View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5023_low_2 (Length: 492)
Name: NF5023_low_2
Description: NF5023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5023_low_2 |
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| [»] scaffold0262 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 36664450 - 36663970
Alignment:
| Q |
18 |
agttagaggaaaaagggggctactttgcttagcggcggcggagatagagctatcattggcgacgctttcagctcaacaacatccatctctcacattcacg |
117 |
Q |
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| T |
36664450 |
agttagaggaaaaagagggctactttgcttagcggcggcggagatagagctatcattggcgacgctttcagctcaacaacatccatctctcacattcacg |
36664351 |
T |
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| Q |
118 |
gtacaatcttctctttttctcactcaaaattcatctatttatattagaagtatttcagcctttgcacgtaaagtgtttgataaaagttctgaaagaatgt |
217 |
Q |
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| T |
36664350 |
gtacaatcttctctttttctcactcaaaattcatctatttatattagaagtatttcagcctttgcacgtaaagtgtttgataaaagttctgaaagaatgt |
36664251 |
T |
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| Q |
218 |
ataaaacttagtaaagactcatcactgatcatactcttcataagt----------------tagggacattttagttaaattattaattttctcattttt |
301 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
36664250 |
ataaaacttagtgaagactcatcactgatcatactcttcataatttgacctgatcactgactagggacattttagttaaattattaattttctcattttt |
36664151 |
T |
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| Q |
302 |
gtctatatggtttctcccgtttcagtgtcaaccatcaaccaacttttctcggttttgtttctttcaaattttggaaattatctccttttatatattaagg |
401 |
Q |
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| T |
36664150 |
gtctatatggtttctcccgtttcagtgtcaaccatcaactaacttttctcggttttgtttctttcaaattttggaaattatctccttttatatattaagg |
36664051 |
T |
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| Q |
402 |
gtatatagattttgcacattatttcctcaagnnnnnnncaacacaagaggatcctaatttttatttcttatgaggcctttg |
482 |
Q |
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| T |
36664050 |
gtatatagattttgcacaatatttcctcaagtttttttcaacacaagaggatcctaatttgtatttcttatgaggcctttg |
36663970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 27 - 310
Target Start/End: Complemental strand, 7740 - 7470
Alignment:
| Q |
27 |
aaaaagggggctactttgcttagcggcggcggagatagagctatcattggcgacgctttcagctcaacaacatccatctctcacattcacggtacaatct |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7740 |
aaaaagggggctactttgcttagcggcggcggagatagaactatcattggcgacgctttcagctcaacaacatccatctctcacat-------------- |
7655 |
T |
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| Q |
127 |
tctctttttctcactcaaaattcatctatttatattagaagtatttcagcctttgcacgtaaagtgtttgataaaagttctgaaagaatgtataaaactt |
226 |
Q |
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| T |
7654 |
--------tctcgctcaaaatccatctatttatattagaagtatttcagcctttgcaagtaaagtgtttgataaaagttctgaaagaatgtataaaactt |
7563 |
T |
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| Q |
227 |
agtaaagactcatcactgatcatactcttcataa---------gttagggacattttagttaaattattaattttctcatttttgtctatatg |
310 |
Q |
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| T |
7562 |
agtcaagaatcatcactgactatactcttcataatttgacctgattagagacattttagttaaatcattaattttctcatttttgtctatatg |
7470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 307 - 482
Target Start/End: Complemental strand, 7440 - 7265
Alignment:
| Q |
307 |
tatggtttctcccgtttcagtgtcaaccatcaaccaacttttctcggttttgtttctttcaaattttggaaattatctccttttatatattaagggtata |
406 |
Q |
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| T |
7440 |
tatggtttcttcagtttcagtgtcaaccatcaaccaacttttctccgttttgtttctttcaaattttggaaattatctccttttatatattaagggtata |
7341 |
T |
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| Q |
407 |
tagattttgcacattatttcctcaagnnnnnnncaacacaagaggatcctaatttttatttcttatgaggcctttg |
482 |
Q |
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| T |
7340 |
tagattttgcacattattttctcaagtttttttcaacgcgagaggatcctaatccgtaattcttatgaggcctttg |
7265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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