View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5024-Insertion-16 (Length: 260)
Name: NF5024-Insertion-16
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5024-Insertion-16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 30400817 - 30401069
Alignment:
| Q |
8 |
tcaacccagcggtaaaagtttgaacttgtaacttcaaaagagacggagttcaaatccccttagagatagtagtaataaccattattgccatttggatatg |
107 |
Q |
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| T |
30400817 |
tcaacccagcggtaaaagtttgaacttgtaacttcaaaagagacggagttcaaatccccttagagatagtagtaataaccattattgccatttggatatg |
30400916 |
T |
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| Q |
108 |
aatgtcttttattaattgtaactcattctgtggtttgtgatcagaataaagtaaatggcaatgatgttacatatgctgataatggcaatctatctgaccg |
207 |
Q |
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| T |
30400917 |
aatgtcttgtattaattgtaactcattctgtggtttgtgatcagaataaagtaaatggcaatgatgttacatatgctgataatggcaatctatctgaccg |
30401016 |
T |
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| Q |
208 |
aaatgaggtcaaagccggctacagtgacaatactcgcagttctgttcacgctt |
260 |
Q |
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| T |
30401017 |
agatgaggttaaagccggctacagtgacaatactcgcagttctgttcacgctt |
30401069 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 10786022 - 10785981
Alignment:
| Q |
139 |
ggtttgtgatcagaataaagtaaatggcaatgatgttacata |
180 |
Q |
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| T |
10786022 |
ggtttgtgatcagaataaagtaaatggaagtgatgttacata |
10785981 |
T |
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