View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5024-Insertion-1 (Length: 1179)

Name: NF5024-Insertion-1
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5024-Insertion-1
NF5024-Insertion-1
[»] chr6 (15 HSPs)
chr6 (684-852)||(5441413-5441580)
chr6 (719-861)||(5450609-5450751)
chr6 (684-852)||(5376534-5376698)
chr6 (719-861)||(5452223-5452364)
chr6 (436-589)||(5441180-5441335)
chr6 (859-1097)||(21542311-21542565)
chr6 (893-1102)||(3095728-3095954)
chr6 (419-514)||(5376142-5376236)
chr6 (728-852)||(5428318-5428441)
chr6 (894-1097)||(11082259-11082477)
chr6 (450-666)||(5428048-5428270)
chr6 (893-946)||(35129234-35129288)
chr6 (859-946)||(34177820-34177909)
chr6 (419-464)||(5335716-5335761)
chr6 (1038-1097)||(35129068-35129131)
[»] chr7 (19 HSPs)
chr7 (860-1097)||(14805764-14806016)
chr7 (860-1097)||(15252758-15253010)
chr7 (860-1097)||(18102423-18102677)
chr7 (860-943)||(47557928-47558012)
chr7 (860-946)||(19912947-19913034)
chr7 (858-946)||(45485845-45485935)
chr7 (860-1097)||(25737640-25737895)
chr7 (860-946)||(16562642-16562730)
chr7 (860-946)||(16602932-16603020)
chr7 (895-941)||(25944475-25944522)
chr7 (893-927)||(4910862-4910896)
chr7 (893-946)||(12633165-12633219)
chr7 (1026-1097)||(46760270-46760345)
chr7 (1033-1097)||(4910648-4910714)
chr7 (895-925)||(18800933-18800963)
chr7 (895-925)||(30082278-30082308)
chr7 (895-925)||(47778671-47778701)
chr7 (1026-1097)||(12632357-12632432)
chr7 (852-885)||(20123952-20123985)
[»] chr3 (14 HSPs)
chr3 (860-946)||(11054446-11054533)
chr3 (857-941)||(14752382-14752468)
chr3 (860-943)||(36546440-36546525)
chr3 (860-943)||(36561790-36561875)
chr3 (856-943)||(23311734-23311822)
chr3 (1026-1097)||(30189647-30189722)
chr3 (860-944)||(30189468-30189553)
chr3 (893-943)||(23910636-23910687)
chr3 (895-925)||(6437982-6438012)
chr3 (957-998)||(47866994-47867036)
chr3 (895-939)||(7866659-7866704)
chr3 (895-939)||(22479211-22479256)
chr3 (1026-1097)||(23311566-23311641)
chr3 (895-939)||(37074861-37074906)
[»] chr2 (16 HSPs)
chr2 (859-1097)||(6110212-6110468)
chr2 (865-943)||(41528156-41528235)
chr2 (893-946)||(28599327-28599381)
chr2 (858-1097)||(45085151-45085404)
chr2 (860-943)||(3201229-3201314)
chr2 (860-943)||(35517016-35517101)
chr2 (895-941)||(19263998-19264045)
chr2 (1026-1097)||(11617096-11617171)
chr2 (893-925)||(18834123-18834155)
chr2 (895-925)||(14873859-14873889)
chr2 (895-925)||(25571943-25571973)
chr2 (895-925)||(33198866-33198896)
chr2 (857-939)||(38070876-38070959)
chr2 (895-925)||(45660261-45660291)
chr2 (896-925)||(5280712-5280741)
chr2 (896-925)||(40808944-40808973)
[»] chr1 (23 HSPs)
chr1 (859-1098)||(12448980-12449235)
chr1 (857-1097)||(32624019-32624276)
chr1 (859-946)||(24190364-24190452)
chr1 (893-946)||(39555765-39555819)
chr1 (859-943)||(43667482-43667568)
chr1 (859-941)||(15959855-15959939)
chr1 (895-939)||(6786736-6786781)
chr1 (859-939)||(6787208-6787290)
chr1 (895-939)||(7468170-7468215)
chr1 (957-1097)||(15959654-15959805)
chr1 (856-925)||(16853994-16854064)
chr1 (895-939)||(28016961-28017006)
chr1 (896-937)||(43765204-43765245)
chr1 (895-938)||(44149050-44149094)
chr1 (893-943)||(2125965-2126016)
chr1 (1026-1097)||(3875033-3875106)
chr1 (895-925)||(4672798-4672828)
chr1 (895-925)||(46542880-46542910)
chr1 (1026-1097)||(2126110-2126185)
chr1 (1038-1097)||(11241111-11241174)
chr1 (1026-1097)||(28016760-28016835)
chr1 (895-939)||(33369452-33369497)
chr1 (896-925)||(44056514-44056543)
[»] chr4 (22 HSPs)
chr4 (859-1097)||(2229137-2229392)
chr4 (860-946)||(14332651-14332739)
chr4 (857-1097)||(47867768-47868024)
chr4 (894-1097)||(41414618-41414834)
chr4 (893-943)||(28669175-28669226)
chr4 (893-946)||(7654553-7654607)
chr4 (857-938)||(16605046-16605129)
chr4 (1026-1097)||(4058785-4058860)
chr4 (1026-1097)||(16604853-16604928)
chr4 (895-939)||(17186992-17187037)
chr4 (1026-1097)||(20281661-20281736)
chr4 (893-925)||(30012131-30012163)
chr4 (895-938)||(35529568-35529612)
chr4 (895-938)||(48793837-48793881)
chr4 (893-946)||(20281519-20281571)
chr4 (896-938)||(42915427-42915470)
chr4 (895-937)||(55580564-55580607)
chr4 (870-925)||(26916228-26916283)
chr4 (893-946)||(56318243-56318296)
chr4 (1026-1097)||(26916395-26916470)
chr4 (895-939)||(39078054-39078099)
chr4 (1026-1097)||(55580740-55580815)
[»] chr8 (23 HSPs)
chr8 (859-943)||(41086569-41086655)
chr8 (893-1097)||(7858454-7858673)
chr8 (893-943)||(7022586-7022637)
chr8 (859-941)||(34890390-34890474)
chr8 (957-1097)||(34890189-34890340)
chr8 (957-1097)||(36190766-36190917)
chr8 (897-939)||(28348511-28348553)
chr8 (957-1097)||(28348605-28348755)
chr8 (893-946)||(20051504-20051557)
chr8 (1026-1097)||(35525657-35525730)
chr8 (1026-1097)||(43216362-43216437)
chr8 (895-938)||(4047113-4047157)
chr8 (1026-1097)||(13143960-13144036)
chr8 (858-925)||(15958117-15958185)
chr8 (895-925)||(8107852-8107882)
chr8 (895-925)||(13143661-13143691)
chr8 (895-925)||(36190668-36190698)
chr8 (895-925)||(43216588-43216618)
chr8 (895-939)||(13144179-13144224)
chr8 (895-939)||(24892735-24892780)
chr8 (894-943)||(26483460-26483509)
chr8 (896-925)||(30576060-30576089)
chr8 (895-939)||(35525495-35525540)
[»] chr5 (17 HSPs)
chr5 (857-946)||(11262063-11262154)
chr5 (859-946)||(37522769-37522858)
chr5 (859-946)||(37562941-37563030)
chr5 (893-1097)||(6686311-6686532)
chr5 (859-1097)||(43589976-43590231)
chr5 (893-946)||(842745-842799)
chr5 (895-941)||(9957631-9957678)
chr5 (860-941)||(20643877-20643960)
chr5 (893-938)||(25840760-25840806)
chr5 (895-939)||(8225362-8225407)
chr5 (895-939)||(42273548-42273593)
chr5 (895-938)||(39505450-39505494)
chr5 (895-939)||(12730204-12730249)
chr5 (1038-1097)||(20039186-20039249)
chr5 (1026-1097)||(20644086-20644161)
chr5 (895-939)||(34425229-34425274)
chr5 (1026-1097)||(42273719-42273794)
[»] scaffold0045 (1 HSPs)
scaffold0045 (893-943)||(77885-77936)
[»] scaffold0300 (1 HSPs)
scaffold0300 (860-1097)||(587-840)
[»] scaffold0132 (2 HSPs)
scaffold0132 (895-939)||(911-956)
scaffold0132 (895-939)||(8871-8916)
[»] scaffold0009 (1 HSPs)
scaffold0009 (896-938)||(157694-157737)
[»] scaffold0774 (1 HSPs)
scaffold0774 (899-944)||(3609-3655)
[»] scaffold1157 (1 HSPs)
scaffold1157 (895-936)||(2060-2101)


Alignment Details
Target: chr6 (Bit Score: 84; Significance: 3e-39; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 684 - 852
Target Start/End: Original strand, 5441413 - 5441580
Alignment:
Q  684 tatgcaagagttaatcaaatatgtatgacaaaccgacataagagatatttcttcaaactagagaaacatgtgctgaagaatatattaatccaattaacnn 783  Q
    ||||||| | ||||||||| |||||||| |||   |||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |      
T  5441413 tatgcaacaattaatcaaacatgtatgagaaaaa-acataagagatatttcttcaaactagagaagcatgtgcagaagcatatattaatccaattagcaa 5441511  T
Q  784 nnnnngttgaattatgttctcacaaacttttccatctctcatggaattattcacatcaacaaaaattca 852  Q
         |||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |||||||||    
T  5441512 aaagagttgaattatgttctcacaatcttttccatctcacatggaattattctcatcaataaaaattca 5441580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 719 - 861
Target Start/End: Original strand, 5450609 - 5450751
Alignment:
Q  719 acataagagatatttcttcaaactagagaaacatgtgctgaagaatatattaatccaattaacnnnnnnngttgaattatgttctcacaaacttttccat 818  Q
    |||||||||||||| ||| ||| |||| | ||||||||||||| |||||| ||||||||||||       | ||||| |||||||||||| |||||||||    
T  5450609 acataagagatattccttaaaattagacatacatgtgctgaagcatatataaatccaattaacttaaagagctgaataatgttctcacaatcttttccat 5450708  T
Q  819 ctctcatggaattattcacatcaacaaaaattcaaagaaaata 861  Q
    |||  ||||||||||||||||||||||||||||| ||| ||||    
T  5450709 ctcaaatggaattattcacatcaacaaaaattcacagataata 5450751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 684 - 852
Target Start/End: Original strand, 5376534 - 5376698
Alignment:
Q  684 tatgcaagagttaatcaaatatgtatgacaaaccgacataagagatatttcttcaaactagagaaacatgtgctgaagaatatattaatccaattaacnn 783  Q
    ||||||| | ||| |||||||||||||| ||||  ||||||||||||||  ||||||| | ||||||||||| || || ||||| |||||||||||||      
T  5376534 tatgcaaaaattattcaaatatgtatgaaaaacaaacataagagatattcattcaaaccatagaaacatgtgttgtagcatatactaatccaattaacaa 5376633  T
Q  784 nnnnngttgaattatgttctcacaaacttttccatctctcatggaattattcacatcaacaaaaattca 852  Q
         ||| |||||    ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  5376634 aaagagtttaatta----ctcacaatcttttccatctcacatggaattattcacatcaacaaaaattca 5376698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 719 - 861
Target Start/End: Original strand, 5452223 - 5452364
Alignment:
Q  719 acataagagatatttcttcaaactagagaaacatgtgctgaagaatatattaatccaattaacnnnnnnngttgaattatgttctcacaaacttttccat 818  Q
    |||||||||||||| ||| ||| |||| ||  ||||||||||| |||||| ||||||||||||       | ||||| |||||||||||| |||||||||    
T  5452223 acataagagatattccttaaaattagacaat-atgtgctgaagcatatataaatccaattaacttaaagagctgaataatgttctcacaatcttttccat 5452321  T
Q  819 ctctcatggaattattcacatcaacaaaaattcaaagaaaata 861  Q
    |||  ||||||||||||||||||||||||||||| ||| ||||    
T  5452322 ctcaaatggaattattcacatcaacaaaaattcacagataata 5452364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 436 - 589
Target Start/End: Original strand, 5441180 - 5441335
Alignment:
Q  436 aaacattattatgatttatgagatcaaatcataacaaaggctggaagtttaaagtcagtctaaaatttataacttgag--agttgag-acagtaaaataa 532  Q
    ||||||||||| |||||| || ||||||||| |||| |||||||||||| ||| | ||||||||||||||| ||||||  ||   || ||| |||||| |    
T  5441180 aaacattattaagatttaagatatcaaatcaaaacagaggctggaagttgaaa-ttagtctaaaatttatatcttgagacagcaaagtacaataaaatta 5441278  T
Q  533 aataaaaatctgtatgaactatgatactacttcatatgctgatctgaattctagttg 589  Q
    ||||||||  |||||||||||||| || |||||| || |||||||||||| ||||||    
T  5441279 aataaaaacatgtatgaactatgaaaccacttcagatactgatctgaattttagttg 5441335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 859 - 1097
Target Start/End: Original strand, 21542311 - 21542565
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatcttttcc---agannnnn 953  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||| |||||||||| ||||||||||||||   |           
T  21542311 atactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttttccaatattttttt 21542410  T
Q  954 nngttattctcataa-aataaatgc-aattacattcaattttctctcctcttca-tttttccata--ccatggcc-ataaaaa-tgttttaacatcttcc 1046  Q
      ||||||||||||| | ||||||| |||||||||||||||||| |    |||| ||||||||||  | || ||| ||||||| |||||| |||||||||    
T  21542411 ttgttattctcataatattaaatgcaaattacattcaattttctttttctttcattttttccataaccaatagccaataaaaattgtttttacatcttcc 21542510  T
Q  1047 tataaaacctttt-cagagaaaac---caaaactatactccaaattcttatgttt 1097  Q
    |||||||| |||| || |||||||    |||||||||||||||||||||||||||    
T  21542511 tataaaactttttccaaagaaaacacaaaaaactatactccaaattcttatgttt 21542565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 893 - 1102
Target Start/End: Complemental strand, 3095954 - 3095728
Alignment:
Q  893 cacattttctttgtcccaaaatataagca-aaaagacaagcttttatcttttcc-aga----nnnnnnngttattctcataaaa-taaatgc-aattaca 984  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||           ||||||||||||||| ||||||| |||||||    
T  3095954 cacattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttttccaagatttttttttttgttattctcataaaattaaatgcaaattaca 3095855  T
Q  985 ttcaattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatcttcctataaaaccttttcagagaaaac---caaaact 1076  Q
    |||||||||||||    |||| ||||||||||  | || ||||   |||| |||||| ||||||||||||||||| ||| || |||||||    ||||||    
T  3095854 ttcaattttctctttatttcattttttccataatcaatagccaatgaaaattgtttttacatcttcctataaaacttttccaaagaaaacacaaaaaact 3095755  T
Q  1077 atactccaaattcttatg-tttagttt 1102  Q
    |||||||||||| ||||| ||||||||    
T  3095754 atactccaaatttttatgctttagttt 3095728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 419 - 514
Target Start/End: Original strand, 5376142 - 5376236
Alignment:
Q  419 ttattaattgctgatcaaaacattattatgatttatgagatcaaatcataacaaaggctggaagtttaaagtcagtctaaaatttataacttgaga 514  Q
    |||||||| |||||  |||||||||||| |||||| |||||||||||| |||| ||| |||||| || ||||||||||| |||||||| |||||||    
T  5376142 ttattaatcgctgaggaaaacattattaagatttaagagatcaaatcaaaacagaggttggaag-ttgaagtcagtctacaatttatatcttgaga 5376236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 728 - 852
Target Start/End: Original strand, 5428318 - 5428441
Alignment:
Q  728 atatttcttcaaactagagaaacatgtgctgaagaatatattaatccaattaacnnnnnnngttgaattatgttctcacaaacttttccatctctcatgg 827  Q
    ||||| |||||||||| ||||||||||| ||||  ||||||||||| ||| ||        ||||||| | ||||||| || |||||||||||| |||||    
T  5428318 atattccttcaaactaaagaaacatgtgttgaaacatatattaatcaaatcaattttaatagttgaataa-gttctcataatcttttccatctcacatgg 5428416  T
Q  828 aattattcacatcaacaaaaattca 852  Q
    ||||||||||| |||||||||||||    
T  5428417 aattattcacagcaacaaaaattca 5428441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 894 - 1097
Target Start/End: Complemental strand, 11082477 - 11082259
Alignment:
Q  894 acattttctttgtcccaaaatataagcaaaaagacaagcttttatc-ttttccaga---nnnnnnngttattctcataaaa-taaatgc-aattacattc 987  Q
    ||||||||||||| |||||||||||||||||| |||| |||||||| ||||| |||          ||||||||||||||| ||||||| ||||||||||    
T  11082477 acattttctttgtaccaaaatataagcaaaaacacaaacttttatctttttcaagattttttttttgttattctcataaaattaaatgcaaattacattc 11082378  T
Q  988 aattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatcttcctataaaacctttt-cagagaaaac---caaaactat 1078  Q
    ||||||||||    |||| ||||||||||  | || ||||   |||| |||||| |||||| |||||||||| |||| || |||||||    ||||||||    
T  11082377 aattttctctttctttcattttttccataaccaatagccaatgaaaattgtttttacatctccctataaaactttttccaaagaaaacacaaaaaactat 11082278  T
Q  1079 actccaaattcttatgttt 1097  Q
    |||||||||||||||||||    
T  11082277 actccaaattcttatgttt 11082259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 450 - 666
Target Start/End: Original strand, 5428048 - 5428270
Alignment:
Q  450 tttatgagatcaaatcataacaaaggctggaagtttaaagtcagtctaaaatttataacttgagagt-tgagacagtaaaataa--aataaaaatctgta 546  Q
    |||| |||||||||||| |||| || ||||||||| || |||||||||||||||||| |||||||   | | | || | || ||  ||||||||  ||||    
T  5428048 tttaagagatcaaatcaaaacagagtctggaagttgaa-gtcagtctaaaatttatatcttgagacagtaaaatagaacaaaaataaataaaaacatgta 5428146  T
Q  547 tgaactatgatactacttcatatgctgatctgaattctagttgctcaacaaaaa-cccat---ttcttctcaaattttctagaactaaattaatcagaat 642  Q
    || ||||||| || |||| |||| ||||||||||||||||||  | || ||||| |||||   ||||||||||  |||| ||||||| || ||||||||     
T  5428147 tgtactatgaaaccactttatattctgatctgaattctagttcttaaaaaaaaatcccatttcttcttctcaatatttccagaactagatcaatcagaaa 5428246  T
Q  643 ttccatatggatacatatacttta 666  Q
    ||||| ||| ||||||||| ||||    
T  5428247 ttccagatgaatacatataattta 5428270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 893 - 946
Target Start/End: Complemental strand, 35129288 - 35129234
Alignment:
Q  893 cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatcttttcca 946  Q
    ||||||||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  35129288 cacattttctttgtcccaaaatacaagcaaaaaagacaaacttttatcttttcca 35129234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 859 - 946
Target Start/End: Complemental strand, 34177909 - 34177820
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataag-caaaaagacaagcttttatcttttcca 946  Q
    ||||||||||||||||||||||||||         |||||||||||||| ||||||||||||  ||||| |||| |||||||||||||||    
T  34177909 atactccctccgtcccataatataagtaaaaaaaacacattttctttgtaccaaaatataagtaaaaaacacaaacttttatcttttcca 34177820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 5335716 - 5335761
Alignment:
Q  419 ttattaattgctgatcaaaacattattatgatttatgagatcaaat 464  Q
    |||||||||||||| ||||||||||||| ||||||  |||||||||    
T  5335716 ttattaattgctgagcaaaacattattaagatttaaaagatcaaat 5335761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1038 - 1097
Target Start/End: Complemental strand, 35129131 - 35129068
Alignment:
Q  1038 acatcttcctataaaaccttttc-agagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    ||||||||||||||||| ||||| | |||||||    |||||||||||||||||||||||||||    
T  35129131 acatcttcctataaaactttttccaaagaaaacacaaaaaactatactccaaattcttatgttt 35129068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 5e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 860 - 1097
Target Start/End: Original strand, 14805764 - 14806016
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagcaaaa-agacaagcttttatcttttcc-aga--nnnnnn 954  Q
    ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||            
T  14805764 tactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagcaaaacagacaaacttttatcttttccaagatttttttt 14805863  T
Q  955 ngttattctcataaaa-taaatgc-aattacattcaattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatcttcct 1047  Q
     ||||||||||||||| ||||||| ||||||||||||||||||||    |||| ||||||||||  | || ||||   |||| |||||| ||||||||||    
T  14805864 tgttattctcataaaattaaatgcaaattacattcaattttctctttctttcattttttccataaccaatagccaatgaaaattgtttttacatcttcct 14805963  T
Q  1048 ataaaaccttttcagagaaaa---ccaaaactatactccaaattcttatgttt 1097  Q
    ||||||| |||||| ||||||     |||||||||||||||||||||||||||    
T  14805964 ataaaactttttcaaagaaaatacaaaaaactatactccaaattcttatgttt 14806016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 860 - 1097
Target Start/End: Original strand, 15252758 - 15253010
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagcaaaa-agacaagcttttatcttttcc-aga--nnnnnn 954  Q
    ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||            
T  15252758 tactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagcaaaacagacaaacttttatcttttccaagatttttttt 15252857  T
Q  955 ngttattctcataaaa-taaatgc-aattacattcaattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatcttcct 1047  Q
     ||||||||||||||| ||||||| ||||||||||||||||||||    |||| ||||||||||  | || ||||   |||| |||||| ||||||||||    
T  15252858 tgttattctcataaaattaaatgcaaattacattcaattttctctttctttcattttttccataaccaatagccaatgaaaattgtttttacatcttcct 15252957  T
Q  1048 ataaaaccttttcagagaaaa---ccaaaactatactccaaattcttatgttt 1097  Q
    ||||||| |||||| ||||||     |||||||||||||||||||||||||||    
T  15252958 ataaaactttttcaaagaaaatacaaaaaactatactccaaattcttatgttt 15253010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 860 - 1097
Target Start/End: Original strand, 18102423 - 18102677
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatc-ttttccaga---nnnnn 953  Q
    ||||||||||||||||||||||||||        |||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |||            
T  18102423 tactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttatctttttcaagatttttttt 18102522  T
Q  954 nngttattctcataaaa-taaatgc-aattacattcaattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatcttcc 1046  Q
       |||||||||||||| ||||||| ||||||||||||||||| |||   |||| ||||||||||  | |||||||   |||| |||||| |||||||||    
T  18102523 tgtttattctcataaaattaaatgcaaattacattcaattttcactctctttcattttttccataaccaatggccaatgaaaattgtttttacatcttcc 18102622  T
Q  1047 tataaaac-cttttcagagaaaac---caaaactatactccaaattcttatgttt 1097  Q
    ||||||||  |||||| |||||||    |||| ||||||||||||||||||||||    
T  18102623 tataaaacttttttcaaagaaaacacaaaaaattatactccaaattcttatgttt 18102677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 860 - 943
Target Start/End: Complemental strand, 47558012 - 47557928
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnncacattttctttgtcccaaaatataagca-aaaagacaagcttttatctttt 943  Q
    |||||||||||||||||||||||||        ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  47558012 tactccctccgtcccataatataagaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttatgtttt 47557928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 860 - 946
Target Start/End: Complemental strand, 19913034 - 19912947
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnncacattttctttgtcccaaaatat-aagcaaaaagacaagcttttatcttttcca 946  Q
    ||||||||||||||||||||||||||       |||||||||||| ||||||||||| ||  |||||||||| |||||||||||||||    
T  19913034 tactccctccgtcccataatataagcaaaataacacattttctttatcccaaaatataaataaaaaagacaaacttttatcttttcca 19912947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 858 - 946
Target Start/End: Original strand, 45485845 - 45485935
Alignment:
Q  858 aatactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatcttttcca 946  Q
    ||||||||||||||||||||||||||||        |||||||||||||||| ||||||||||| ||||||||||  ||||||||||||||    
T  45485845 aatactccctccgtcccataatataagcaaaaataacacattttctttgtccaaaaatataagcaaaaaagacaaaattttatcttttcca 45485935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 860 - 1097
Target Start/End: Complemental strand, 25737895 - 25737640
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn---cacattttctttgtcccaaaatataagca-aaaagacaagcttttatcttttcc-aga--nnnn 952  Q
    ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||| |||| | || |||||||||||||| |||          
T  25737895 tactccctccgtcccataatataagcaaaaaaaaaacacattttctttgtcccaaaatataagcaaaaaaaaaaaacttttatcttttccaagatttttt 25737796  T
Q  953 nnngttattctcataaaa-taaatgc-aattacattcaattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatcttc 1045  Q
       ||||||||||||||| ||||||| ||||||||||||||||||||    |||| ||||||||||  | || ||||   |||| |||||| ||||||||    
T  25737795 tttgttattctcataaaattaaatgcaaattacattcaattttctctttctttcattttttccataaccaatagccaatgaaaattgtttttacatcttc 25737696  T
Q  1046 ctataaaacctttt-cagagaaaac---caaaactatactccaaattcttatgttt 1097  Q
    ||||||||| |||| || |||||||   ||||||||||| ||||||| ||||||||    
T  25737695 ctataaaactttttccaaagaaaacacacaaaactataccccaaatttttatgttt 25737640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 860 - 946
Target Start/End: Original strand, 16562642 - 16562730
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataag-caaaaagacaagcttttatcttttcca 946  Q
    ||||||||||||||||||||||||||        |||||||||||||||||||||||||||  ||||||||||  ||||||||||||||    
T  16562642 tactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagtaaaaaagacaaatttttatcttttcca 16562730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 860 - 946
Target Start/End: Complemental strand, 16603020 - 16602932
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataag-caaaaagacaagcttttatcttttcca 946  Q
    ||||||||||||||||||||||||||        |||||||||||||||||||||||||||  ||||||||||  ||||||||||||||    
T  16603020 tactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagtaaaaaagacaaatttttatcttttcca 16602932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 895 - 941
Target Start/End: Original strand, 25944475 - 25944522
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttatctt 941  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||    
T  25944475 cattttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 25944522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 893 - 927
Target Start/End: Complemental strand, 4910896 - 4910862
Alignment:
Q  893 cacattttctttgtcccaaaatataagcaaaaaga 927  Q
    |||||||||||||||||||||||||||||||||||    
T  4910896 cacattttctttgtcccaaaatataagcaaaaaga 4910862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 893 - 946
Target Start/End: Complemental strand, 12633219 - 12633165
Alignment:
Q  893 cacattttctttgtcccaaaatataagcaaaa-agacaagcttttatcttttcca 946  Q
    |||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||    
T  12633219 cacattttttttgtcccaaaatataatcaaaatagacaaacttttatcttttcca 12633165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Complemental strand, 46760345 - 46760270
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaacctttt-cagagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| ||||||||||||||||| |||| || |||||||    |||||||||||||||||||||||||||    
T  46760345 aaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactccaaattcttatgttt 46760270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1033 - 1097
Target Start/End: Complemental strand, 4910714 - 4910648
Alignment:
Q  1033 ttttaacatcttcctataaaaccttttc-agagaaaac-caaaactatactccaaattcttatgttt 1097  Q
    |||| ||||||||||||||||| ||||| | ||||||| ||||| |||||| |||||||||||||||    
T  4910714 tttttacatcttcctataaaactttttctaaagaaaacacaaaaatatacttcaaattcttatgttt 4910648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Complemental strand, 18800963 - 18800933
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  18800963 cattttctttgtcccaaaatataagcaaaaa 18800933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Original strand, 30082278 - 30082308
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  30082278 cattttctttgtcccaaaatataagcaaaaa 30082308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Original strand, 47778671 - 47778701
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  47778671 cattttctttgtcccaaaatataagcaaaaa 47778701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Complemental strand, 12632432 - 12632357
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaacctttt-cagagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| |||||||||||| |||| |||| || |||||||    |||||||||||||||||||||||||||    
T  12632432 aaaattgtttttacatcttcctatgaaacttttttcaaagaaaacataaaaaactatactccaaattcttatgttt 12632357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 852 - 885
Target Start/End: Complemental strand, 20123985 - 20123952
Alignment:
Q  852 aaagaaaatactccctccgtcccataatataagc 885  Q
    |||||| |||||||||||||||||||||||||||    
T  20123985 aaagaatatactccctccgtcccataatataagc 20123952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 5e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 860 - 946
Target Start/End: Complemental strand, 11054533 - 11054446
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnncacattttctttgtcccaaaatataagca-aaaagacaagcttttatcttttcca 946  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  11054533 tactccctccgtcccataatataagccaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttttcca 11054446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 857 - 941
Target Start/End: Complemental strand, 14752468 - 14752382
Alignment:
Q  857 aaatactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttatctt 941  Q
    |||||||||||||||||||||||||||||        | ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  14752468 aaatactccctccgtcccataatataagcaaaaaaaactcattttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 14752382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 860 - 943
Target Start/End: Original strand, 36546440 - 36546525
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatctttt 943  Q
    ||||||||||||||||||||||||||        |||||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  36546440 tactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttgtctttt 36546525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 860 - 943
Target Start/End: Complemental strand, 36561875 - 36561790
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttatctttt 943  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  36561875 tactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttgtctttt 36561790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 856 - 943
Target Start/End: Complemental strand, 23311822 - 23311734
Alignment:
Q  856 aaaatactccctccgtcccataatataagcnnnnnnncacattttctttgtcccaaaatataagca-aaaagacaagcttttatctttt 943  Q
    |||||||||||||||||||| | ||||||        ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  23311822 aaaatactccctccgtcccaaattataaggaaaaaaacacattttctttgtcccaaaatataagcaaaaaagtcaaacttttatctttt 23311734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Original strand, 30189647 - 30189722
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaacctttt-cagagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| ||||||||||||||||| |||| || |||||||    |||||||||||||||||||||||||||    
T  30189647 aaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactccaaattcttatgttt 30189722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 860 - 944
Target Start/End: Original strand, 30189468 - 30189553
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnncacattttctttgtcccaaaata-taagcaaaaagacaagcttttatcttttc 944  Q
    |||||||||| |||||||||||||||       ||||||||||||||||||||||| |||  ||||||| ||  ||||||||||||    
T  30189468 tactccctccatcccataatataagcaaaaaaacacattttctttgtcccaaaatattaataaaaaagataaatttttatcttttc 30189553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 893 - 943
Target Start/End: Complemental strand, 23910687 - 23910636
Alignment:
Q  893 cacattttctttgtcccaaaatataagca-aaaagacaagcttttatctttt 943  Q
    |||||||| |||||||||||||||||||| |||||||||  |||||||||||    
T  23910687 cacattttttttgtcccaaaatataagcaaaaaagacaaatttttatctttt 23910636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Original strand, 6437982 - 6438012
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  6437982 cattttctttgtcccaaaatataagcaaaaa 6438012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 957 - 998
Target Start/End: Complemental strand, 47867036 - 47866994
Alignment:
Q  957 ttattctcataaaataaatgcaa-ttacattcaattttctctc 998  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  47867036 ttattctcataaattaaatgcaaattacattcaattttctctc 47866994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 939
Target Start/End: Complemental strand, 7866704 - 7866659
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttatc 939  Q
    |||||||||||||||||||||||| | |||||||||| ||||||||    
T  7866704 cattttctttgtcccaaaatataaacaaaaaagacaaacttttatc 7866659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 939
Target Start/End: Complemental strand, 22479256 - 22479211
Alignment:
Q  895 cattttctttgtcccaaaatataagca-aaaagacaagcttttatc 939  Q
    |||||||||||||||||| |||||||| ||||||||| ||||||||    
T  22479256 cattttctttgtcccaaattataagcaaaaaagacaaacttttatc 22479211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Complemental strand, 23311641 - 23311566
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaac-cttttcagagaaaac---caaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| |||||||||||||||||  |||||| |||||||   ||||||||||||| ||||| ||||||||    
T  23311641 aaaattgtttttacatcttcctataaaacttttttcaaagaaaacacacaaaactatactctaaatttttatgttt 23311566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 37074861 - 37074906
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttatc 939  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||    
T  37074861 cattttctttgtcccgaaatataagcaaaaaagacaaacttttatc 37074906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 5e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 859 - 1097
Target Start/End: Complemental strand, 6110468 - 6110212
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttatcttttcc-aga--nnnnn 953  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||           
T  6110468 atactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttttccaagattttttt 6110369  T
Q  954 nngttattctcataaaa-taaatgc-aattacattcaattttctctc-ctc-ttca-tttttccata--ccatggcca--taaaaatgttttaacatctt 1044  Q
       |||||||||||||| ||||||| ||||||||||||||||||||| ||| |||| ||||||||||  | || ||||   |||| |||||| |||||||    
T  6110368 tgtttattctcataaaattaaatgcaaattacattcaattttctctctctctttcattttttccataaccaatagccaatgaaaattgtttttacatctt 6110269  T
Q  1045 cctataaaaccttttcag-agaaaac-caaaa--ctatactccaaattcttatgttt 1097  Q
    |||||||||| ||||| | ||||||| |||||  |||||||||||||||||||||||    
T  6110268 cctataaaactttttccgaagaaaacacaaaaagctatactccaaattcttatgttt 6110212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 865 - 943
Target Start/End: Original strand, 41528156 - 41528235
Alignment:
Q  865 cctccgtcccataatataagcnnnnnnncacattttctttgtcccaaaatataagc-aaaaagacaagcttttatctttt 943  Q
    |||||||||||||||||||||       |||||||| ||||||||||||||||||| |||||||||| ||||||||||||    
T  41528156 cctccgtcccataatataagcaaaaaaacacattttgtttgtcccaaaatataagcaaaaaagacaaacttttatctttt 41528235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 893 - 946
Target Start/End: Complemental strand, 28599381 - 28599327
Alignment:
Q  893 cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatcttttcca 946  Q
    |||||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  28599381 cacattttctttgtcccaaaatataatcaaaaaagacaaacttttatcttttcca 28599327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 858 - 1097
Target Start/End: Original strand, 45085151 - 45085404
Alignment:
Q  858 aatactccctccgtcccataatataagcnnnnnnncacattttctttgtcccaaaatataagc-aaaaagacaagcttttatcttttc-caga--nnnnn 953  Q
    |||||||||||||||||||||||||||         | ||||||||||||||||||||||||| ||||||| || |||||||||||||  |||           
T  45085151 aatactccctccgtcccataatataagaaaaaaaa-atattttctttgtcccaaaatataagcaaaaaagataaacttttatcttttctaagattttttt 45085249  T
Q  954 nngttattctcataaaa-taaatgc-aattacattcaattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatcttcc 1046  Q
       |||||||||||||| ||||||| |||||||||||||||||||||   |||| ||||||||||  | ||||| |   |||| |||||| |||||||||    
T  45085250 tgtttattctcataaaattaaatgcaaattacattcaattttctctctctttcattttttccataaccaatggctaatgaaaattgtttttacatcttcc 45085349  T
Q  1047 tataaaac-cttttcagagaaaa---ccaaaactatactccaaattcttatgttt 1097  Q
    ||||||||  |||||| ||||||     |||||||||||||||||||||||||||    
T  45085350 tataaaacttttttcaaagaaaatacaaaaaactatactccaaattcttatgttt 45085404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 860 - 943
Target Start/End: Original strand, 3201229 - 3201314
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatctttt 943  Q
    ||||||||||||||||||||||||||        |||||||||||| ||||||||||||||| |||||||||| || |||||||||    
T  3201229 tactccctccgtcccataatataagcaaaaaaaacacattttctttatcccaaaatataagcaaaaaagacaaactattatctttt 3201314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 860 - 943
Target Start/End: Original strand, 35517016 - 35517101
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatctttt 943  Q
    ||||||||||||||||||||||||||        ||||||||||| || ||||||||||||| |||||||||| ||||||||||||    
T  35517016 tactccctccgtcccataatataagcaaaaaaaacacattttcttcgtaccaaaatataagcaaaaaagacaaacttttatctttt 35517101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 895 - 941
Target Start/End: Original strand, 19263998 - 19264045
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttatctt 941  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||    
T  19263998 cattttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 19264045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Original strand, 11617096 - 11617171
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaacctttt-cagagaaaa---ccaaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| ||||||||||||||||| |||| || ||||||   | |||||||||||||||||||||||||||    
T  11617096 aaaattgtttttacatcttcctataaaacttttttcaaagaaaataccaaaaactatactccaaattcttatgttt 11617171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 893 - 925
Target Start/End: Complemental strand, 18834155 - 18834123
Alignment:
Q  893 cacattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||||    
T  18834155 cacattttctttgtcccaaaatataagcaaaaa 18834123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Original strand, 14873859 - 14873889
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  14873859 cattttctttgtcccaaaatataagcaaaaa 14873889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Original strand, 25571943 - 25571973
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  25571943 cattttctttgtcccaaaatataagcaaaaa 25571973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Complemental strand, 33198896 - 33198866
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  33198896 cattttctttgtcccaaaatataagcaaaaa 33198866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 857 - 939
Target Start/End: Original strand, 38070876 - 38070959
Alignment:
Q  857 aaatactccctccgtcccataatataagcnnnnnnncacattttctttgtcccaaaatataagc-aaaaagacaagcttttatc 939  Q
    ||||||||||||||||||| | ||||||        | |||||||||||||||||| ||||||| |||||||||| ||||||||    
T  38070876 aaatactccctccgtcccaaattataaggaaaaaaactcattttctttgtcccaaattataagcaaaaaagacaaacttttatc 38070959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Original strand, 45660261 - 45660291
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  45660261 cattttctttgtcccaaaatataagcaaaaa 45660291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 896 - 925
Target Start/End: Complemental strand, 5280741 - 5280712
Alignment:
Q  896 attttctttgtcccaaaatataagcaaaaa 925  Q
    ||||||||||||||||||||||||||||||    
T  5280741 attttctttgtcccaaaatataagcaaaaa 5280712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 896 - 925
Target Start/End: Complemental strand, 40808973 - 40808944
Alignment:
Q  896 attttctttgtcccaaaatataagcaaaaa 925  Q
    ||||||||||||||||||||||||||||||    
T  40808973 attttctttgtcccaaaatataagcaaaaa 40808944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 5e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 859 - 1098
Target Start/End: Complemental strand, 12449235 - 12448980
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttatcttttcc-aga--nnnnn 953  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||           
T  12449235 atactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttttccaagattttttt 12449136  T
Q  954 nngttattctcataaaa-taaatgc-aattacattcaattttctctc-ctcttcatttttccata--ccatggcca--taaaaatgttttaacatcttcc 1046  Q
       |||||||||||||| ||||||| ||||||||||||||||||||| || |   ||||||||||  | |||||||   |||| |||||| |||||||||    
T  12449135 tgtttattctcataaaattaaatgcaaattacattcaattttctctctctttgattttttccataaccaatggccaatgaaaattgtttttacatcttcc 12449036  T
Q  1047 tataaaac-cttttcagagaaaac---caaaactatactccaaattcttatgttta 1098  Q
    ||||||||  |||||| |||||||    ||||||||||||||||||||||| ||||    
T  12449035 tataaaacttttttcaaagaaaacacaaaaaactatactccaaattcttattttta 12448980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 857 - 1097
Target Start/End: Complemental strand, 32624276 - 32624019
Alignment:
Q  857 aaatactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttatcttttcc-aga---nn 950  Q
    ||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||         
T  32624276 aaatactccatccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttttccaagattttt 32624177  T
Q  951 nnnnngttattctcataaaa-taaatgc-aattacattcaattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatct 1043  Q
          |||||||||||||| ||||||| |||||||||||||||||||||   |||| ||||||||||  | |||||||   |||| |||||| ||||||    
T  32624176 ttttgtttattctcataaaattaaatgcaaattacattcaattttctctctctttcattttttccataaccaatggccaatgaaaattgtttttacatct 32624077  T
Q  1044 tcctataaaac-cttttcagagaaaac---caaaactatactccaaattcttatgttt 1097  Q
    |||||||||||  |||||| |||||||    ||||||| |||||||||||||||||||    
T  32624076 tcctataaaacttttttcaaagaaaacacaaaaaactacactccaaattcttatgttt 32624019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 859 - 946
Target Start/End: Original strand, 24190364 - 24190452
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagcaaaaagacaagcttttatcttttcca 946  Q
    |||||||| ||||||||||||||||||        |||||||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  24190364 atactcccaccgtcccataatataagcaaaaaaaacacattttctttgtaccaaaatataagaaaaaagacaaacttttatcttttcca 24190452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 893 - 946
Target Start/End: Complemental strand, 39555819 - 39555765
Alignment:
Q  893 cacattttctttgtcccaaaatataagca-aaaagacaagcttttatcttttcca 946  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  39555819 cacattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttttcca 39555765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 859 - 943
Target Start/End: Complemental strand, 43667568 - 43667482
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttatctttt 943  Q
    ||||||||||||||||||||||||||         ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  43667568 atactccctccgtcccataatataagaaaaaaaaacacattttctttgtctcaaaatataagcaaaaaagacaaacttttatctttt 43667482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 859 - 941
Target Start/End: Complemental strand, 15959939 - 15959855
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttatctt 941  Q
    |||||||||||||||||||||||||||        | ||||||||||||||||||||||||||| |||||||||  |||||||||    
T  15959939 atactccctccgtcccataatataagcaaaaaaaactcattttctttgtcccaaaatataagcaaaaaagacaaatttttatctt 15959855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 6786736 - 6786781
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttatc 939  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||    
T  6786736 cattttctttgtcccaaaatataagcaaaaaagacaaacttttatc 6786781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 859 - 939
Target Start/End: Complemental strand, 6787290 - 6787208
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttatc 939  Q
    |||||||||||||||||||||||||||        | |||||||||| |||||||||||||||| ||||||||| ||||||||    
T  6787290 atactccctccgtcccataatataagcaaaaaaaactcattttctttatcccaaaatataagcaaaaaagacaaacttttatc 6787208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 895 - 939
Target Start/End: Complemental strand, 7468215 - 7468170
Alignment:
Q  895 cattttctttgtcccaaaatataagca-aaaagacaagcttttatc 939  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  7468215 cattttctttgtcccaaaatataagcaaaaaagacaaacttttatc 7468170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 957 - 1097
Target Start/End: Complemental strand, 15959805 - 15959654
Alignment:
Q  957 ttattctcataaaat-aaatgcaa-ttacattcaattttctctcctcttca--tttttccatacc--atggccat--aaaaatgttttaacatcttccta 1048  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| |||| |  |||||||||| |  || ||||   |||| |||||| |||||||||||    
T  15959805 ttattctcataaaattaaatgcaaattacattcaattttctctc-tctttaattttttccataaccaatagccaatgaaaattgtttttacatcttccta 15959707  T
Q  1049 taaaacctttt-cagagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||||| |||| || |||||||    |||| ||||||||||||||||||||||    
T  15959706 taaaacttttttcaaagaaaacacaaaaaattatactccaaattcttatgttt 15959654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 856 - 925
Target Start/End: Original strand, 16853994 - 16854064
Alignment:
Q  856 aaaatactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagcaaaaa 925  Q
    ||||||||||||| ||||||||||||||||        | |||||||||||||||||||||||||||||||    
T  16853994 aaaatactccctctgtcccataatataagcaaaaaaaactcattttctttgtcccaaaatataagcaaaaa 16854064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 895 - 939
Target Start/End: Complemental strand, 28017006 - 28016961
Alignment:
Q  895 cattttctttgtcccaaaatataagca-aaaagacaagcttttatc 939  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  28017006 cattttctttgtcccaaaatataagcaaaaaagacaaacttttatc 28016961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 896 - 937
Target Start/End: Original strand, 43765204 - 43765245
Alignment:
Q  896 attttctttgtcccaaaatataagcaaaaagacaagctttta 937  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  43765204 attttctttgtcccaaaatgtaagcaaaaagacaaactttta 43765245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 895 - 938
Target Start/End: Complemental strand, 44149094 - 44149050
Alignment:
Q  895 cattttctttgtcccaaaatataagca-aaaagacaagcttttat 938  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||    
T  44149094 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 44149050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 893 - 943
Target Start/End: Original strand, 2125965 - 2126016
Alignment:
Q  893 cacattttctttgtcccaaaatataag-caaaaagacaagcttttatctttt 943  Q
    |||||||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  2125965 cacattttctttgtcctaaaatataagtaaaaaagacaaacttttatctttt 2126016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Complemental strand, 3875106 - 3875033
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaaccttttcagagaaaacca--aaactatactccaaattcttatgttt 1097  Q
    |||| |||||| |||| |||||||||||| |||||| | |||| ||  |||||||||| |||||||||||||||    
T  3875106 aaaattgtttttacatattcctataaaactttttcaaaaaaaaacacaaaactatacttcaaattcttatgttt 3875033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Original strand, 4672798 - 4672828
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  4672798 cattttctttgtcccaaaatataagcaaaaa 4672828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Original strand, 46542880 - 46542910
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  46542880 cattttctttgtcccaaaatataagcaaaaa 46542910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Original strand, 2126110 - 2126185
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaaccttttc-agagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| ||||||||||||||||| ||||| | |||||||    ||||||||| |||||||||||||||||    
T  2126110 aaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaactatattccaaattcttatgttt 2126185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1038 - 1097
Target Start/End: Original strand, 11241111 - 11241174
Alignment:
Q  1038 acatcttcctataaaaccttttc-agagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    ||||||||||||||||| ||||| | |||||||    |||||||||||||||||||||||||||    
T  11241111 acatcttcctataaaactttttccaaagaaaacacaaaaaactatactccaaattcttatgttt 11241174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Complemental strand, 28016835 - 28016760
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaacctttt-cagagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| ||||||||||||||||| |||| || |||||||    |||||||||||| ||||||||||||||    
T  28016835 aaaattgtttttacatcttcctataaaacatttttcaaagaaaacaccaaaaactatactctaaattcttatgttt 28016760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 33369452 - 33369497
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttatc 939  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||    
T  33369452 cattttctttgtcctagaatataagcaaaaaagacaagcttttatc 33369497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 896 - 925
Target Start/End: Complemental strand, 44056543 - 44056514
Alignment:
Q  896 attttctttgtcccaaaatataagcaaaaa 925  Q
    ||||||||||||||||||||||||||||||    
T  44056543 attttctttgtcccaaaatataagcaaaaa 44056514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 8e-18; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 859 - 1097
Target Start/End: Original strand, 2229137 - 2229392
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn--cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatcttttcc---agannnn 952  Q
    |||||||||||||||||||||||||||         |||||||||||||||||||||||||||| |||||||||| ||||||||||||||   |          
T  2229137 atactccctccgtcccataatataagcaaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttttccaatatttttt 2229236  T
Q  953 nnngttattctcataa-aataaatgc-aattacattcaattttctctcctcttca-tttttccata--ccatggcc-ataaaaa-tgttttaacatcttc 1045  Q
       ||||||||||||| | ||||||| |||||||||||||||||| |    |||| ||||||||||  | || ||| ||||||| |||||| ||||||||    
T  2229237 tttgttattctcataatattaaatgcaaattacattcaattttctttttctttcattttttccataaccaatagccaataaaaattgtttttacatcttc 2229336  T
Q  1046 ctataaaacctttt-cagagaaaac---caaaactatactccaaattcttatgttt 1097  Q
    ||||||||| |||| || |||||||    |||||||||||||||||||||||||||    
T  2229337 ctataaaactttttccaaagaaaacacaaaaaactatactccaaattcttatgttt 2229392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 860 - 946
Target Start/End: Original strand, 14332651 - 14332739
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatcttttcca 946  Q
    |||||||||||| |||||||||||||        |||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  14332651 tactccctccgttccataatataagcaaaaaaaacacattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttttcca 14332739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 857 - 1097
Target Start/End: Original strand, 47867768 - 47868024
Alignment:
Q  857 aaatactccctccgtcccataatataagcnnnnnnnc-acattttctttgtcccaaaatataagc-aaaaagacaagcttttatc-ttttccaga--nnn 951  Q
    |||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||| ||||||| || |||||||| ||||| |||         
T  47867768 aaatactccctctgtcccataatataagcaaaaaaaatacattttctttgtcccaaaatataagcaaaaaagaaaaacttttatctttttcaagattttt 47867867  T
Q  952 nnnngttattctcataaaa-taaatgc-aattacattcaattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatctt 1044  Q
        ||||||||||||||| ||||||| ||||||||||||||||||||    |||| ||||||||||  | || ||||   |||| |||||| |||||||    
T  47867868 ttttgttattctcataaaattaaatgcaaattacattcaattttctctttctttcattttttccataaccaatagccaatgaaaattgtttttacatctt 47867967  T
Q  1045 cctataaaacctttt-cagagaaaac---caaaactatactccaaattcttatgttt 1097  Q
    |||||||||| |||| || |||||||    |||||||||||||||||||||||||||    
T  47867968 cctataaaactttttccaaagaaaacacaaaaaactatactccaaattcttatgttt 47868024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 894 - 1097
Target Start/End: Complemental strand, 41414834 - 41414618
Alignment:
Q  894 acattttctttgtcccaaaatataag-caaaaagacaagcttttatc-ttttccagannnnnnng-ttattctcataaaa-taaatgc-aattacattca 988  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||| ||||| |||       | ||||||| |||||| ||||||| |||||||||||    
T  41414834 acattttctttgtcccaaaatataagtaaaaaagacaaacttttatctttttcaagatttttttgtttattcttataaaattaaatgcaaattacattca 41414735  T
Q  989 attttctctcctcttcatttttccata--ccatggcc-ataaaaa-tgttttaacatcttcctataaaac-cttttcagagaaaac---caaaactatac 1080  Q
    ||||| ||||   ||||||||| ||||  | || ||| ||||||| |||||| |||||||||||||||||  |||||| |||||||    ||||||||||    
T  41414734 attttttctctctttcattttttcataatcaatagccaataaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatac 41414635  T
Q  1081 tccaaattcttatgttt 1097  Q
    |||| ||||||||||||    
T  41414634 tccatattcttatgttt 41414618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 893 - 943
Target Start/End: Complemental strand, 28669226 - 28669175
Alignment:
Q  893 cacattttctttgtcccaaaatataagcaaaaa-gacaagcttttatctttt 943  Q
    ||||||||||||||||||||||||||||||||| |||||  |||||||||||    
T  28669226 cacattttctttgtcccaaaatataagcaaaaaggacaaatttttatctttt 28669175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 893 - 946
Target Start/End: Original strand, 7654553 - 7654607
Alignment:
Q  893 cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatcttttcca 946  Q
    |||||||||||| ||| ||||||||||| |||||||||| |||||||||||||||    
T  7654553 cacattttctttatcctaaaatataagcaaaaaagacaaacttttatcttttcca 7654607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 857 - 938
Target Start/End: Complemental strand, 16605129 - 16605046
Alignment:
Q  857 aaatactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttat 938  Q
    ||||||||||| |||||||||||||||||        | ||||||||||||||||||||||||||| ||||||||| |||||||    
T  16605129 aaatactcccttcgtcccataatataagctaaaaaaactcattttctttgtcccaaaatataagcaaaaaagacaaacttttat 16605046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Original strand, 4058785 - 4058860
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaacctttt-cagagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| ||||||||||||||||| |||| || |||||||    |||||||||||||||||||||||||||    
T  4058785 aaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactccaaattcttatgttt 4058860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Complemental strand, 16604928 - 16604853
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaac-cttttcagagaaaac---caaaactatactccaaattcttatgttt 1097  Q
    |||| ||||||||||||||||||||||||  |||||| |||||||    |||||||||||| ||||||||||||||    
T  16604928 aaaattgttttaacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactctaaattcttatgttt 16604853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 895 - 939
Target Start/End: Complemental strand, 17187037 - 17186992
Alignment:
Q  895 cattttctttgtcccaaaatataagca-aaaagacaagcttttatc 939  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  17187037 cattttctttgtcccaaaatataagcaaaaaagacaaacttttatc 17186992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Original strand, 20281661 - 20281736
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaaccttttc-agagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| ||||||||||||||||| ||||| | |||||||    |||||||||||||||||||||||||||    
T  20281661 aaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaactatactccaaattcttatgttt 20281736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 893 - 925
Target Start/End: Complemental strand, 30012163 - 30012131
Alignment:
Q  893 cacattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||||    
T  30012163 cacattttctttgtcccaaaatataagcaaaaa 30012131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 895 - 938
Target Start/End: Original strand, 35529568 - 35529612
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttat 938  Q
    |||||||||||||||||||||||||| |||||||||| |||||||    
T  35529568 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 35529612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 895 - 938
Target Start/End: Complemental strand, 48793881 - 48793837
Alignment:
Q  895 cattttctttgtcccaaaatataagca-aaaagacaagcttttat 938  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||    
T  48793881 cattttctttgtcccaaaatataagcataaaagacaaacttttat 48793837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 893 - 946
Target Start/End: Original strand, 20281519 - 20281571
Alignment:
Q  893 cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatcttttcca 946  Q
    |||||||||||||| ||||||||||||| |||||||||  |||||||||||||||    
T  20281519 cacattttctttgttccaaaatataagcaaaaaagaca--cttttatcttttcca 20281571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 896 - 938
Target Start/End: Original strand, 42915427 - 42915470
Alignment:
Q  896 attttctttgtcccaaaatataagc-aaaaagacaagcttttat 938  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  42915427 attttctttgtcccaaaatataagcaaaaaagacaaacttttat 42915470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 895 - 937
Target Start/End: Original strand, 55580564 - 55580607
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagctttta 937  Q
    |||||||||||||||||||||||||| |||||||||| ||||||    
T  55580564 cattttctttgtcccaaaatataagcaaaaaagacaaactttta 55580607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 870 - 925
Target Start/End: Original strand, 26916228 - 26916283
Alignment:
Q  870 gtcccataatataagcnnnnnnncacattttctttgtcccaaaatataagcaaaaa 925  Q
    ||||||||||||||||       ||||||||||||||| |||||||||||||||||    
T  26916228 gtcccataatataagcaaaaaaacacattttctttgtctcaaaatataagcaaaaa 26916283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 893 - 946
Target Start/End: Complemental strand, 56318296 - 56318243
Alignment:
Q  893 cacattttctttgtcccaaaatataagca-aaaagacaagcttttatcttttcca 946  Q
    |||||||| |||||||||||||||||||| ||||||||  |||||||||||||||    
T  56318296 cacatttt-tttgtcccaaaatataagcaaaaaagacatacttttatcttttcca 56318243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Original strand, 26916395 - 26916470
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaacctttt-cagagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| ||||||||||||||||| |||| || |||||||    ||||| |||||||||||||||||||||    
T  26916395 aaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaaccatactccaaattcttatgttt 26916470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 39078054 - 39078099
Alignment:
Q  895 cattttctttgtcccaaaatataag-caaaaagacaagcttttatc 939  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||    
T  39078054 cattttctttgtcccaaaatataagtaaaaaagacaaacttttatc 39078099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Original strand, 55580740 - 55580815
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaaccttttc-agagaaaaccaaaa---ctatactccaaattcttatgttt 1097  Q
    |||| |||||| ||||||||||||| ||| ||||| | ||||||| ||||   |||||||||||||||||||||||    
T  55580740 aaaattgtttttacatcttcctatacaactttttccaaagaaaacaaaaaaaactatactccaaattcttatgttt 55580815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 3e-17; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 859 - 943
Target Start/End: Complemental strand, 41086655 - 41086569
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnncacattttctttgtcccaaaatataagca--aaaagacaagcttttatctttt 943  Q
    ||||||||||||||||| |||||||||       |||||||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  41086655 atactccctccgtcccacaatataagcaaaaaaacacattttctttgtcccaaaatataagcaaaaaaagacaaacttttatctttt 41086569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 893 - 1097
Target Start/End: Original strand, 7858454 - 7858673
Alignment:
Q  893 cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatcttttcc-aga--nnnnnnngttattctcataaaa-taaatgc-aattacatt 986  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||          |||||||||||||| ||||||| |||||| ||    
T  7858454 cacattttctttgtcccaaaatataagcaaaaaagacaaacttttatcttttccaagattttttttgtttattctcataaaattaaatgcaaattacttt 7858553  T
Q  987 caattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatcttcctataaaac-cttttcagagaaaac---caaaacta 1077  Q
    ||||||||||||   |||| ||||||||||  | |||| ||   |||| |||||| |||||||||||||||||  |||||| | |||||    |||||||    
T  7858554 caattttctctctctttcattttttccataatcaatggtcaatgaaaattgtttttacatcttcctataaaacttttttcaaataaaacacaaaaaacta 7858653  T
Q  1078 tactccaaattcttatgttt 1097  Q
    ||||||||||||||||||||    
T  7858654 tactccaaattcttatgttt 7858673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 893 - 943
Target Start/End: Complemental strand, 7022637 - 7022586
Alignment:
Q  893 cacattttctttgtcccaaaatataagca-aaaagacaagcttttatctttt 943  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  7022637 cacattttctttgtcccaaaatataagcaaaaaagacaaacttttatctttt 7022586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 859 - 941
Target Start/End: Complemental strand, 34890474 - 34890390
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttatctt 941  Q
    |||||||||||||||||||||||||||        | ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  34890474 atactccctccgtcccataatataagcaaaaaaaactcattttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 34890390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 957 - 1097
Target Start/End: Complemental strand, 34890340 - 34890189
Alignment:
Q  957 ttattctcataaaat-aaatgcaa-ttacattcaattttctctcctcttcattttt-ccatacc--atggccat--aaaaatgttttaacatcttcctat 1049  Q
    ||||||||||||||| |||||||| |||||||||||||||||||   ||||||||| ||||| |  || ||||   |||| |||||| ||||||||||||    
T  34890340 ttattctcataaaattaaatgcaaattacattcaattttctctctctttcattttttccataaccaatagccaatgaaaattgtttttacatcttcctat 34890241  T
Q  1050 aaaaccttttc-agagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    ||||| ||||| | |||||||    |||| ||||||||||||||||||||||    
T  34890240 aaaactttttccaaagaaaacacaaaaaattatactccaaattcttatgttt 34890189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 957 - 1097
Target Start/End: Original strand, 36190766 - 36190917
Alignment:
Q  957 ttattctcataaaat-aaatgcaa-ttacattcaattttctctc-ctcttcatttttccatacc--atggccat--aaaaatgttttaacatcttcctat 1049  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| || ||  |||||||||| |  || ||||   |||| |||||| ||||||||||||    
T  36190766 ttattctcataaaattaaatgcaaattacattcaattttctctctcttttattttttccataaccaatagccaatgaaaattgtttttacatcttcctat 36190865  T
Q  1050 aaaacctttt-cagagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    ||||| |||| || |||||||    |||||||||||| ||||||||||||||    
T  36190866 aaaacttttttcaaagaaaacacaaaaaactatactctaaattcttatgttt 36190917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 897 - 939
Target Start/End: Original strand, 28348511 - 28348553
Alignment:
Q  897 ttttctttgtcccaaaatataagcaaaaagacaagcttttatc 939  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  28348511 ttttctttgtcccaaaatataagaaaaaagacaaacttttatc 28348553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 957 - 1097
Target Start/End: Original strand, 28348605 - 28348755
Alignment:
Q  957 ttattctcataaaat-aaatgcaa-ttacattcaattttctctcctcttcatttttccata--ccatggcca--taaaaatgttttaacatcttcctata 1050  Q
    ||||||||||||||| |||||||| |||||||||||||||||||   ||||||||||||||  | || ||||    ||| |||||| |||| ||||||||    
T  28348605 ttattctcataaaattaaatgcaaattacattcaattttctctctctttcatttttccataaccaatagccaatggaaattgtttttacatattcctata 28348704  T
Q  1051 aaaccttttc---agagaaaaccaaa-actatactccaaattcttatgttt 1097  Q
    |||| |||||   ||| || || ||| ||||||||||||||||||||||||    
T  28348705 aaactttttccaaagaaaatacaaaatactatactccaaattcttatgttt 28348755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 893 - 946
Target Start/End: Original strand, 20051504 - 20051557
Alignment:
Q  893 cacattttctttgtcccaaaatataagcaaaaagacaagcttttatcttttcca 946  Q
    |||||||||||||| |||||||||||| |||| |||||  ||||||||||||||    
T  20051504 cacattttctttgtaccaaaatataagaaaaacgacaaatttttatcttttcca 20051557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Original strand, 35525657 - 35525730
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaacctttt-cagagaaaac-caaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| |||||||||| |||||| |||| || ||||||| ||||||||||||| ||||||||||||||    
T  35525657 aaaattgtttttacatcttcctgtaaaacttttttcaaagaaaacacaaaactatactctaaattcttatgttt 35525730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Complemental strand, 43216437 - 43216362
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaacctttt-cagagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| ||||||||||||||||| |||| || |||||||    |||||||||||||||||||||||||||    
T  43216437 aaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactccaaattcttatgttt 43216362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 895 - 938
Target Start/End: Complemental strand, 4047157 - 4047113
Alignment:
Q  895 cattttctttgtcccaaaatataagca-aaaagacaagcttttat 938  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||    
T  4047157 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 4047113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Complemental strand, 13144036 - 13143960
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaac--cttttcagagaaaac---caaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| |||||||||||||||||   |||||| |||||||    |||||||||||||||||||||||||||    
T  13144036 aaaattgtttttacatcttcctataaaactttttttcaaagaaaacacaaaaaactatactccaaattcttatgttt 13143960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 925
Target Start/End: Complemental strand, 15958185 - 15958117
Alignment:
Q  858 aatactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||         || ||||||||||||||||||||||||||||||    
T  15958185 aatactccctccgtcccataatataagaaaaaaaaacatattttctttgtcccaaaatataagcaaaaa 15958117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Complemental strand, 8107882 - 8107852
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  8107882 cattttctttgtcccaaaatataagcaaaaa 8107852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Original strand, 13143661 - 13143691
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  13143661 cattttctttgtcccaaaatataagcaaaaa 13143691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Original strand, 36190668 - 36190698
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  36190668 cattttctttgtcccaaaatataagcaaaaa 36190698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 895 - 925
Target Start/End: Complemental strand, 43216618 - 43216588
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaa 925  Q
    |||||||||||||||||||||||||||||||    
T  43216618 cattttctttgtcccaaaatataagcaaaaa 43216588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 939
Target Start/End: Complemental strand, 13144224 - 13144179
Alignment:
Q  895 cattttctttgtcccaaaatataagca-aaaagacaagcttttatc 939  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  13144224 cattttctttgtctcaaaatataagcaaaaaagacaaacttttatc 13144179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 24892735 - 24892780
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttatc 939  Q
    |||||||||||| ||||||||||||| |||||||||| ||||||||    
T  24892735 cattttctttgttccaaaatataagcaaaaaagacaaacttttatc 24892780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 943
Target Start/End: Original strand, 26483460 - 26483509
Alignment:
Q  894 acattttctttgtcccaaaatataagcaaaaagacaagcttttatctttt 943  Q
    ||||||||||||| |||||||||||| ||||| |||| ||||||| ||||    
T  26483460 acattttctttgtaccaaaatataagaaaaaacacaaacttttatttttt 26483509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 896 - 925
Target Start/End: Complemental strand, 30576089 - 30576060
Alignment:
Q  896 attttctttgtcccaaaatataagcaaaaa 925  Q
    ||||||||||||||||||||||||||||||    
T  30576089 attttctttgtcccaaaatataagcaaaaa 30576060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 35525495 - 35525540
Alignment:
Q  895 cattttctttgtcccaaaatataag-caaaaagacaagcttttatc 939  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||    
T  35525495 cattttctttgtcccaaaatataagtaaaaaagacaaacttttatc 35525540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 3e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 857 - 946
Target Start/End: Complemental strand, 11262154 - 11262063
Alignment:
Q  857 aaatactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataag-caaaaagacaagcttttatcttttcca 946  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||  |||||||||| |||||||||||||||    
T  11262154 aaatactccctccgtcccataatataagcaaaaaaaacacattttctttgtcccaaaatataagtaaaaaagacaaacttttatcttttcca 11262063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 859 - 946
Target Start/End: Complemental strand, 37522858 - 37522769
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttatcttttcca 946  Q
    |||||||||||||||||||||||||||        ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  37522858 atactccctccgtcccataatataagcaaaaaaaacacattttcttcgtcccaaaatataagcaaaaaagacaaacttttatcttttcca 37522769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 859 - 946
Target Start/End: Complemental strand, 37563030 - 37562941
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttatcttttcca 946  Q
    ||||||| |||||||||||||||||||        ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  37563030 atactccatccgtcccataatataagcaaaaaaaacacattttcttcgtcccaaaatataagcaaaaaagacaaacttttatcttttcca 37562941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 893 - 1097
Target Start/End: Original strand, 6686311 - 6686532
Alignment:
Q  893 cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatcttttcc-aga---nnnnnnngttattctcataaaa-taaatgc-aattacat 985  Q
    |||||||||||||||||||||||||| | ||||||| || |||||||||||||| |||          ||||||||||||||| ||||||| ||||||||    
T  6686311 cacattttctttgtcccaaaatataaacaaaaaagataaacttttatcttttccaagattttttttttgttattctcataaaattaaatgcaaattacat 6686410  T
Q  986 tcaattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatcttcctataaaacctttt--cagagaaaac---caaaac 1075  Q
    ||||||||||||    |||| ||||||||||  | || ||||   |||| |||||| ||||||||||||||||| ||||  || |||||||    |||||    
T  6686411 tcaattttctctttctttcattttttccataaccaatagccaatgaaaattgtttttacatcttcctataaaacttttttccaaagaaaacacaaaaaac 6686510  T
Q  1076 tatactccaaattcttatgttt 1097  Q
    ||||||||||||||||||||||    
T  6686511 tatactccaaattcttatgttt 6686532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 859 - 1097
Target Start/End: Complemental strand, 43590231 - 43589976
Alignment:
Q  859 atactccctccgtcccataatataagcnnnnnnn--cacattttctttgtcccaaaatataagca-aaaagacaagcttttatc-ttttccaga--nnnn 952  Q
    |||||||||||||||||||||||||||         |||||||||||||| |||||||||||||| |||| |||| |||||||| ||||| |||          
T  43590231 atactccctccgtcccataatataagcaaaaaaaaacacattttctttgtaccaaaatataagcaaaaaatacaaacttttatctttttcaagatttttt 43590132  T
Q  953 nnngttattctcataaaa-taaatgc-aattacattcaattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatcttc 1045  Q
       ||||||||||||||| ||||||| ||||||||||||||||||||    |||| ||||||||||  | || ||||   |||| |||||| |||||| |    
T  43590131 tttgttattctcataaaattaaatgcaaattacattcaattttctctttctttcattttttccataaccaatagccaatgaaaattgtttttacatctcc 43590032  T
Q  1046 ctataaaaccttttc-agagaaaac---caaaactatactccaaattcttatgttt 1097  Q
    ||||||||| ||||| | |||||||    |||||||||||||||||||||||||||    
T  43590031 ctataaaactttttcaaaagaaaacacaaaaaactatactccaaattcttatgttt 43589976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 893 - 946
Target Start/End: Complemental strand, 842799 - 842745
Alignment:
Q  893 cacattttctttgtcccaaaatataagca-aaaagacaagcttttatcttttcca 946  Q
    ||||||||||||||||||||||||||||| |||||| || |||||||||||||||    
T  842799 cacattttctttgtcccaaaatataagcaaaaaagataaacttttatcttttcca 842745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 895 - 941
Target Start/End: Complemental strand, 9957678 - 9957631
Alignment:
Q  895 cattttctttgtcccaaaatataagca-aaaagacaagcttttatctt 941  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  9957678 cattttctttgtcccaaaatataagcaaaaaagacaaacttttatctt 9957631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 860 - 941
Target Start/End: Original strand, 20643877 - 20643960
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatctt 941  Q
    ||||||||||||||||||||||||||        | |||||||||| ||||||||||||||| |||||||||| ||||||||||    
T  20643877 tactccctccgtcccataatataagcaaaaaaaactcattttctttatcccaaaatataagcaaaaaagacaaacttttatctt 20643960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 893 - 938
Target Start/End: Original strand, 25840760 - 25840806
Alignment:
Q  893 cacattttctttgtcccaaaatataagcaaaaa-gacaagcttttat 938  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  25840760 cacattttctttgtcccaaaatataagcaaaaatgacaaacttttat 25840806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 8225362 - 8225407
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttatc 939  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||    
T  8225362 cattttctttgtcccaaaatataagcaaaaaagacaaacttttatc 8225407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 42273548 - 42273593
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttatc 939  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||    
T  42273548 cattttctttgtcccaaaatataagcaaaaaagacaaacttttatc 42273593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 895 - 938
Target Start/End: Complemental strand, 39505494 - 39505450
Alignment:
Q  895 cattttctttgtcccaaaatataagca-aaaagacaagcttttat 938  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||    
T  39505494 cattttctttgtcccaaaatataagcaaaaaagacaaacttttat 39505450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 939
Target Start/End: Complemental strand, 12730249 - 12730204
Alignment:
Q  895 cattttctttgtcccaaaatataag-caaaaagacaagcttttatc 939  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||    
T  12730249 cattttctttgtcccaaaatataagtaaaaaagacaaacttttatc 12730204  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1038 - 1097
Target Start/End: Original strand, 20039186 - 20039249
Alignment:
Q  1038 acatcttcctataaaacctttt-cagagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||||||||||||||||||||| || |||||||    |||| ||||||||||||||||||||||    
T  20039186 acatcttcctataaaacctttttcaaagaaaacacaaaaaattatactccaaattcttatgttt 20039249  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Original strand, 20644086 - 20644161
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaaccttttc-agagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| ||||||||||||||||| ||||| | |||||||    |||| ||||||||||||||||||||||    
T  20644086 aaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaattatactccaaattcttatgttt 20644161  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 34425229 - 34425274
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttatc 939  Q
    |||||||||||||| ||||||||||| |||||||||| ||||||||    
T  34425229 cattttctttgtcctaaaatataagcaaaaaagacaaacttttatc 34425274  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1026 - 1097
Target Start/End: Original strand, 42273719 - 42273794
Alignment:
Q  1026 aaaaatgttttaacatcttcctataaaaccttttc-agagaaaacc---aaaactatactccaaattcttatgttt 1097  Q
    |||| |||||| |||||||| |||||||| ||||| | |||||||    |||||||||||||||||||||||||||    
T  42273719 aaaattgtttttacatcttcttataaaactttttccaaagaaaacacaaaaaactatactccaaattcttatgttt 42273794  T

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Target: scaffold0045 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 893 - 943
Target Start/End: Original strand, 77885 - 77936
Alignment:
Q  893 cacattttctttgtcccaaaatataagc-aaaaagacaagcttttatctttt 943  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  77885 cacattttctttgtcccaaaatataagcaaaaaagacaaacttttatctttt 77936  T

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Target: scaffold0300 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 860 - 1097
Target Start/End: Complemental strand, 840 - 587
Alignment:
Q  860 tactccctccgtcccataatataagcnnnnnnn-cacattttctttgtcccaaaatataagca-aaaagacaagcttttatcttttcc-aga--nnnnnn 954  Q
    ||||||||| ||||||||||||||||        |||||||||||||| |||||||||||||| |||| |||| |||||||||||||| |||            
T  840 tactccctcagtcccataatataagcaaaaaaaacacattttctttgtaccaaaatataagcaaaaaacacaaacttttatcttttccaagatttttttt 741  T
Q  955 ngttattctcataaaa-taaatgc-aattacattcaattttctctcctcttca-tttttccata--ccatggcca--taaaaatgttttaacatcttcct 1047  Q
     ||||||||||||||| ||||||| |||||||||||||||| |||    |||| ||||||||||  | || ||||   |||| |||||| |||||| |||    
T  740 tgttattctcataaaattaaatgcaaattacattcaattttatctttctttcattttttccataaccaatagccaatgaaaattgtttttacatctccct 641  T
Q  1048 ataaaac-cttttcagagaaaac---caaaactatactccaaattcttatgttt 1097  Q
    |||||||  |||||| |||||||    |||||||||||||||||||||||||||    
T  640 ataaaacttttttcaaagaaaacacataaaactatactccaaattcttatgttt 587  T

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Target: scaffold0132 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 911 - 956
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttatc 939  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||    
T  911 cattttctttgtcccaaaatataagcaaaaaagacaaacttttatc 956  T

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Target: scaffold0132; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 8871 - 8916
Alignment:
Q  895 cattttctttgtcccaaaatataagc-aaaaagacaagcttttatc 939  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||    
T  8871 cattttctttgtcccaaaatataagcaaaaaagacaaacttttatc 8916  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 896 - 938
Target Start/End: Original strand, 157694 - 157737
Alignment:
Q  896 attttctttgtcccaaaatataagc-aaaaagacaagcttttat 938  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  157694 attttctttgtcccaaaatataagcaaaaaagacaaacttttat 157737  T

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Target: scaffold0774 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 899 - 944
Target Start/End: Complemental strand, 3655 - 3609
Alignment:
Q  899 ttctttgtcccaaaatataagca-aaaagacaagcttttatcttttc 944  Q
    ||||||||||||||||||||||| |||||| || |||||||||||||    
T  3655 ttctttgtcccaaaatataagcaaaaaagataaacttttatcttttc 3609  T

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Target: scaffold1157 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 936
Target Start/End: Complemental strand, 2101 - 2060
Alignment:
Q  895 cattttctttgtcccaaaatataagcaaaaagacaagctttt 936  Q
    |||||||| ||||||||| ||||||||||||||||| |||||    
T  2101 cattttctatgtcccaaattataagcaaaaagacaaactttt 2060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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