View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5023_low_3 (Length: 441)
Name: NF5023_low_3
Description: NF5023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5023_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 44575373 - 44574947
Alignment:
| Q |
16 |
atccatcaaagaaatagaattattattggtttgtgttaattgcaagaagcaatgatagctcatgagggtgaggtttggggaacctttggaagagttgacc |
115 |
Q |
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| T |
44575373 |
atccatcaaagaaatagaattattattggtttgtgttaattgcaagaagcaatgatagctcatgagggtgaggtttggggaacctttggaagagttgacc |
44575274 |
T |
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| Q |
116 |
gaggaaagggagtgtggtgtcacggatcatgagtgatagtttgagacgattggtgattgagagaaactgttttgagatgatggagagggacttcaagtag |
215 |
Q |
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| T |
44575273 |
gaggaaagggagtgtggtgtcacggatcatgagtgatagtttgagacgattggtgattgagagaaactgttttgagacgatggagagagacttcaagtag |
44575174 |
T |
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| Q |
216 |
ctgttgtagtagttgtcgctgtagccgtaacagttcaaga----------------gcaacactcatcaggtaaatataaatctgttgctgcagccattg |
299 |
Q |
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| T |
44575173 |
ctgttgtagtagttgtcgctgtagccgtaacagttgaagaatttgaagatgtgttcccaacactcatcaggtaaatataaatctgttgctgcagccattg |
44575074 |
T |
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| Q |
300 |
aaagaatttctctacgtacgaggattggtgaatgataagagtgacggcgttggttgcaaaagggagtgactgagtagacttgcgggttaggttaggtcag |
399 |
Q |
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| T |
44575073 |
aaagaatttctctacgtacgacgattggtgaatgataagagtgacggcgttggttgcaaaagggagtgactgagtagacttgcgggttaggttaggtcag |
44574974 |
T |
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| Q |
400 |
aatcatgcgatgtcctatcaacataat |
426 |
Q |
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| T |
44574973 |
aatcatgcgatgtcctatcaacgtaat |
44574947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 44246591 - 44246646
Alignment:
| Q |
158 |
gagacgattggtgattgagagaaactgttttgagatgatggagagggacttcaagt |
213 |
Q |
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| T |
44246591 |
gagacgatcagtgattgagagaaactgttttgagacgatagagagggacgtcaagt |
44246646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 17626905 - 17626863
Alignment:
| Q |
257 |
caacactcatcaggtaaatataaatctgttgctgcagccattg |
299 |
Q |
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| T |
17626905 |
caacactcattaggtaaatataaatctgctgctgcaaccattg |
17626863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 6587947 - 6587906
Alignment:
| Q |
257 |
caacactcatcaggtaaatataaatctgttgctgcagccatt |
298 |
Q |
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| T |
6587947 |
caacaatcataaggtaaatataaatatgttgctgcagccatt |
6587906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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