||||||| ||||||| | |||||||| ||||||||| || |   |||||||||| || |  ||| ||| |     
T  14423719 cctacatctgggg-catccaagccaggaaggaaatccactataatagtattagttcgaagtcctatgtgagtaacctccggttcactgccttctcacatg 14423817  T
Q  659 atcactacccgtgatatttctatctaaaacacacctaaatatgagac 705  Q
    |||||||||| |||||||||||||||| |||| | || |||||||||    
T  14423818 atcactacccatgatatttctatctaagacactcgtagatatgagac 14423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Original strand, 24482317 - 24482350
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    |||||| |||||||||||||||||||||||||||    
T  24482317 ccagtttggtgcaacgtcacctacatctgggggc 24482350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 541 - 704
Target Start/End: Complemental strand, 21713511 - 21713347
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccgg 639  Q
    |||||| |||||||| |||||||||| | ||||||| ||| | | |||||||||| ||||||| | ||||||||||||||| |  |||||| ||||| ||    
T  21713511 ccagtttggtgcaacatcacctacatgtaggggcatccaaaccaggaaggaaatccactataatagtattagtttgaagtcatgtgtaaacaacctctgg 21713412  T
Q  640 tttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgaga 704  Q
    ||||| |  |||||||||||||||||||| |||||||||||||||| || |||||| ||||||||    
T  21713411 tttactgccttcgcacctaatcactacccatgatatttctatctaagactcacctagatatgaga 21713347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 508 - 701
Target Start/End: Complemental strand, 31067679 - 31067483
Alignment:
Q  508 tgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aa 605  Q
    |||| ||| |||||| ||||||||||||| ||||| |||| ||||||||||||||||| |||||||||   |||   | |||||||||| ||||||| |     
T  31067679 tgcaaaaagtaaatgacacaagttatttgttaacctagtttggtgcaacgtcacctacgtctgggggctaccaattcaggaaggaaatccactataatag 31067580  T
Q  606 tattagtttgaagtcctacgtaaactacctccggtttac-aggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatg 701  Q
    |||||||||||||||||||| |||| ||||| ||||| |  |  ||| |||||||||||||||| |||||||||||||||| |||||| || |||||    
T  31067579 tattagtttgaagtcctacggaaacaacctctggtttgcttgccttcacacctaatcactacccatgatatttctatctaagacacacatagatatg 31067483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 226 - 369
Target Start/End: Complemental strand, 3081345 - 3081202
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||||| | | ||| ||||||||||||  ||||| ||||||| |||||||| |||||| | ||  ||||||||||||||  ||   |||||||||    
T  3081345 tgaaaggtcatgaaagcaacggctgagatttaatgtgtgattggcagatgagattaacattaaatgcgtgttagggagggaaaatgagggatgattaggg 3081246  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  3081245 caacactgccagctcatcaagtctggctttaatagtaaaggatt 3081202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 517 - 731
Target Start/End: Original strand, 15324990 - 15325208
Alignment:
Q  517 taaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagttt 614  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||   ||||| ||||| | |||| ||||| ||||||| | |||||||||    
T  15324990 taaatggcacaagttatttgttaacccagttcggtgcaacttcaccaacatcttaaggcatccaagccaggaagaaaatctactataatagtattagttt 15325089  T
Q  615 gaagtcctacgtaaactacctccggtttac-aggtttcgcacctaatcactacccgtga-tatttctatctaaaacacacctaaatatgagacacccccc 712  Q
     ||||||||||||||| |||| ||||||||  |  ||||||| |||||||||| ||||| ||||| ||||||| |||| |||| ||| || || || | |    
T  15325090 aaagtcctacgtaaacaaccttcggtttacttgccttcgcacttaatcactactcgtgattatttttatctaagacactcctagataagatacccctctc 15325189  T
Q  713 acctcctctcaatcactca 731  Q
    || |||| |||||||||||    
T  15325190 acttcctttcaatcactca 15325208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 541 - 705
Target Start/End: Original strand, 17395555 - 17395719
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccgg 639  Q
    |||||||||||||||||| ||||  | |||||||  |||||| | |||||||||| ||||||| | ||||||||||||| ||| | ||||| || |||||    
T  17395555 ccagttcggtgcaacgtcgcctaagtgtgggggctatcaagccaggaaggaaatccactataatagtattagtttgaag-cctgcataaacaacatccgg 17395653  T
Q  640 tttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagac 705  Q
    |||||  | |||||||||||||||| ||||||  |||||||||||| ||||||||| |||||||||    
T  17395654 tttactagattcgcacctaatcacttcccgtgtaatttctatctaagacacacctagatatgagac 17395719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 773 - 864
Target Start/End: Original strand, 15325247 - 15325338
Alignment:
Q  773 ctccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    ||||||||||| |||| |||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  15325247 ctccaagaaacggaattcactcttgcttaaaagcttacaagtgattcacaattacaactcaactatcagtcaaactctagcatcaagatgat 15325338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 497 - 739
Target Start/End: Complemental strand, 17841348 - 17841105
Alignment:
Q  497 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaacca-gttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 595  Q
    ||||| |||||| ||| || |||||| |||||||||||  |||| || |||||  |||||||||| ||||| |||||||||  ||||   ||||||| ||    
T  17841348 ttaaaataaattacagtaagtaaatgacacaagttatt--ctaatcaagttcgtggcaacgtcacatacatatgggggcatcaaagcctggaaggaagtc 17841251  T
Q  596 gactataaaa-tattagtttgaagtcctacgtaaactacctccggtttac-aggtttcgcacctaatcactacccgtgatatttctatctaaaacacacc 693  Q
     ||||||| | ||||||||||||||| ||||||||| |||||||||||||     ||| |  |||||||||||||||| |||||||||||||  |||||     
T  17841250 cactataatagtattagtttgaagtcatacgtaaacaacctccggtttactttccttctcttctaatcactacccgtggtatttctatctaagccacaca 17841151  T
Q  694 taaatatgagacaccccccacctcctctcaatcactcactagtgat 739  Q
    || ||||| ||| || ||||| |||| ||||||| |||| ||||||    
T  17841150 tagatatgggacccctcccacttcctatcaatcaatcaccagtgat 17841105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 704
Target Start/End: Original strand, 18593508 - 18593737
Alignment:
Q  475 aacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctggggg 573  Q
    ||||||| ||||||  ||||| || |||||||||| || || |||||  |||||  |||||| ||||| |||||||||||| ||||||||||||| ||||    
T  18593508 aacacaaataacaataaacaaatttaagtaaattgtaggaagtaaataacacaaagtatttgttaacccagttcggtgcaatgtcacctacatct-gggg 18593606  T
Q  574 cattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtga 672  Q
    ||| ||||| | ||||| |||| ||||||| ||||||||||||||||| |  ||| |  |||||  ||||||    ||| ||  || |||||||||||||    
T  18593607 catccaagccaagaagg-aatccactataataatattagtttgaagtcatttgtatataacctctagtttacttccttcacatttagtcactacccgtga 18593705  T
Q  673 tatttctatctaaaacacacctaaatatgaga 704  Q
    ||||||||||||| || |||||| ||||||||    
T  18593706 tatttctatctaagactcacctagatatgaga 18593737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 546 - 690
Target Start/End: Original strand, 8944737 - 8944881
Alignment:
Q  546 tcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttac 644  Q
    |||||||||| |||||||||| ||||||    |||  || |||||||||| ||||||| | ||||||||||||| ||| | ||||| ||||| |||||||    
T  8944737 tcggtgcaacatcacctacatttgggggttaccaaattaggaaggaaatctactataatagtattagtttgaag-cctgcataaacaacctctggtttac 8944835  T
Q  645 aggtttcgcacctaatcactacccgtgatatttctatctaaaacac 690  Q
      | ||||||||||||||||||| ||||||||||||||||| ||||    
T  8944836 tagcttcgcacctaatcactacctgtgatatttctatctaagacac 8944881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 10983161 - 10983229
Alignment:
Q  300 ggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    |||||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10983161 ggagggaaaatcaggattgattagggcaa-actgccagctcatcaagtctggcttttataataaaggatt 10983229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 773 - 864
Target Start/End: Complemental strand, 17841077 - 17840986
Alignment:
Q  773 ctccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    |||||| ||||| |||||||  |||| |||||||| || |||||||||||||||||||||||||||||||| ||||||| ||| || |||||    
T  17841077 ctccaataaacaaaatccactcttgcgtaaaagctgacaagtgattcacaattacaactcaactatcagtccaactctagcatcaacgtgat 17840986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 584
Target Start/End: Complemental strand, 40588850 - 40588739
Alignment:
Q  474 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggg 572  Q
    |||||||||||| ||  ||||| ||||||| |||||||| || |||||  |||| | |||||| ||| |||||||| |||||||||||||||||||||||    
T  40588850 caacacaattaataataaacaaattaaagtcaattgcaggaagtaaataacacagggtatttgttaatccagttcgatgcaacgtcacctacatctgggg 40588751  T
Q  573 gcattcaagcta 584  Q
    | || |||||||    
T  40588750 gtatccaagcta 40588739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 780 - 843
Target Start/End: Original strand, 45550281 - 45550344
Alignment:
Q  780 aaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtc 843  Q
    ||||| |||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  45550281 aaacataatccactcttgcttagaagcttacgagtgattcacaattacaactcaactattagtc 45550344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 773 - 864
Target Start/End: Complemental strand, 31067415 - 31067323
Alignment:
Q  773 ctccaagaaacagaatccacctttgcttaaaagcttacgagtgattcac-aattacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    |||| ||||| |||||| ||  ||||||||||||||| ||||||||||| |||||||||||||||||||||  ||||||| ||| ||| ||||    
T  31067415 ctccgagaaatagaatctactcttgcttaaaagcttatgagtgattcacaaattacaactcaactatcagttcaactctagcatcaagatgat 31067323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 739
Target Start/End: Complemental strand, 28645718 - 28645626
Alignment:
Q  649 ttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgag-acaccc-cccacctcctctcaatcactcactagtgat 739  Q
    |||||| ||||||||||||||||  |||||||||||| ||||||||| ||||||| || ||| | ||| ||| ||||||||||||| ||||||    
T  28645718 ttcgcagctaatcactacccgtgtaatttctatctaagacacacctagatatgagaactccctctcacttcccctcaatcactcaccagtgat 28645626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 773 - 864
Target Start/End: Original strand, 18593805 - 18593896
Alignment:
Q  773 ctccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    |||||| ||| ||||||||   || ||||||||||| |||||||||| |||||||||| |||||||||||  ||||||| ||| || |||||    
T  18593805 ctccaataaatagaatccattctttcttaaaagcttgcgagtgattcgcaattacaacgcaactatcagtttaactctagcatcaatgtgat 18593896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 778 - 864
Target Start/End: Original strand, 25867403 - 25867490
Alignment:
Q  778 agaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    ||||||||||| |||  |||||||||| ||||| |||||||||||| ||||||||||||||| |||| | ||| | ||| ||||||||    
T  25867403 agaaacagaattcactcttgcttaaaatcttacaagtgattcacaacttacaactcaactataagtccacctcaaacattaaggtgat 25867490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 603
Target Start/End: Original strand, 20186609 - 20186668
Alignment:
Q  544 gttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa 603  Q
    |||||||||| ||||||||||||||||||||||| |||  | ||| |||||| |||||||    
T  20186609 gttcggtgcagcgtcacctacatctgggggcattaaagtcaggaatgaaatccactataa 20186668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 776 - 837
Target Start/End: Complemental strand, 8162815 - 8162753
Alignment:
Q  776 caagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaacta 837  Q
    ||||||||| |||  || ||||||||||||||||| ||||||||||||  |||||||||||||    
T  8162815 caagaaacaaaatttacttttgcttaaaagcttacaagtgattcacaacatacaactcaacta 8162753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 784 - 864
Target Start/End: Original strand, 8944952 - 8945033
Alignment:
Q  784 agaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactctaccatgaaggtgat 864  Q
    |||||||||  ||||| ||||||||||||||||||||||| |||||||  ||||| || || ||||| | ||| ||||||||    
T  8944952 agaatccactcttgctaaaaagcttacgagtgattcacaacttacaacataactaacaatccaactccagcatcaaggtgat 8945033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 785 - 837
Target Start/End: Complemental strand, 28645581 - 28645528
Alignment:
Q  785 gaatccacctttgcttaaaagcttacgagtgattcaca-attacaactcaacta 837  Q
    ||||||||  |||||||||||||||||||||||||| |  ||||||||||||||    
T  28645581 gaatccactcttgcttaaaagcttacgagtgattcaaagcttacaactcaacta 28645528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 573
Target Start/End: Complemental strand, 28645858 - 28645793
Alignment:
Q  509 gcagaaattaaatggcacaagttatttgctaacca-gttcggtgcaacgtcacctacatctggggg 573  Q
    ||||||| |||| |||||| |||||||  |||||| |||| ||||||||||||||||||| |||||    
T  28645858 gcagaaagtaaaaggcacatgttatttattaaccaagttctgtgcaacgtcacctacatccggggg 28645793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 5189 - 5099
Alignment:
Q  279 ttagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    ||||||||||||| |||||| ||||| ||||  || |||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||    
T  5189 ttagcattaattatggattaaggaggaaaaataaggagtgattaggacaacactgccagcacatcaaatctggcttttatagtaaaggatt 5099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 5383 - 5323
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcatt 286  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |||||    
T  5383 tgaaaggtcatcagatcaaaggctgagatttagggtgtggttggcagatgggatttgcatt 5323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 524 - 623
Target Start/End: Complemental strand, 8831 - 8730
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||||||| ||| ||||| | |||| ||||| ||||||| | ||||||||||||||||    
T  8831 cacaagatatttgttaacccagtacggtgcaacgtcacctacatctggggacatccaagccaggaagaaaatctactataatagtattagtttgaagtcc 8732  T
Q  622 ta 623  Q
    ||    
T  8731 ta 8730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 773 - 823
Target Start/End: Original strand, 6002 - 6052
Alignment:
Q  773 ctccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa 823  Q
    |||| ||||| |||||||||| ||||||||||||||| |||||||||||||    
T  6002 ctccgagaaatagaatccaccattgcttaaaagcttatgagtgattcacaa 6052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 778 - 843
Target Start/End: Complemental strand, 27626 - 27559
Alignment:
Q  778 agaaacagaatccacctttgcttaaaagcttacgagtgattcac--aattacaactcaactatcagtc 843  Q
    ||||||||||||| |  |||||||||||||||  ||||||||||  || |||||||||||||||||||    
T  27626 agaaacagaatccgctcttgcttaaaagcttataagtgattcacaaaaatacaactcaactatcagtc 27559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Complemental strand, 2238 - 2205
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    ||||||||||||||| ||||||||||||||||||    
T  2238 ccagttcggtgcaacttcacctacatctgggggc 2205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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