View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5023-Insertion-9 (Length: 613)
Name: NF5023-Insertion-9
Description: NF5023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5023-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 7 - 613
Target Start/End: Original strand, 37511091 - 37511683
Alignment:
| Q |
7 |
aaacacatgttgtagtatatatcttttaataaactagtgaaaatgagaatttcattgaatatctcgaccttttgtaaggtatcaatttgagttcctccct |
106 |
Q |
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| T |
37511091 |
aaacacatcttgtagtatatatcttttaataaactagtgaaaatgagaatttcattgaatatctcgaccttttgtaaggtatcaatttgagttcctccct |
37511190 |
T |
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| Q |
107 |
ttgatcttatttaactcatttcgttaatcaataaaaagttaatacaaagaggaacataatcatagatattgtgattaaagtaagaattggttgctccaac |
206 |
Q |
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| T |
37511191 |
ttaatcttatttaactcatttcgttaatcaataaaaagttaatacaaagaggaacataatcatagatattgtgactaaagtaagaattggttgctccaac |
37511290 |
T |
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| Q |
207 |
gaaactatgagaaaccatgtttatttgcatctgactaaactttacctcaaagttacattgcaaattaaaaatgtgtataacaacactcttaacaatcata |
306 |
Q |
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| T |
37511291 |
aaaactatgagaaaccatgtttatttttatctgactaaactttacctcaaagttt--------attaaaagt-----taatacctccctttt-aatcata |
37511376 |
T |
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| Q |
307 |
ttaaattcggattgaccttcaattctgccatacactgtagcattatattaaaagtcatacttgaaagacccatacaaacctttcaacatagcaatagtta |
406 |
Q |
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| T |
37511377 |
ttaaattcggattgaccttcaattctgccatacactgtagcattatattaaaagtcatacttgaaagacccatacaaacctttcaacatagcaatagtta |
37511476 |
T |
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| Q |
407 |
ctattgtctattccgtcgtacagaagattaggtcaagggatttctctaagtaaaggtgagtttgtatgattttattggcctatcaaatatgcatttttgc |
506 |
Q |
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| T |
37511477 |
ctattgtctattccgtcgtacagaagattaggtcaggggatttttctaagtaaaggtgagtttgtatgattctattggcctatcaaatatgtatttttgt |
37511576 |
T |
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| Q |
507 |
atatttgctatgctaatagttctattgcatcgctatgagagacaatgcatcttttacgagttatacattttgaaattaaacaccataatgagtttttaga |
606 |
Q |
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| T |
37511577 |
atctttgctatgctaatagttctattgcatcgctatgagagacaatacatcgtttacgagttatatattttgaaagtaaacaccataatgagtttttaga |
37511676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 29462780 - 29462829
Alignment:
| Q |
120 |
actcatttcgttaatcaataaaaagttaatacaaagaggaacataatcat |
169 |
Q |
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| T |
29462780 |
actcatttcattaatcaatgaagagttaatacaaagaggaacataatcat |
29462829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 29462902 - 29462939
Alignment:
| Q |
242 |
taaactttacctcaaagttacattgcaaattaaaaatg |
279 |
Q |
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| T |
29462902 |
taaactttacttcaaagttacattgcaaatttaaaatg |
29462939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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