View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5024-Insertion-11 (Length: 469)
Name: NF5024-Insertion-11
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5024-Insertion-11 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Original strand, 50087173 - 50087634
Alignment:
| Q |
8 |
tcttcatcctaccttttgattcaatgtagttaagttcataccatagtgatgatgaagatgtattaccaaacctatgcagtgtcatccttgatgcttccac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50087173 |
tcttcatcctaccttttgattcaatgtagttaagttcataccatagtgatgatgaagatgtattaccaaacctatgcagtgtcatccttgatgcttccac |
50087272 |
T |
|
| Q |
108 |
gtgttcagtagataattgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50087273 |
gtgttcagtagataattgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggt |
50087372 |
T |
|
| Q |
208 |
atatatggtttccatttagggttaaagatttttctaccaatgagtgtgattagaaaaagtaattgttctgaagctggtaaaacaagaggacccattgttg |
307 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50087373 |
atatatggtttccatttagggttaaatatttttctaccaatgagtgtgatgagaaaaagtaattgttctgaagctggtaaaacaagaggacccattgttg |
50087472 |
T |
|
| Q |
308 |
ttatatttgatttaagtgcttcacctgcaattgccataagatctttttgaagtgatattccaactttaccttctttgtcttcttcttcaaaaacacattt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50087473 |
ttatatttgatttaagtgcttcacctgcaattgccataagatctttttgaagtgatattccaactttaccttctttgtcttcttcttcaaaaacacattt |
50087572 |
T |
|
| Q |
408 |
atatgctttatcatcacctcctttatgtgttctaacaacatgaactaatctgtattttgctc |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50087573 |
atatgctttatcatcacctcctttatgtgttctaacaacatgaactaatctgtattttgctc |
50087634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 15239491 - 15239433
Alignment:
| Q |
160 |
ccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtatatatggttt |
218 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| |||||||||||| || |||||||| |
|
|
| T |
15239491 |
ccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatcaggaatgtatggttt |
15239433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 34053190 - 34053144
Alignment:
| Q |
160 |
ccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcagg |
206 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| |||||||||||| |
|
|
| T |
34053190 |
ccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatcagg |
34053144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 469
Target Start/End: Original strand, 23271434 - 23271895
Alignment:
| Q |
8 |
tcttcatcctaccttttgattcaatgtagttaagttcataccatagtgatgatgaagatgtattaccaaacctatgcagtgtcatccttgatgcttccac |
107 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | ||||||||||| ||||| |||||||| || || || | |||||| ||||| ||||| || || || |
|
|
| T |
23271434 |
tcttcatccttccttttgattcaatatagttcaattcataccataaagatgaagaagatgtgttcccgaatcgatgcagcgtcattcttgaagcctcaac |
23271533 |
T |
|
| Q |
108 |
gtgttcagtagataattgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggt |
207 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
23271534 |
atgttcagcagatagctgaagattcttctgtaactcatcgatcacggcacgtccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcagga |
23271633 |
T |
|
| Q |
208 |
atatatggtttccatttagggttaaagatttttctaccaatgagtgtgattagaaaaagtaattgttctgaagctggtaaaacaagaggacccattgttg |
307 |
Q |
| |
|
||||| || ||| ||||||||| |||||||| | ||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||| || |||| |
|
|
| T |
23271634 |
atataaggcttcattttagggttgaagattttctttccaatgagtgtgaaaagaaagagtaattgttctgaagcaggtagaacaagaggaccaatagttg |
23271733 |
T |
|
| Q |
308 |
ttatatttgatttaagtgcttcacctgcaattgccataagatctttttgaagtgatattccaactttaccttctttgtcttcttcttcaaaaacacattt |
407 |
Q |
| |
|
||||||||||||| | |||||| ||||| || ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| ||||| || |
|
|
| T |
23271734 |
ttatatttgatttcaatgcttctcctgctatagccataagatccttttgaagtgaaattccaactttaccttctctgtcttcttcttcgaaaacgcaacg |
23271833 |
T |
|
| Q |
408 |
atatgctttatcatcacctcctttatgtgttctaacaacatgaactaatctgtattttgctc |
469 |
Q |
| |
|
|| |||||||| ||||||||||| || ||||||||||| || | ||||| |||||||||| |
|
|
| T |
23271834 |
gtaagctttatcgtcacctcctttgtgagttctaacaacttgcatcaatctatattttgctc |
23271895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 26453392 - 26453321
Alignment:
| Q |
141 |
ctcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtatata |
212 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
26453392 |
ctcatcaatcacagctctaccaccagcatgaatacaaaaatgctcaaaagcaagcttaaaatcaggtatata |
26453321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 452
Target Start/End: Complemental strand, 26453149 - 26453081
Alignment:
| Q |
384 |
gtcttcttcttcaaaaacacatttatatgctttatcatcacctcctttatgtgttctaacaacatgaac |
452 |
Q |
| |
|
||||| ||||| | ||||||| ||| |||||||||||||| | |||||||| || || ||||||||||| |
|
|
| T |
26453149 |
gtcttgttcttgataaacacacttaaatgctttatcatcagcacctttatgagtcctcacaacatgaac |
26453081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 404
Target Start/End: Original strand, 33446615 - 33446775
Alignment:
| Q |
245 |
caatgagtgtgattagaaaaagtaattgttctgaagctggtaaaacaagaggacccattgttgttatatttgatttaagtgcttcacctgcaattgccat |
344 |
Q |
| |
|
|||| ||||||| ||||| || ||||||| |||| | || | ||||||| | || || ||| ||||||||||||| | |||||| ||| | |||||||| |
|
|
| T |
33446615 |
caataagtgtgaaaagaaagagcaattgttttgaaaccggaagaacaagatggccaatagttattatatttgatttcaatgcttctcctactattgccat |
33446714 |
T |
|
| Q |
345 |
aagatcttttt-gaagtgatattccaactttaccttctttgtcttcttcttcaaaaacaca |
404 |
Q |
| |
|
||||| | | ||| ||| |||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
33446715 |
aagattactctcgaaatgaaattccaactttagcttctttgtcttcttcctcaaaaacaca |
33446775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 49041276 - 49041372
Alignment:
| Q |
123 |
ttgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtatatatggtttc |
219 |
Q |
| |
|
|||||||||||| || |||||||||| ||||| | ||||||||||| ||||| ||||||||||||||| ||| ||||| |||||||| |||||| |
|
|
| T |
49041276 |
ttgaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttc |
49041372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University