View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5024-Insertion-12 (Length: 159)

Name: NF5024-Insertion-12
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5024-Insertion-12
NF5024-Insertion-12
[»] chr2 (3 HSPs)
chr2 (61-158)||(10851526-10851623)
chr2 (8-80)||(10865057-10865129)
chr2 (13-43)||(10851496-10851526)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 7e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 10851526 - 10851623
Alignment:
Q  61 aaaccgcggcgccgcaaattagaatcagaccgaacctaactgcagatcctta--aaaagttgatgttgaactcagctctgtgtgtgttccttgaaacatg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||  |||||||||||||||||||||||    
T  10851526 aaaccgcggcgccgcaaattagaatcagaccgaacctaactgcagatccttattttaagttgatgttgaactcag--ctgtgtgtgttccttgaaacatg 10851623  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 10865057 - 10865129
Alignment:
Q  8 ggtggtggtggcggtagtggaagatattttgaagaagaaaaccactgtggctgaaaccgcggcgccgcaaatt 80  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10865057 ggtggtggcggcggtagtggaagatattttgaagaagaaaaccgctgtggctgaaaccgcggcgccgcaaatt 10865129  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 10851496 - 10851526
Alignment:
Q  13 tggtggcggtagtggaagatattttgaagaa 43  Q
    |||||||||||||||||||||||||||||||    
T  10851496 tggtggcggtagtggaagatattttgaagaa 10851526  T

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