View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5023_low_12 (Length: 239)

Name: NF5023_low_12
Description: NF5023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5023_low_12
NF5023_low_12
[»] chr2 (15 HSPs)
chr2 (152-228)||(28741301-28741377)
chr2 (106-227)||(19616340-19616461)
chr2 (5-56)||(28741543-28741594)
chr2 (1-43)||(28733364-28733406)
chr2 (110-227)||(15342279-15342397)
chr2 (1-50)||(28670874-28670923)
chr2 (107-190)||(21626586-21626670)
chr2 (160-227)||(28719057-28719124)
chr2 (55-90)||(28741387-28741422)
chr2 (153-228)||(29800419-29800494)
chr2 (11-49)||(28717704-28717742)
chr2 (1-50)||(28642291-28642340)
chr2 (1-50)||(28651152-28651201)
chr2 (1-50)||(28675018-28675067)
chr2 (1-50)||(28691494-28691543)
[»] chr4 (4 HSPs)
chr4 (106-227)||(30040750-30040872)
chr4 (110-227)||(11420924-11421042)
chr4 (106-190)||(19365423-19365508)
chr4 (122-213)||(9537881-9537973)
[»] chr6 (6 HSPs)
chr6 (124-190)||(23846700-23846767)
chr6 (106-227)||(20736604-20736726)
chr6 (106-227)||(21994492-21994614)
chr6 (106-220)||(4073480-4073595)
chr6 (106-227)||(8612820-8612941)
chr6 (154-227)||(22560460-22560533)
[»] scaffold0466 (1 HSPs)
scaffold0466 (110-227)||(13225-13343)
[»] scaffold0136 (1 HSPs)
scaffold0136 (107-228)||(8636-8758)
[»] chr7 (11 HSPs)
chr7 (106-227)||(3587813-3587935)
chr7 (107-225)||(15170307-15170428)
chr7 (106-227)||(19393700-19393822)
chr7 (106-227)||(28130465-28130587)
chr7 (106-190)||(18259437-18259522)
chr7 (106-227)||(47167135-47167257)
chr7 (106-190)||(2935935-2936020)
chr7 (119-195)||(19388469-19388546)
chr7 (122-190)||(31190756-31190825)
chr7 (106-227)||(15999886-16000008)
chr7 (106-227)||(24443603-24443724)
[»] chr3 (4 HSPs)
chr3 (106-225)||(15526658-15526777)
chr3 (106-225)||(11787491-11787611)
chr3 (106-225)||(25979006-25979126)
chr3 (106-176)||(28088120-28088192)
[»] chr5 (10 HSPs)
chr5 (106-228)||(20100518-20100641)
chr5 (106-227)||(7865710-7865831)
chr5 (106-227)||(12765270-12765391)
chr5 (106-227)||(5097555-5097677)
chr5 (106-227)||(12704154-12704275)
chr5 (106-227)||(39535368-39535490)
chr5 (106-227)||(9812013-9812134)
chr5 (107-227)||(31652060-31652181)
chr5 (106-228)||(26245006-26245129)
chr5 (106-190)||(26130006-26130091)
[»] scaffold0034 (1 HSPs)
scaffold0034 (107-227)||(83291-83412)
[»] scaffold0031 (1 HSPs)
scaffold0031 (106-226)||(40265-40386)
[»] scaffold0376 (1 HSPs)
scaffold0376 (106-227)||(11806-11927)
[»] scaffold0063 (1 HSPs)
scaffold0063 (106-225)||(45226-45346)
[»] scaffold0086 (1 HSPs)
scaffold0086 (119-227)||(53682-53791)
[»] chr1 (2 HSPs)
chr1 (106-190)||(8727568-8727653)
chr1 (108-227)||(633840-633960)
[»] chr8 (3 HSPs)
chr8 (106-225)||(18835254-18835374)
chr8 (106-227)||(22659770-22659894)
chr8 (106-228)||(20539672-20539798)


Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 28741377 - 28741301
Alignment:
Q  152 aatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28741377 aatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtatgtagactgatgat 28741301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 19616340 - 19616461
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||  ||| | ||||||| ||||||||| ||||||||||||| | || |||   ||    
T  19616340 tgacttaatcataagattacattaacataaagaacactattcttaaatgtatttgtagtcaagctttaatatgaattgggataata-ataagcgtcgaga 19616438  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| |||||||||||||    
T  19616439 ctattatgtatgtagactgatga 19616461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 28741594 - 28741543
Alignment:
Q  5 tagaattgatttaccaggaatccatgatgatcctgttttgagagatacagtt 56  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28741594 tagaattgatttaccaggaatccatgatgatcttgttttgagagatacagtt 28741543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28733406 - 28733364
Alignment:
Q  1 tccctagaattgatttaccaggaatccatgatgatcctgtttt 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28733406 tccctagaattgatttaccaggaatccatgatgatcctgtttt 28733364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 15342397 - 15342279
Alignment:
Q  110 ttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 208  Q
    ||||| || ||||||||||| |||||| |||||||||||| ||  ||| | |||||||  ||||||||||||||||||||||  ||| |||   ||||||    
T  15342397 ttaatcatgagattacattaccataaagaacactattctttaatgtatatgtagtcaagatttaatataaattgggataataataaagcgtggagactat 15342298  T
Q  209 tatgtgtgtagactgatga 227  Q
    ||||| |||||| ||||||    
T  15342297 tatgtatgtagattgatga 15342279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28670923 - 28670874
Alignment:
Q  1 tccctagaattgatttaccaggaatccatgatgatcctgttttgagagat 50  Q
    |||||| |||||| ||| ||||||||||||||||||||||||||||||||    
T  28670923 tccctacaattgacttaacaggaatccatgatgatcctgttttgagagat 28670874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 21626586 - 21626670
Alignment:
Q  107 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 190  Q
    |||||||| || | |||||||||||||||| |||| ||||||||||| ||||   ||||||| ||||||||||| ||||||||||    
T  21626586 gacttaatcatgacattacattaacataaagaacaatattcttaaaagtatccgaagtcaaattttaatataaaatgggataata 21626670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 28719124 - 28719057
Alignment:
Q  160 tagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatga 227  Q
    |||||||  |||| ||||||||| |||||||  ||||||||  ||||||||||| |||||||||||||    
T  28719124 tagtcaagttttagtataaattgagataataataaaacgtagagactattatgtatgtagactgatga 28719057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 28741422 - 28741387
Alignment:
Q  55 ttattatgcttgttgtaagattaataaagagatagt 90  Q
    ||||||| ||||||||||||||||||||||||||||    
T  28741422 ttattatacttgttgtaagattaataaagagatagt 28741387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 29800419 - 29800494
Alignment:
Q  153 atatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgat 228  Q
    |||| |||| |||| |||||||| ||||||||||||||  ||| || |  ||||||||||| ||||||||||||||    
T  29800419 atatatatattcaagctttaatacaaattgggataataataaagcggaaagactattatgtatgtagactgatgat 29800494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 28717742 - 28717704
Alignment:
Q  11 tgatttaccaggaatccatgatgatcctgttttgagaga 49  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  28717742 tgatttactaggaatccatgatggtcctgttttgagaga 28717704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28642340 - 28642291
Alignment:
Q  1 tccctagaattgatttaccaggaatccatgatgatcctgttttgagagat 50  Q
    |||||| |||||| |||  |||||||||||||||||||| ||||||||||    
T  28642340 tccctacaattgacttaaaaggaatccatgatgatcctgctttgagagat 28642291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28651201 - 28651152
Alignment:
Q  1 tccctagaattgatttaccaggaatccatgatgatcctgttttgagagat 50  Q
    |||||| |||||| |||  |||||||||||||||||||| ||||||||||    
T  28651201 tccctacaattgacttaaaaggaatccatgatgatcctgctttgagagat 28651152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28675067 - 28675018
Alignment:
Q  1 tccctagaattgatttaccaggaatccatgatgatcctgttttgagagat 50  Q
    |||||| |||||| ||| |||||||||| ||||||||| |||||||||||    
T  28675067 tccctacaattgacttaacaggaatccacgatgatcctcttttgagagat 28675018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28691543 - 28691494
Alignment:
Q  1 tccctagaattgatttaccaggaatccatgatgatcctgttttgagagat 50  Q
    |||||| ||||||  || |||||||||||||||||| |||||||||||||    
T  28691543 tccctacaattgacctaacaggaatccatgatgatcttgttttgagagat 28691494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 30040872 - 30040750
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||  ||||||||||||| | ||||||| |||||||||||||  ||| | |   ||    
T  30040872 tgacttaatcatgagattacattaacataaagaacactattcttaaatgtatctatagtcaagcgttaatatgaattgggataataataaagcatcgaga 30040773  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| | |||||||||||    
T  30040772 ctattatgtatatagactgatga 30040750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 11420924 - 11421042
Alignment:
Q  110 ttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 208  Q
    ||||| || |||||||||||||||||| ||| |||||||||||  ||||  ||||||||||||||||| |||| ||||||||  ||| | |   ||||||    
T  11420924 ttaatcattagattacattaacataaagaacgctattcttaaatgtatccgtagtcaaactttaatatgaattaggataataataaagcttcgagactat 11421023  T
Q  209 tatgtgtgtagactgatga 227  Q
    ||||| |||||||||||||    
T  11421024 tatgtatgtagactgatga 11421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 19365423 - 19365508
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 190  Q
    ||||||||| || ||||||||||||| |||| ||| |||||||||||  ||||  ||||||| ||||||||||||||||| |||||    
T  19365423 tgacttaatcatgagattacattaacgtaaagaacgctattcttaaatgtatccgtagtcaagctttaatataaattggggtaata 19365508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 9537881 - 9537973
Alignment:
Q  122 ttacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgt 213  Q
    ||||||||||||||| ||| |||||||||||  ||| | |||||||  |||||||||| ||||||||| |  |||||| || |||||||||||    
T  9537881 ttacattaacataaagaacgctattcttaaatgtatatgtagtcaatatttaatataatttgggataacaataaaacgcatagactattatgt 9537973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 23846767 - 23846700
Alignment:
Q  124 acattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 190  Q
    ||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  23846767 acatttacataaagaacactattcttaaaagtatctgtagtcaaactttaatataaattgggataata 23846700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 20736726 - 20736604
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || |||||||||||||||||| |||| ||||||||||  ||||| ||||||| ||||||||  || ||||||||||  ||| |||   ||    
T  20736726 tgacttaatcatgagattacattaacataaagaacattattcttaaatgtatctgtagtcaagctttaataagaactgggataataataaagcgtcgaga 20736627  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| |||||||||||||    
T  20736626 ctattatgtatgtagactgatga 20736604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 21994492 - 21994614
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || |||||||||||| ||||| |||||||||||||||  |||| |||||| | |||||||||||||||| ||||||  ||| || |  ||    
T  21994492 tgacttaatcatgagattacattaatataaagaacactattcttaaatgtatccatagtcgagctttaatataaattggaataataataaagcgcaaaga 21994591  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||| | |||||||||||||    
T  21994592 ctattatatatgtagactgatga 21994614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 220
Target Start/End: Original strand, 4073480 - 4073595
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||||   ||| |||| ||||||||||| ||||  |||||||||||||||||||||  ||||||||  ||||||||  ||    
T  4073480 tgacttaatcatgagattacattaatggaaagaacattattcttaaaagtatccgtagtcaaactttaatataaatcaggataataataaaacgtagaga 4073579  T
Q  205 ctattatgtgtgtaga 220  Q
    ||||||||| ||||||    
T  4073580 ctattatgtttgtaga 4073595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 8612820 - 8612941
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  8612820 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 8612918  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| |||||||||||||    
T  8612919 ctattatgtatgtagactgatga 8612941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 22560533 - 22560460
Alignment:
Q  154 tatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatga 227  Q
    |||| |||||||| |||||||||||||||||||||||  ||| || |  ||||||||||  ||||||| |||||    
T  22560533 tatccatagtcaagctttaatataaattgggataataataaagcgcagagactattatgcatgtagaccgatga 22560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 13343 - 13225
Alignment:
Q  110 ttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 208  Q
    ||||| || |||||||||||||||||||| || ||||||||||  |||| |||||||| ||||||||| |||||||||||||  ||| |||   ||||||    
T  13343 ttaatcatgagattacattaacataaaaaacagtattcttaaatgtatccatagtcaagctttaatattaattgggataataataaagcgtcgagactat 13244  T
Q  209 tatgtgtgtagactgatga 227  Q
    ||||| ||||||| |||||    
T  13243 tatgtatgtagaccgatga 13225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 8636 - 8758
Alignment:
Q  107 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 205  Q
    |||||||| || |||||||||||||||||| |||||||||||||||| ||| | |||||||  |||||||||||||| |||| ||  ||| ||||  |||    
T  8636 gacttaatcatgagattacattaacataaagaacactattcttaaaagtatttgtagtcaagttttaatataaattgagatagtaataaagcgtagagac 8735  T
Q  206 tattatgtgtgtagactgatgat 228  Q
    || ||||| |||||| |||||||    
T  8736 taatatgtatgtagattgatgat 8758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 3587813 - 3587935
Alignment:
Q  106 tgacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||| |||||||||||| |  ||||||||||   |||||||||||| |||||||||||||||||||||||  ||| ||||  ||    
T  3587813 tgacttaatcatgagattactttaacataaaaaacgttattcttaaatgaatctatagtcaagctttaatataaattgggataataataaagcgtagaga 3587912  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| | ||||| |||||    
T  3587913 ctattatgtatatagaccgatga 3587935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 15170428 - 15170307
Alignment:
Q  107 gacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatata--aattgggataatataaaaacgtattg 203  Q
    |||||||| || |||||||||||||||||||| |  |||||||||| |||| | ||||||| ||||||||||  |||||||||||||  ||| ||||  |    
T  15170428 gacttaatcatgagattacattaacataaaaaacgttattcttaaatatatttgtagtcaagctttaatatataaattgggataataataaagcgtagag 15170329  T
Q  204 actattatgtgtgtagactgat 225  Q
    |||||||| | |||||||||||    
T  15170328 actattatatatgtagactgat 15170307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 19393822 - 19393700
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || |||||||||||||||||| ||  |||||||||||  ||||| ||||||| ||||||||| | ||||||||||   ||| |||   ||    
T  19393822 tgacttaatcatgagattacattaacataaagaatgctattcttaaatgtatctgtagtcaagctttaatatgagttgggataattataaagcgtcgaga 19393723  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| |||||||| ||||    
T  19393722 ctattatgtatgtagactaatga 19393700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 28130465 - 28130587
Alignment:
Q  106 tgacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| |||||||| | |||||||||||  ||||| ||||||| ||||||||| |||  ||||||||  ||| |||   ||    
T  28130465 tgacttaatcatgagattacattatcataaaaaacgctattcttaaatgtatctgtagtcaagctttaatatgaataaggataataataaagcgtcgaga 28130564  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||  |||||||||||||    
T  28130565 ctattatgcatgtagactgatga 28130587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 18259522 - 18259437
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 190  Q
    ||||||||| || ||||||||||| |||||| |||| ||||||||||  |||| |||||||| ||||||||| |||| ||||||||    
T  18259522 tgacttaatcatgagattacattatcataaagaacattattcttaaatgtatccatagtcaagctttaatatgaattaggataata 18259437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 47167257 - 47167135
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    |||||| || || ||||||||||| |||||| |||  ||||||||||  ||| | ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  47167257 tgactttatcatgagattacattatcataaagaacgttattcttaaatgtatttgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 47167158  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| |||||||||||||    
T  47167157 ctattatgtatgtagactgatga 47167135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 2935935 - 2936020
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 190  Q
    ||||||||| || |||||||||||||||||| |||  ||||||||||  ||||  ||||||| ||||||||| ||||| |||||||    
T  2935935 tgacttaatcatgagattacattaacataaagaacgttattcttaaatgtatccgtagtcaagctttaatatgaattgcgataata 2936020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 19388469 - 19388546
Alignment:
Q  119 agattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaa 195  Q
    ||||||||| || ||||| ||||||||| |||| | ||||| ||||||| ||| ||||||||||||||||||| ||||    
T  19388469 agattacatcaatataaagaacactatttttaatagtatctgtagtcaagcttaaatataaattgggataataaaaaa 19388546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 31190825 - 31190756
Alignment:
Q  122 ttacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 190  Q
    ||||||||||||||| |||| |||| ||||| |||||  ||||||| ||||| |||||||||||||||||    
T  31190825 ttacattaacataaataacattattattaaatatatccttagtcaagctttagtataaattgggataata 31190756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 15999886 - 16000008
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| | |||| ||| ||||| |||||  ||||  ||||||||||||||||| |||| ||||||||  ||| |||   ||    
T  15999886 tgacttaatcatgagattacattaccttaaagaacgctattattaaatgtatccttagtcaaactttaatatgaattaggataataataaagcgtcgaga 15999985  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    || |||||| || ||||||||||    
T  15999986 cttttatgtatgcagactgatga 16000008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 24443724 - 24443603
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| |  |||||||||||||||||| |||  ||||||||||  ||||  ||| ||| ||||||||||||| ||||| |||  |||  |||  ||    
T  24443724 tgacttaatcacgagattacattaacataaagaacgatattcttaaatgtatccgtagccaagctttaatataaat-gggatgataacaaagtgtaaaga 24443626  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| |||||||||||||    
T  24443625 ctattatgtatgtagactgatga 24443603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 15526658 - 15526777
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||   || | ||||||| |||||||||||| || |||||||  ||| ||||  ||    
T  15526658 tgacttaatcatgagattacattaacataaagaacactattcttaaatgcatatgtagtcaagctttaatataaa-tgagataataataaagcgtagaga 15526756  T
Q  205 ctattatgtgtgtagactgat 225  Q
    ||||||||| |||||||||||    
T  15526757 ctattatgtttgtagactgat 15526777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 11787491 - 11787611
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| |||||| |||  ||||||||||  ||||| ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  11787491 tgacttaatcatgagattacattatcataaagaacgttattcttaaatgtatctgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 11787590  T
Q  205 ctattatgtgtgtagactgat 225  Q
    ||||||||| ||| |||||||    
T  11787591 ctattatgtatgttgactgat 11787611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 25979126 - 25979006
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| |||||| ||| |||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  25979126 tgacttaatcatgagattacattatcataaagaacgctattcttaaatgtatccgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 25979027  T
Q  205 ctattatgtgtgtagactgat 225  Q
    ||||||||| ||| |||||||    
T  25979026 ctattatgtatgttgactgat 25979006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 28088120 - 28088192
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatat 176  Q
    ||||||||| || ||||||||||| |||||| ||||||||||||||| | |||  |||||||| |||||||||    
T  28088120 tgacttaatcatgagattacattatcataaagaacactattcttaaatagatccgtagtcaaagctttaatat 28088192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 20100641 - 20100518
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||||| |||| |||  ||||||||||  |||   |||| ||||||||||||||||||||||||||  ||| |||   ||    
T  20100641 tgacttaatcatgagattacattaacgtaaataacgttattcttaaatgtattcgtagttaaactttaatataaattgggataataataaagcgtcacga 20100542  T
Q  205 ctattatgtgtgtagactgatgat 228  Q
    ||||||||| ||||||||||||||    
T  20100541 ctattatgtatgtagactgatgat 20100518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 7865831 - 7865710
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  7865831 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 7865733  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| |||||||||||||    
T  7865732 ctattatgtatgtagactgatga 7865710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 12765391 - 12765270
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  12765391 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 12765293  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| |||||||||||||    
T  12765292 ctattatgtatgtagactgatga 12765270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 5097555 - 5097677
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || |||||||||||||||||| |||  ||||||||||  ||| | |||||||  |||||||| |||| ||||||||  ||| |||   ||    
T  5097555 tgacttaatcatgagattacattaacataaagaacgttattcttaaatgtatttgtagtcaagttttaatatgaattaggataataataaagcgtcgaga 5097654  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| |||||||||||||    
T  5097655 ctattatgtatgtagactgatga 5097677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 12704275 - 12704154
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  12704275 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 12704177  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||| ||||| |||||||||||||    
T  12704176 ctactatgtatgtagactgatga 12704154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 39535368 - 39535490
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| | |||| |||  ||||||||||  ||||  || |||||||||||||| |||||||||||||  ||| |||   ||    
T  39535368 tgacttaatcatgagattacattaccttaaagaacgatattcttaaatgtatccgtactcaaactttaatatgaattgggataataataaagcgtcaaga 39535467  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| |||||||||||||    
T  39535468 ctattatgtatgtagactgatga 39535490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 9812134 - 9812013
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| |||||| ||||||||| |||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  9812134 tgacttaatcatgagattacattatcataaagaacactattattaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 9812036  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||| ||||| |||||||||||||    
T  9812035 ctactatgtatgtagactgatga 9812013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 31652181 - 31652060
Alignment:
Q  107 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 205  Q
    ||||||||  |||||||||||||||||||| || | ||||||||||| | || || ||| | ||||| ||||||||| || ||||  ||||| ||  |||    
T  31652181 gacttaatcgtaagattacattaacataaagaatattattcttaaaagtttccatggtcgagctttattataaattgagacaatagtaaaacatagagac 31652082  T
Q  206 tattatgtgtgtagactgatga 227  Q
    || ||||| |||||||||||||    
T  31652081 tactatgtatgtagactgatga 31652060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 228
Target Start/End: Original strand, 26245006 - 26245129
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| |||||| ||   ||||||||||  ||||| || |||| ||||||||| |||  ||||||||  ||| |||   ||    
T  26245006 tgacttaatcatgagattacattatcataaagaatgttattcttaaatgtatctgtaatcaagctttaatatgaataaggataataataaagcgtcgaga 26245105  T
Q  205 ctattatgtgtgtagactgatgat 228  Q
    ||||||||| ||||||||||||||    
T  26245106 ctattatgtatgtagactgatgat 26245129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 26130091 - 26130006
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 190  Q
    |||||||||  ||| ||||| ||||||| || ||| || ||||||||  ||||  ||||||| |||||||||||||||||||||||    
T  26130091 tgacttaatcctaatattactttaacattaagaacgctcttcttaaatgtatccgtagtcaagctttaatataaattgggataata 26130006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 83412 - 83291
Alignment:
Q  107 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 205  Q
    ||||||||| | |||||| ||| ||| ||| || ||||||||||||| ||||  ||||| || |||||||||||||| |||||||  |||  |||| |||    
T  83412 gacttaattgtgagattaaattcacacaaagaatactattcttaaaagtatccgtagtcgaaatttaatataaattgagataataataaagtgtatagac 83313  T
Q  206 tattatgtgtgtagactgatga 227  Q
    |||||||| |||||||||||||    
T  83312 tattatgtatgtagactgatga 83291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 40386 - 40265
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||| ||||||||| |||| ||| |||||||||||  |||| |||||||| ||||||||||||||| |||||||  ||| ||    ||    
T  40386 tgacttaatcatgagaatacattaacgtaaagaacgctattcttaaatgtatccatagtcaagctttaatataaattgagataataataaagcgccgaga 40287  T
Q  205 ctattatgtgtgtagactgatg 226  Q
    ||||||||| ||||||||||||    
T  40286 ctattatgtatgtagactgatg 40265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 11927 - 11806
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||| ||||||| ||||||||| |||| ||||||||  ||| |||    |    
T  11927 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatctgtagtcaatctttaatat-aattaggataataataaagcgtcgaaa 11829  T
Q  205 ctattatgtgtgtagactgatga 227  Q
    ||||||||| |||||| ||||||    
T  11828 ctattatgtatgtagattgatga 11806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 45346 - 45226
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||| |||||| ||| |||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  45346 tgacttaatcatgagattacattatcataaagaacgctattcttaaatgtatccgtagtcaagctttaatattaattaggataataataaagcgtcgaga 45247  T
Q  205 ctattatgtgtgtagactgat 225  Q
    ||||||||| ||| |||||||    
T  45246 ctattatgtatgttgactgat 45226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 53682 - 53791
Alignment:
Q  119 agattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgt 217  Q
    |||||||||||||||||| |||||||||||||||  ||||  || |||| ||||||||| |||| ||||||||  |||  ||   ||||||||||| |||    
T  53682 agattacattaacataaagaacactattcttaaatgtatccgtattcaagctttaatatgaattaggataataataaagtgtcaagactattatgtatgt 53781  T
Q  218 agactgatga 227  Q
    ||| ||||||    
T  53782 agattgatga 53791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 8727568 - 8727653
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 190  Q
    ||||| ||| |||||||||| |||||||||| |||  |||||| |||  ||||| ||||||||||||||||| ||||| |||||||    
T  8727568 tgactaaatcataagattactttaacataaagaacgttattctgaaatctatctgtagtcaaactttaatatgaattgagataata 8727653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 633840 - 633960
Alignment:
Q  108 acttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgact 206  Q
    ||||||| || |||||| |||| |||||| |||| |||| |||||  ||||  ||||||| ||||||||| |||  ||||||||  ||| |||   ||||    
T  633840 acttaatcatgagattaaattatcataaagaacattatttttaaatgtatccgtagtcaagctttaatatgaataaggataataacaaagcgtcgagact 633939  T
Q  207 attatgtgtgtagactgatga 227  Q
    ||||||| |||||||||||||    
T  633940 attatgtatgtagactgatga 633960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 18835254 - 18835374
Alignment:
Q  106 tgacttaattataagattacattaacat-aaaaacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 204  Q
    ||||||||| || ||||||||||||||| ||||||  |||||||||| |||||| ||||| | |||||||||  ||||  ||||||  ||| | |   ||    
T  18835254 tgacttaatcatgagattacattaacataaaaaacgttattcttaaatatatctgtagtccagctttaatatggattgaaataataataaagcatcgaga 18835353  T
Q  205 ctattatgtgtgtagactgat 225  Q
    ||||||||| |||||||||||    
T  18835354 ctattatgtatgtagactgat 18835374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 22659894 - 22659770
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaat-tgggataatataaaaacgtatt 202  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  |||||||| ||||||||| |||   ||||||||  ||| |||       
T  22659894 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaaagctttaatatgaataaaggataataataaagcgtcaa 22659795  T
Q  203 gactattatgtgtgtagactgatga 227  Q
    ||||||||||| |||||||||||||    
T  22659794 gactattatgtatgtagactgatga 22659770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 20539798 - 20539672
Alignment:
Q  106 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata-taaaaa--cgtat 201  Q
    ||||||||| ||  ||||||||||||||||| |||  |||||||||| | || | |||| || ||||||| ||||||||||||||| ||| ||  || ||    
T  20539798 tgacttaatcatgtgattacattaacataaagaacgttattcttaaatacatttgtagtaaagctttaatgtaaattgggataataataataaagcgcat 20539699  T
Q  202 tgactattatgtgtgtagactgatgat 228  Q
     ||| ||||||| ||||||||||||||    
T  20539698 agacgattatgtatgtagactgatgat 20539672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University