View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5023_high_5 (Length: 400)
Name: NF5023_high_5
Description: NF5023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5023_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 42307654 - 42308027
Alignment:
| Q |
10 |
catcatcatggaaattagaaaaacttaccttttttagttcttctatgtctttaccagatttctcgataatggaacagatcctagcatgtgcatacaacaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42307654 |
catcatcatggaaattagaaaaacttaccttttttagttcttctatgtctttaccagatttctcgataatggaacagatcctagcatgtgcatacaacaa |
42307753 |
T |
|
| Q |
110 |
ataaacagcagtatttccctgtttgacaaaaggcttagaaaggtgagaatttatttatttttggactaaaaaggcgcgacatttgtaactttacattagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42307754 |
ataaacagcagtatttccctgtttgacaaaaggcttagaaaggtgagaatttatttatttttggactaaaaaggcgcgacatttgtaactttacattagt |
42307853 |
T |
|
| Q |
210 |
tggaaatattttctataagaaggcagcaggacaggtttgaggccatcaataatggtgttacaaaatctacaagattttctgttacttgacaagcatttga |
309 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42307854 |
tggaaatattttctataagaagggagcaggacaggtttgaggccatcaataatggtgttacaaaatctacaagattttctgttacttgacaagcatttga |
42307953 |
T |
|
| Q |
310 |
aaatagtaaatatgcaccttatcattaagcatctgatcaaagctgaaagtgtaattcgttgatctattgatctt |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42307954 |
aaatagtaaatatgcaccttatcattaagcatctgatcaaagctgaaagtgtaattcgttgatctattgatctt |
42308027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 51570664 - 51570528
Alignment:
| Q |
20 |
gaaattagaaaaacttaccttttttagttcttctatgtctttaccagatttctcgataatggaacagatcctagcatgtgcatacaacaaataaacagca |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51570664 |
gaaattagaaaagcttaccttttttagttcttctatgtctttaccagatttcctgataatggaacagatcctagcatgtgcatacaacaaataaacagca |
51570565 |
T |
|
| Q |
120 |
gtatttccctgtttgacaaaaggcttagaaaggtgaga |
157 |
Q |
| |
|
||||||||||||| || |||| || ||||||||||||| |
|
|
| T |
51570564 |
gtatttccctgttgga-aaaaagcatagaaaggtgaga |
51570528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 51570298 - 51570234
Alignment:
| Q |
319 |
atatgcaccttatcattaagcatctgatcaaagctgaaagtgtaattcgttgatctattgatctt |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| |||||||| |
|
|
| T |
51570298 |
atatgcaccttatcattaagcatctgatcaaagttgaaagtgtaatttgttgttctgttgatctt |
51570234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 47972359 - 47972483
Alignment:
| Q |
34 |
ttaccttttttagttcttctatgtctttaccagatttctcgataatggaacagatcctagcatgtgcatacaacaaataaacagcagtatttccctgttt |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47972359 |
ttaccttttttagttcttctatgtctttaccagatttcctgataatggaacagatcctagcatgtgcatacaacaaataaacagcggtatttccctgtaa |
47972458 |
T |
|
| Q |
134 |
gacaaaaggcttagaaaggtgagaa |
158 |
Q |
| |
|
||||||| || |||||||||||||| |
|
|
| T |
47972459 |
gacaaaaagcatagaaaggtgagaa |
47972483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 383
Target Start/End: Original strand, 47972694 - 47972782
Alignment:
| Q |
293 |
acttgacaagcatttgaaaatagtaaatatgcaccttatcattaagcatctgatcaaagctgaaagtgtaattcgttgatctattgatctt |
383 |
Q |
| |
|
||||||||| |||||||||| | || |||||||||| ||||||||||||||||||||| |||| |||||||| |||| |||||||||||| |
|
|
| T |
47972694 |
acttgacaaacatttgaaaacaata--tatgcaccttgtcattaagcatctgatcaaagttgaaggtgtaatttgttgttctattgatctt |
47972782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 34033347 - 34033220
Alignment:
| Q |
30 |
aaacttaccttttttagttcttctatgtctttaccagatttctcgataatggaacagatcctagcatgtgcatacaacaaataaacagcagtatttccct |
129 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||| |||||| ||| || ||||| ||||||||||||||||| | ||||||||| || ||||| |||| |
|
|
| T |
34033347 |
aaacttaccttctttacttcttcaatgtctttacccgatttcctgatgatagaacaaatcctagcatgtgcatagagcaaataaactgctgtattcccct |
34033248 |
T |
|
| Q |
130 |
gtttgacaaaaggcttagaaaggtgaga |
157 |
Q |
| |
|
||| |||| | ||||| ||||||||| |
|
|
| T |
34033247 |
gttacacaataaacttaggaaggtgaga |
34033220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University