View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5023_low_10 (Length: 240)

Name: NF5023_low_10
Description: NF5023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5023_low_10
NF5023_low_10
[»] chr2 (3 HSPs)
chr2 (1-229)||(28741607-28741835)
chr2 (1-229)||(28733415-28733643)
chr2 (1-226)||(28717744-28717970)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 28741607 - 28741835
Alignment:
Q  1 tttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgggattcatccatgattgatatccaaatcttggaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28741607 tttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgtgattcatccatgattgatatccaaatcttggaag 28741706  T
Q  101 atatccctgtcaagttttttatctagaaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacatgacaa 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28741707 atatccctgtcaagttttttaactagaaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacatgacaa 28741806  T
Q  201 agattctagtttcacctaacatgatgatg 229  Q
    |||||||||||| ||||||||||||||||    
T  28741807 agattctagtttaacctaacatgatgatg 28741835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 28733415 - 28733643
Alignment:
Q  1 tttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgggattcatccatgattgatatccaaatcttggaag 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  28733415 tttgaattttattcattgactgaaacatcgttgatattagattatccacaattacgtgtcaattgggattcatccatgattgatatacaaatcttggaag 28733514  T
Q  101 atatccctgtcaagttttttatctagaaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacatgacaa 200  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||    
T  28733515 atatccctgtcaagttatttatctagaaatgcactgataatttagacaaaaaatatttgtagtaaagcatacatctaccttgtgtaccttcacatgacaa 28733614  T
Q  201 agattctagtttcacctaacatgatgatg 229  Q
    | |||||||||||||||||||||||||||    
T  28733615 atattctagtttcacctaacatgatgatg 28733643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 28717744 - 28717970
Alignment:
Q  1 tttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgggattcatccatgattgatatccaaatcttggaag 100  Q
    ||||||||| ||||| ||| ||||||||| ||| |||||||||||||||||||||| || ||||| ||||||||||||||| |||| || ||||||||||    
T  28717744 tttgaatttgattcactgactgaaacatcattggtattagattctccacaattatgcgttaattgagattcatccatgattaatatacatatcttggaag 28717843  T
Q  101 atatccctgtcaagttttttatctag-aaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacatgaca 199  Q
    ||||||||||||||  ||| |||||| |||||||| | |||||||||  |||| | ||||||||||| || |||||||||||||||| |||||||||| |    
T  28717844 atatccctgtcaagaatttcatctagaaaatgcaccgataatttagagggaaattctttgtagtaaagcatacatctaccttgtgtaccttcacatgaaa 28717943  T
Q  200 aagattctagtttcacctaacatgatg 226  Q
    || |||||||||||||  |||||||||    
T  28717944 aatattctagtttcactaaacatgatg 28717970  T

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