View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5023-Insertion-8 (Length: 675)
Name: NF5023-Insertion-8
Description: NF5023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5023-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 295 - 579
Target Start/End: Original strand, 34020979 - 34021260
Alignment:
| Q |
295 |
aataaatactctacatacttccgaagtaattattggtactacttacatattgaatggaatttcgttttcagctataggggttacatattaattgatattg |
394 |
Q |
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| T |
34020979 |
aataaatactctacatacttccgaagtaattattggtactacttacat--tgaatggaatttcgttttcaactataggggttacatattaattgatattg |
34021076 |
T |
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| Q |
395 |
catatttgttgaaatttcataagatttatatcataggagttacatattctctcatctggctgatttattcatgtttattttatgtaacatgatttatttt |
494 |
Q |
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| T |
34021077 |
catatttgttgaaatttcataagagt-atatcataggagttacatattctctcatttgtctgatttattcatgcttattttatgtaacatgatttatttt |
34021175 |
T |
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| Q |
495 |
gtaaaacatgaatttgagtgttatttgaacatttgattcgcagtgtgcaaagaaactccaaattcatggataaatgcttagttgg |
579 |
Q |
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| T |
34021176 |
gtaaaacatgaatttgagtgttatttgaacatttgattcgcagtgtgcaaagaaactccaaatccatggataaatgcttagttgg |
34021260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 113 - 364
Target Start/End: Complemental strand, 35806131 - 35805871
Alignment:
| Q |
113 |
tgtacatcgttgcaagttatcttacatagaaaactcttgagcgtgtcttttaatttgaaaaactatttgcttcttccttttaaaatagtttctctctatc |
212 |
Q |
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| T |
35806131 |
tgtacattgttgctagttatcttacatggaaaactcttgagcgtgttttttaatttggaaaattatttgcttcttccttgtaaaatagttcctctctatc |
35806032 |
T |
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| Q |
213 |
tcttaaaatgcacaagaacatcatcatatttatgatgagaaatgtg----aacactgaacctagattttagcttaataataagttcaataaatac---tc |
305 |
Q |
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| T |
35806031 |
tcttaaaatgcacaagaacatcatcatagttatgatgagaaatgtgtaaacacactgaacttggattttagcttaataataagttcaataaatactcttc |
35805932 |
T |
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| Q |
306 |
tacatac----ttccgaagtaattattggtactacttacatattgaatggaatttcgttttca |
364 |
Q |
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| T |
35805931 |
tacatacttatttccgaagcaattattggtcctacttac--attgaatggaatttcgttttca |
35805871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 29123730 - 29123660
Alignment:
| Q |
377 |
acatattaattgatat---tgcatatttgttgaaatttcataagatttatatcataggagttacatattct |
444 |
Q |
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| T |
29123730 |
acatatcaattgatatccatgcatatttgttgaaatttcaaaagatttatatcatagaagttacatattct |
29123660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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