View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5024-Insertion-15 (Length: 263)
Name: NF5024-Insertion-15
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5024-Insertion-15 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 35429193 - 35428938
Alignment:
| Q |
8 |
gaaatagttaagaggttgtaatgaaaatgaatggagaaaaaaccatccaaaaaaggattttctagtgacaggggttggattggtttaaggatgggagtca |
107 |
Q |
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| T |
35429193 |
gaaatagttaagaggttgtaatgaaaatgaatggagaaaaaaccatccaaaaaaggattttctagtgacaggggttggattggtttaaggatgggagtca |
35429094 |
T |
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| Q |
108 |
cagttaggtcaaaggaggaggactccatgaatgagtgatcaagctttgaagtaagtatgaggtaggagtagaaaagtaatttgccttttggtgatggttt |
207 |
Q |
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| T |
35429093 |
cagttaggtcaaaggaggaggactccatgaatgagtgatcaagctttgaagtaagtatgaggtagaagtagaaaagtaatttgccttttggtgatgattt |
35428994 |
T |
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| Q |
208 |
tgttatacaatgcatttataagcaaaattttggaagagtttaagcaggtttacaac |
263 |
Q |
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| T |
35428993 |
tgttatacaatgcatttataagcaaaattttggaagagtttaagcaggtttacaac |
35428938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 35420054 - 35419810
Alignment:
| Q |
8 |
gaaatagttaagaggttgtaatgaaaatgaatggagaaaaaaccatccaaaaaaggattttctagtgacaggggttggattggtttaaggatgggagtca |
107 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| |||| || |
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| T |
35420054 |
gaaatagttaagtggttgtaatgaaaatgaatggagaaaaaaccatccgaagaaggattttctggtgacaggggttggattggtttaaggattggagaca |
35419955 |
T |
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| Q |
108 |
cagttaggtcaaaggaggaggactccatgaatgagtgatcaagctttgaagtaagtatgaggtaggagtagaaaagtaatttgccttttggtgatggttt |
207 |
Q |
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| T |
35419954 |
cacttaggtcaaaggaggaggactccatgtatgagtgatcaagcttt-aagga--ttggagacacacttag--aagtaatttgccttttgctcatgattt |
35419860 |
T |
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| Q |
208 |
tgttatacaatgcatttataagcaaaattttggaagagtttaagcaggtt |
257 |
Q |
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| T |
35419859 |
tgctatacaatgcatttataggcaaaattttggaagagtttaagtaggtt |
35419810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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