View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5024-Insertion-10 (Length: 477)

Name: NF5024-Insertion-10
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5024-Insertion-10
NF5024-Insertion-10
[»] chr3 (6 HSPs)
chr3 (8-477)||(51882396-51882865)
chr3 (233-299)||(14241617-14241683)
chr3 (233-299)||(14156770-14156836)
chr3 (303-419)||(41760504-41760620)
chr3 (189-288)||(25328347-25328446)
chr3 (133-163)||(10945524-10945554)
[»] chr8 (6 HSPs)
chr8 (9-301)||(27916215-27916507)
chr8 (9-301)||(27962634-27962926)
chr8 (9-331)||(21407537-21407859)
chr8 (9-331)||(21802029-21802351)
chr8 (233-299)||(15746276-15746342)
chr8 (303-419)||(33858522-33858638)
[»] scaffold0001 (1 HSPs)
scaffold0001 (9-325)||(198697-199013)
[»] scaffold0196 (1 HSPs)
scaffold0196 (9-331)||(31527-31849)
[»] chr4 (2 HSPs)
chr4 (9-331)||(10988209-10988531)
chr4 (303-419)||(31924432-31924548)
[»] chr1 (3 HSPs)
chr1 (189-422)||(21355037-21355270)
chr1 (138-328)||(24307369-24307559)
chr1 (303-419)||(16044534-16044650)
[»] chr5 (2 HSPs)
chr5 (9-126)||(33852429-33852546)
chr5 (228-331)||(33852281-33852384)
[»] scaffold0356 (1 HSPs)
scaffold0356 (303-419)||(6182-6298)
[»] chr2 (1 HSPs)
chr2 (306-422)||(15042779-15042895)
[»] scaffold0044 (1 HSPs)
scaffold0044 (340-420)||(61379-61459)


Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Original strand, 51882396 - 51882865
Alignment:
Q  8 taacacggatgggtcggttagaaatttgatgtccgcttgcggtggtatttttcgtgattattgcggaacttttcttggtgggttcgcaaccaatgttggt 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51882396 taacacggacgggtcggttagaaatttgatgtccgcttgcggtggtatttttcgtgattattgcggaacttttcttggtgggttcgcaaccaatgttggt 51882495  T
Q  108 agagtttctgttttcgaggttgaagttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttgaaagcgattcct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51882496 agagtttctgttttcgaggttgaagttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttgaaagcgattcct 51882595  T
Q  208 ctagtgcggcccagacatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttattatatgttc 307  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  51882596 ctagtgcggcccaggcatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaattgtactcacaatggtatgtttattatatgttc 51882695  T
Q  308 tcatatcttccgggaaggaaatgtctgtgttgatggtctaacaaccatggggcatgatttgcaagacatgatgtggttctctcttttgcctccatcttta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51882696 tcatatcttccgggaaggaaatgtctgtgttgatggtctaacagccatggggcatgatttgcaagacatgatgtggttctctcttttgcctccatcttta 51882795  T
Q  408 ggggcggattttgctgccaaactatagattcccctagctatttcagtttctatttttctgtatatattta 477  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51882796 ggggcggattttgctaccaaactatagattcccctagctatttcagtttctagttttctgtatatattta 51882865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 14241683 - 14241617
Alignment:
Q  233 accatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttatt 299  Q
    |||||||||||||||||||   ||||||||||||||||||||||| |||||||||||| ||||||||    
T  14241683 accatctcttattcatgttttccttcggaaccgttggcacaactgcactcacaatggtttgtttatt 14241617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 14156770 - 14156836
Alignment:
Q  233 accatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttatt 299  Q
    |||| |||||||||||||| |||||||||||||||||||||| || ||||| |||||| ||||||||    
T  14156770 accacctcttattcatgtttgtcttcggaaccgttggcacaattgcactcataatggtttgtttatt 14156836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 41760620 - 41760504
Alignment:
Q  303 tgttctcatatcttccgggaaggaaatgtctgtgttgatggtctaacaaccatggggcatgatttgcaagacatgatgtggttctctcttttgcctccat 402  Q
    |||||||||||||| |||||||| |||   ||||  ||||| ||  || || ||||||||||| |||||||||   |||||||| |||| |||||||| |    
T  41760620 tgttctcatatctttcgggaagggaattggtgtgcagatggcctggcagccttggggcatgatatgcaagacactttgtggttcactctgttgcctccct 41760521  T
Q  403 ctttaggggcggatttt 419  Q
    |||||||||||||||||    
T  41760520 ctttaggggcggatttt 41760504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 288
Target Start/End: Original strand, 25328347 - 25328446
Alignment:
Q  189 tggcttgaaagcgattcctctagtgcggcccagacatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatg 288  Q
    |||||||||||||| || |||||||||   ||| | ||||||||  | |||||||||||||| |||||  |||| |||||||||||||| ||||| ||||    
T  25328347 tggcttgaaagcgactcatctagtgcgattcaggcttttcataactcttctcttattcatgtgggtctctggaatcgttggcacaactgcactcataatg 25328446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 163
Target Start/End: Original strand, 10945524 - 10945554
Alignment:
Q  133 ttttgggtctcattttggctatggagtatgc 163  Q
    |||||||||||||||||||||||||||||||    
T  10945524 ttttgggtctcattttggctatggagtatgc 10945554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 27916215 - 27916507
Alignment:
Q  9 aacacggatgggtcggttagaaatttgatgtccgcttgcggtggtatttttcgtgattattgcggaacttttcttggtgggttcgcaaccaatgttggta 108  Q
    ||||| ||||||||||||  |||||| ||| | ||||| |||||| | || || || | | ||||||||||||||||||| ||||||| |||| |||| |    
T  27916215 aacacagatgggtcggttcaaaatttaatggctgcttgtggtggtgtcttccgcgactctagcggaacttttcttggtggattcgcaagcaatcttggca 27916314  T
Q  109 gagtttctgttttcgaggttgaagttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttgaaagcgattcctc 208  Q
     ||||||||| ||| | |  ||| |  |||| ||||||||| ||| ||| |||||   ||||||||  ||| | || |||||||||||||||||||| ||    
T  27916315 tagtttctgtcttccaagcagaaatcgtgggcctcattttgtctacggaatatgcaagttcaaacagctggactcgtttgtggcttgaaagcgattcttc 27916414  T
Q  209 tagtgcggcccagacatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttattat 301  Q
    ||||||||  ||  | || |||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||    
T  27916415 tagtgcggtacaagctttccataaaccatctcttattcaggttggtcttcgcaaccgttggcataattgtactcacaatggtctctttattat 27916507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 27962634 - 27962926
Alignment:
Q  9 aacacggatgggtcggttagaaatttgatgtccgcttgcggtggtatttttcgtgattattgcggaacttttcttggtgggttcgcaaccaatgttggta 108  Q
    ||||| ||||||||||||  |||||| ||| | ||||| |||||| | || || || | | ||||||||||||||||||| ||||||| |||| |||| |    
T  27962634 aacacagatgggtcggttcaaaatttaatggctgcttgtggtggtgtcttccgcgactctagcggaacttttcttggtggattcgcaagcaatcttggca 27962733  T
Q  109 gagtttctgttttcgaggttgaagttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttgaaagcgattcctc 208  Q
     ||||||||| ||| | |  ||| |  |||| ||||||||| ||| ||| |||||   ||||||||  ||| | || |||||||||||||||||||| ||    
T  27962734 tagtttctgtcttccaagcagaaatcgtgggcctcattttgtctacggaatatgcaagttcaaacagctggactcgtttgtggcttgaaagcgattcttc 27962833  T
Q  209 tagtgcggcccagacatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttattat 301  Q
    ||||||||  ||  | || |||||||||||||||||||  ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||    
T  27962834 tagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatggtctctttattat 27962926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 21407859 - 21407537
Alignment:
Q  9 aacacggatgggtcggttagaaatttgatgtccgcttgcggtggtatttttcgtgattattgcggaacttttcttggtgggttcgcaaccaatgttggta 108  Q
    ||||| ||||||||||||  |||||| ||| | ||||| |||||| | || || || | | ||||||||||||| ||||| ||||||| |||| |||| |    
T  21407859 aacacagatgggtcggttcaaaatttaatggctgcttgtggtggtgtcttccgcgactctcgcggaacttttctgggtggattcgcaagcaatcttggca 21407760  T
Q  109 gagtttctgttttcgaggttgaagttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttgaaagcgattcctc 208  Q
     |||||||||  || | |  ||| | ||||| ||||||||||||||||| |||||   ||||||||  ||| | || || ||||||||||| ||||| ||    
T  21407759 tagtttctgtcctccaagcagaaatcttgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttc 21407660  T
Q  209 tagtgcggcccagacatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttattatatgttct 308  Q
    ||||||||  ||  | || ||||||| |||||||||||  ||||||||||| ||||||||||| || ||||||||||||||||| |||||||| || ||     
T  21407659 tagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaatggtctctttattatttgctcc 21407560  T
Q  309 catatcttccgggaaggaaatgt 331  Q
    || |||||| | ||||| |||||    
T  21407559 cacatcttcagagaagggaatgt 21407537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 21802351 - 21802029
Alignment:
Q  9 aacacggatgggtcggttagaaatttgatgtccgcttgcggtggtatttttcgtgattattgcggaacttttcttggtgggttcgcaaccaatgttggta 108  Q
    ||||| ||||||||||||  |||||| ||| | ||||| |||||| | || || || | | ||||||||||||| ||||| ||||||| |||| |||| |    
T  21802351 aacacagatgggtcggttcaaaatttaatggctgcttgtggtggtgtcttccgcgactctcgcggaacttttctgggtggattcgcaagcaatcttggca 21802252  T
Q  109 gagtttctgttttcgaggttgaagttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttgaaagcgattcctc 208  Q
     |||||||||  || | |  ||| | ||||| ||||||||||||||||| |||||   ||||||||  ||| | || || ||||||||||| ||||| ||    
T  21802251 tagtttctgtcctccaagcagaaatcttgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttc 21802152  T
Q  209 tagtgcggcccagacatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttattatatgttct 308  Q
    ||||||||  ||  | || ||||||| |||||||||||  ||||||||||| ||||||||||| || ||||||||||||||||| |||||||| || ||     
T  21802151 tagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaatggtctctttattatttgctcc 21802052  T
Q  309 catatcttccgggaaggaaatgt 331  Q
    || |||||| | ||||| |||||    
T  21802051 cacatcttcagagaagggaatgt 21802029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 15746342 - 15746276
Alignment:
Q  233 accatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttatt 299  Q
    |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||    
T  15746342 accacctcttattcatgtttgtcttcggaaccgttggcacaactgcactcacaatggtttgtttatt 15746276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 33858638 - 33858522
Alignment:
Q  303 tgttctcatatcttccgggaaggaaatgtctgtgttgatggtctaacaaccatggggcatgatttgcaagacatgatgtggttctctcttttgcctccat 402  Q
    |||||||||||||| |||||||| |||   ||||  ||||| ||  || || ||||||||||| |||||||||   |||||||| |||| |||||||| |    
T  33858638 tgttctcatatctttcgggaagggaattggtgtgcagatggcctggcagccttggggcatgatatgcaagacactttgtggttcactctgttgcctccct 33858539  T
Q  403 ctttaggggcggatttt 419  Q
    |||||||||||||||||    
T  33858538 ctttaggggcggatttt 33858522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 199013 - 198697
Alignment:
Q  9 aacacggatgggtcggttagaaatttgatgtccgcttgcggtggtatttttcgtgattattgcggaacttttcttggtgggttcgcaaccaatgttggta 108  Q
    ||||| |||||||||||| ||||||| ||| | ||||| |||||| | || ||||| | | || |||||||||||||||| ||| ||| |||| |||| |    
T  199013 aacacagatgggtcggttcgaaatttaatggctgcttgtggtggtgtcttccgtgactctcgctgaacttttcttggtggtttcacaagcaatcttggca 198914  T
Q  109 gagtttctgttttcgaggttgaagttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttgaaagcgattcctc 208  Q
     ||||| ||| ||| | |  ||| |  |||| ||||||||||||||||| |||||   ||||||||  ||| | || || ||||||||||| ||||| ||    
T  198913 tagtttttgtcttccaagcagaaatcatgggcctcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttc 198814  T
Q  209 tagtgcggcccagacatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttattatatgttct 308  Q
    ||||||||  ||  | || ||| |||||||||||||||  ||||||||||| ||||||||||| || ||||||||||||||||| |||||||| || ||     
T  198813 tagtgcggtacaagctttccatcaaccatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaatggtctctttattatttgctcc 198714  T
Q  309 catatcttccgggaagg 325  Q
    || |||||||| |||||    
T  198713 cacatcttccgagaagg 198697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 31849 - 31527
Alignment:
Q  9 aacacggatgggtcggttagaaatttgatgtccgcttgcggtggtatttttcgtgattattgcggaacttttcttggtgggttcgcaaccaatgttggta 108  Q
    ||||| |||||||||||| ||| ||| ||| | ||||| |||||| | || ||||| | | ||||||||||||||||||| ||| |||  ||| |||| |    
T  31849 aacacagatgggtcggttcgaactttaatggctgcttgtggtggtgtcttccgtgactctcgcggaacttttcttggtggtttcacaagtaatcttggca 31750  T
Q  109 gagtttctgttttcgaggttgaagttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttgaaagcgattcctc 208  Q
     ||||||||| ||| | |  ||| |  |||| ||||||||||||||||| |||||   ||||||||  ||| | || || ||||||||||| ||||| ||    
T  31749 tagtttctgtcttccaagcagaaatcatgggactcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttc 31650  T
Q  209 tagtgcggcccagacatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttattatatgttct 308  Q
    ||||||||  ||  | || |||||||||||||||||||  ||| ||||||| ||||||||||| || ||||||||||| ||||| |||||||| || ||     
T  31649 tagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaagggtctctttattatttgctcc 31550  T
Q  309 catatcttccgggaaggaaatgt 331  Q
    || |||||||| ||||| |||||    
T  31549 cacatcttccgagaaggcaatgt 31527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 10988531 - 10988209
Alignment:
Q  9 aacacggatgggtcggttagaaatttgatgtccgcttgcggtggtatttttcgtgattattgcggaacttttcttggtgggttcgcaaccaatgttggta 108  Q
    ||||| |||||||||||| ||| ||| ||| | ||||| |||||| | || ||||| | | ||||||||||||||||||| ||| |||  ||| |||| |    
T  10988531 aacacagatgggtcggttcgaactttaatggctgcttgtggtggtgtcttccgtgactctcgcggaacttttcttggtggtttcacaagtaatcttggca 10988432  T
Q  109 gagtttctgttttcgaggttgaagttttgggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttgaaagcgattcctc 208  Q
     ||||||||| ||| | |  ||| |  |||| ||||||||||||||||| |||||   ||||||||  ||| | || || ||||||||||| ||||| ||    
T  10988431 tagtttctgtcttccaagcagaaatcatgggactcattttggctatggaatatgcaagttcaaacagctggactcgtttatggcttgaaagtgattcttc 10988332  T
Q  209 tagtgcggcccagacatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttattatatgttct 308  Q
    ||||||||  ||  | || |||||||||||||||||||  ||| ||||||| ||||||||||| || ||||||||||| ||||| |||||||| || ||     
T  10988331 tagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaagggtctctttattatttgctcc 10988232  T
Q  309 catatcttccgggaaggaaatgt 331  Q
    || |||||||| ||||| |||||    
T  10988231 cacatcttccgagaaggcaatgt 10988209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 31924432 - 31924548
Alignment:
Q  303 tgttctcatatcttccgggaaggaaatgtctgtgttgatggtctaacaaccatggggcatgatttgcaagacatgatgtggttctctcttttgcctccat 402  Q
    |||||||||||||| |||||||| |||   ||||  ||||| ||  || || ||||||||||| |||||||||   |||||||| |||| |||||||| |    
T  31924432 tgttctcatatctttcgggaagggaattggtgtgcagatggcctggcagccttggggcatgatatgcaagacactttgtggttcactctgttgcctccct 31924531  T
Q  403 ctttaggggcggatttt 419  Q
    |||||||||||||||||    
T  31924532 ctttaggggcggatttt 31924548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 189 - 422
Target Start/End: Original strand, 21355037 - 21355270
Alignment:
Q  189 tggcttgaaagcgattcctctagtgcggcccagacatttcataaaccatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatg 288  Q
    |||||||||||||| || ||||||||||  ||| | || ||||||||||||||||||| |||| ||||||||||||| || ||||||||||| || |||     
T  21355037 tggcttgaaagcgactcttctagtgcggttcaggctttccataaaccatctcttattcctgtttgtcttcggaaccgatgacacaactgtacacataata 21355136  T
Q  289 gtctgtttattatatgttctcatatcttccgggaaggaaatgtctgtgttgatggtctaacaaccatggggcatgatttgcaagacatgatgtggttctc 388  Q
     ||||||| | || ||||||||||| |||||| ||||||||||||||| | |||| ||  || |||||||||  ||| | |||| || | | |||||| |    
T  21355137 atctgtttctcatttgttctcatatattccggaaaggaaatgtctgtgcttatggacttgcagccatggggcgcgatattcaaggcacggtctggttcac 21355236  T
Q  389 tcttttgcctccatctttaggggcggattttgct 422  Q
    | | ||||||||||| || |||||||||||||||    
T  21355237 tttgttgcctccatccttgggggcggattttgct 21355270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 328
Target Start/End: Complemental strand, 24307559 - 24307369
Alignment:
Q  138 ggtctcattttggctatggagtatgcggcttcaaacaattggtcccgcttgtggcttgaaagcgattcctctagtgcggcccagacatttcataaaccat 237  Q
    |||| ||||||||| |||||| |||| ||   |||||||||| ||||| | |||||||| || ||||  ||||| ||||  ||| | |||||||| || |    
T  24307559 ggtcccattttggccatggagcatgcagccaaaaacaattggacccgcctttggcttgagagtgattgatctagcgcggttcaggcttttcataatcctt 24307460  T
Q  238 ctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttattatatgttctcatatcttccgggaaggaaa 328  Q
     |||||||| |||| |||||||||||| ||||||||| || ||||||  ||||||| | ||||| ||||| |||||||| |||||||||||    
T  24307459 atcttattcctgtttgtcttcggaaccattggcacaattgcactcaccgtggtctgatgattatttgttcgcatatctttcgggaaggaaa 24307369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 16044534 - 16044650
Alignment:
Q  303 tgttctcatatcttccgggaaggaaatgtctgtgttgatggtctaacaaccatggggcatgatttgcaagacatgatgtggttctctcttttgcctccat 402  Q
    |||||||||||||| |||||||| |||   ||||  ||||| ||| || || ||||||||||| |||||||||   |||||||| |||| |||||||| |    
T  16044534 tgttctcatatctttcgggaagggaattggtgtgcagatggcctagcagccttggggcatgatatgcaagacactttgtggttcactctgttgcctccct 16044633  T
Q  403 ctttaggggcggatttt 419  Q
    |||||||||| ||||||    
T  16044634 ctttaggggcagatttt 16044650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 33852546 - 33852429
Alignment:
Q  9 aacacggatgggtcggttagaaatttgatgtccgcttgcggtggtatttttcgtgattattgcggaacttttcttggtgggttcgcaaccaatgttggta 108  Q
    |||||||| ||||||||||||||||| ||| | |||||||||||||||||| |||||| | | || || ||| ||||||||||||||| |||| ||||      
T  33852546 aacacggacgggtcggttagaaattttatggctgcttgcggtggtattttttgtgattctcgtggcacattttttggtgggttcgcaagcaatcttggcg 33852447  T
Q  109 gagtttctgttttcgagg 126  Q
     |||||||||||||||||    
T  33852446 cagtttctgttttcgagg 33852429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 228 - 331
Target Start/End: Complemental strand, 33852384 - 33852281
Alignment:
Q  228 cataaaccatctcttattcatgttggtcttcggaaccgttggcacaactgtactcacaatggtctgtttattatatgttctcatatcttccgggaaggaa 327  Q
    ||||||||||||||||||| | || |||||||||||   ||||||||||| ||||| |||||  ||||||| || |||||||| |||||||| ||||| |    
T  33852384 cataaaccatctcttattcctatttgtcttcggaacgagtggcacaactgcactcataatggcttgtttatgatttgttctcacatcttccgagaaggga 33852285  T
Q  328 atgt 331  Q
    ||||    
T  33852284 atgt 33852281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 6298 - 6182
Alignment:
Q  303 tgttctcatatcttccgggaaggaaatgtctgtgttgatggtctaacaaccatggggcatgatttgcaagacatgatgtggttctctcttttgcctccat 402  Q
    |||||||||||||| |||||||| |||   ||||  ||||| ||| || || ||||||||||| |||||||||   |||||||| |||| |||||||| |    
T  6298 tgttctcatatctttcgggaagggaattggtgtgaagatggcctagcagccttggggcatgatatgcaagacactttgtggttcactctgttgcctccct 6199  T
Q  403 ctttaggggcggatttt 419  Q
    |||||||||||||||||    
T  6198 ctttaggggcggatttt 6182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 422
Target Start/End: Original strand, 15042779 - 15042895
Alignment:
Q  306 tctcatatcttccgggaaggaaatgtctgtgttgatggtctaacaaccatggggcatgatttgcaagacatgatgtggttctctcttttgcctccatctt 405  Q
    ||||||||||||||| ||||||||   ||||  ||||| ||| || || ||||||||||| |||||||||   |||||||| || | |||||| | ||||    
T  15042779 tctcatatcttccggaaaggaaattgttgtgccgatggcctagcagccttggggcatgatatgcaagacactttgtggttcactatgttgcctacctctt 15042878  T
Q  406 taggggcggattttgct 422  Q
    | |||||||||||||||    
T  15042879 tgggggcggattttgct 15042895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 420
Target Start/End: Original strand, 61379 - 61459
Alignment:
Q  340 atggtctaacaaccatggggcatgatttgcaagacatgatgtggttctctcttttgcctccatctttaggggcggattttg 420  Q
    |||| ||| ||||| |||||||||||||||||||||    ||||||| || | |||||||| ||||| || ||||||||||    
T  61379 atggcctagcaaccttggggcatgatttgcaagacacttcgtggttcactatgttgcctccctctttgggagcggattttg 61459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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