View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5024-Insertion-5 (Length: 746)
Name: NF5024-Insertion-5
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5024-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 8 - 524
Target Start/End: Complemental strand, 45684872 - 45684356
Alignment:
| Q |
8 |
attctttcttttatttatttagaatccttgaattatcaggatgtgacagtggcttatatcttggaattgtagatgactgtagttgaggcatatgctggtg |
107 |
Q |
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| T |
45684872 |
attctttcttttatttatttagaatccttgaattatcaggacgtgacagtggcttatatcttggaattgtagatgactgtagttgaggcatatgctggtg |
45684773 |
T |
|
| Q |
108 |
ggagggagaaattaaatccaccagatgactcgtcaaaattgcatccagaagttttatctctgataaatgaaggcatagcacaaaatacaacaggcaatat |
207 |
Q |
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| T |
45684772 |
ggagggagaaattaaatccaccagatgactcgtcaaaattgcatccagaagttttatctctgataaatgaaggcatagcacaaaatacaacaggcaatat |
45684673 |
T |
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| Q |
208 |
tttcattcctaaggtatgtcttgcctttgtacttaattttaacaactattatgttgtgatatttggcacttgattaccccaattaaggatctcgttgtag |
307 |
Q |
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| T |
45684672 |
tttcattcctaaggtatgtcttgcctttgtacttaattttaacaactattatgttgtgatatttggcacttgattaccccaattaaggatctcgttgtag |
45684573 |
T |
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| Q |
308 |
tccaacactaacagtttcttttggtcggttggatttattgtttgagaatcttgattattgtgattcttatttcatgaatgtttgcattatagaattatta |
407 |
Q |
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| T |
45684572 |
tccaacactaacagtttcttttggtcggttggatttattatttgagaatcttgattattgtgattcttatttcattaatgtttgcattatagaattatta |
45684473 |
T |
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| Q |
408 |
gcattgctatctatgactgtagcgtacttgctttggcaggatggtggagagacagagatttcaggatctcctacagagaaggcaattctatcttgggcag |
507 |
Q |
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| T |
45684472 |
gcatttctatctatgactgtagcgtacttgctttggcaggatggtggagagacagagatttcaggatctcctacagagaaggcaattctatcttgggcag |
45684373 |
T |
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| Q |
508 |
tgaaggtaccctccctg |
524 |
Q |
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| T |
45684372 |
tgaaggtaccctccctg |
45684356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 557 - 738
Target Start/End: Complemental strand, 45684323 - 45684142
Alignment:
| Q |
557 |
tctattccttgattaacgtattgatttgaagttcaaattattgaattctcgtggcagttgggaatgaattttgaacttgtcagatcaagatcaaagattc |
656 |
Q |
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| T |
45684323 |
tctattccttgattaacgtattgatttgaagttcaaattattgaattctcgtggcagttgggaatgaattttgaacttgtcagatcaagatcaaagattc |
45684224 |
T |
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| Q |
657 |
tccatgtcttcccctttaattctgagaaaaaacgaggtggtgttgctgtgaaactggtaatcccttgataaaattgtttacc |
738 |
Q |
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| T |
45684223 |
tccatgtcttcccctttaattctgagaaaaaacgaggtggtgttgctgtgaaactggtaatcccttgataaaattgtttacc |
45684142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 1441698 - 1441773
Alignment:
| Q |
120 |
taaatccaccagatgactcgtcaaaattgcatccagaagttttatctctgataaatgaaggcatagcacaaaatac |
195 |
Q |
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| T |
1441698 |
taaatccaccagatgactcttcaaagttccatccagaagcattatctctgataaatgaaagcattgcacagaatac |
1441773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 445 - 519
Target Start/End: Original strand, 1442894 - 1442968
Alignment:
| Q |
445 |
aggatggtggagagacagagatttcaggatctcctacagagaaggcaattctatcttgggcagtgaaggtaccct |
519 |
Q |
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| T |
1442894 |
aggatggtggagagctagaggtttcaggatcaccgacagagaaggcaattctttcatgggcagtcaaggtaccct |
1442968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 717
Target Start/End: Original strand, 1443053 - 1443160
Alignment:
| Q |
610 |
gcagttgggaatgaattttgaacttgtcagatcaagatcaaagattctccatgtcttcccctttaattctgagaaaaaacgaggtggtgttgctgtgaaa |
709 |
Q |
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| T |
1443053 |
gcagttgggtatgaattttgatgttatcagatctaactcaacagttcttcatgtctttccattcaattccgagaaaaaacgaggcggtgttgctctgaag |
1443152 |
T |
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| Q |
710 |
ctggtaat |
717 |
Q |
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| T |
1443153 |
ctggtaat |
1443160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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