View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5023_high_7 (Length: 317)
Name: NF5023_high_7
Description: NF5023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5023_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 9035601 - 9035315
Alignment:
| Q |
9 |
gacatcatcaccaaacctcttccaactaccaagtttaatgatctttcttccaagataagagttactaatggtaactttatcttgagggggcatattagag |
108 |
Q |
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| T |
9035601 |
gacatcctcaccaaacctcttccaactaccaagtttaatgatctttcttccaagataagagttactaatggtaactttatcttgagggggcatattagag |
9035502 |
T |
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| Q |
109 |
gataattatcatgtagagaataactcctatagttattgtttagatagcaacaaatcatatagttgactcatgacaatcaattgtcattcctagtcattac |
208 |
Q |
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| T |
9035501 |
gataattatcatgtagagaatatctcctgtagttattgtttagatagcaacaaattatatagttgactcatgacaatcaattgtcattcttagtcattac |
9035402 |
T |
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| Q |
209 |
agtatagttaactcacaggaatcaattgcaattcttagtcattatgcaattgatattcattcctagtttatagtatcagtattgtgt |
295 |
Q |
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| T |
9035401 |
agtatagttgactcacatgaatcaattgcaattcttagtcattatgcaattgatattcattcctagtttatagtatcagtattgtgt |
9035315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 103 - 295
Target Start/End: Complemental strand, 9039956 - 9039764
Alignment:
| Q |
103 |
ttagaggataattatcatgtagagaataactcctatagttattgtttagatagcaacaaatcatatagttgactcatgacaatcaattgtcattcctagt |
202 |
Q |
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| T |
9039956 |
ttagaggataattatcatgtggagaatatctcctgtagttattgtttagatagcaacaaatcatatagttgactcatgacaatcaattgtcattcttagt |
9039857 |
T |
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| Q |
203 |
cattacagtatagttaactcacaggaatcaattgcaattcttagtcattatgcaattgatattcattcctagtttatagtatcagtattgtgt |
295 |
Q |
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| T |
9039856 |
cattacagtatagttgactcacatgaatcaattgcaattcttagtcattatgcaattgatattcattcctagtttatagtatcagtattgtgt |
9039764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 36598984 - 36599119
Alignment:
| Q |
101 |
tattagaggataattatcatgtagagaataactcctatagttattgtttagatagcaacaaatcatatagttgactcatgacaatcaattgtcattccta |
200 |
Q |
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| T |
36598984 |
tattagaggataattatcatgcagaaaatatctcctatagttattgtttagatagcaacaaattatagagttgacttatgacaatcaattgtcattcata |
36599083 |
T |
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| Q |
201 |
gtcattacagtatagttaactcacaggaatcaattg |
236 |
Q |
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| T |
36599084 |
gtcattacaatatagttgactcggaggaatcaattg |
36599119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 45193101 - 45193151
Alignment:
| Q |
67 |
gagttactaatggtaactttatcttgagggggcatattagaggataattat |
117 |
Q |
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| T |
45193101 |
gagttactgatggtaactttattttgagggggtatattagaggataattat |
45193151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 45193025 - 45193103
Alignment:
| Q |
16 |
tcaccaaacctcttccaactaccaagtttaatgatctttcttccaagataagagttactaatggtaactttatcttgag |
94 |
Q |
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| T |
45193025 |
tcaccagaccccttgcagctaccaaattcaacgatatttcatccaagataaaagttactgatggtaactttattttgag |
45193103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 99 - 295
Target Start/End: Original strand, 21134878 - 21135074
Alignment:
| Q |
99 |
catattagaggataattatcatgtagagaataactcctatagttattgtttagatagcaacaaatcatatagttgactcatgacaatcaattgtcattcc |
198 |
Q |
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| T |
21134878 |
catattagaggataattatcatgtagagaatatctcctgtagttattgtttagatagcaacaaatcatatagttgactcatgacaatcaattgtcattct |
21134977 |
T |
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| Q |
199 |
tagtcattacagtatagttaactcacaggaatcaattgcaattcttagtcattatgcaattgatattcattcctagtttatagtatcagtattgtgt |
295 |
Q |
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| T |
21134978 |
tagtcattacagtatagttgactcacatgaatcaattgcaattcttagtcattatgcaattgatattcattcctagtttatagtatcagtattgtgt |
21135074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 100 - 295
Target Start/End: Original strand, 21128971 - 21129166
Alignment:
| Q |
100 |
atattagaggataattatcatgtagagaataactcctatagttattgtttagatagcaacaaatcatatagttgactcatgacaatcaattgtcattcct |
199 |
Q |
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| T |
21128971 |
atattagaggataattatcatgtagagaatatctcctgtagttattgtttagatagcaacaaatcatatagttgactcatgacaatcaattgtcattctt |
21129070 |
T |
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| Q |
200 |
agtcattacagtatagttaactcacaggaatcaattgcaattcttagtcattatgcaattgatattcattcctagtttatagtatcagtattgtgt |
295 |
Q |
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| T |
21129071 |
agtcattacagtatagttgactcacatgaatcaattgcaattcttagtcattatgcaattgatattcattcctagtttatagtatcagtattgtgt |
21129166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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