View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5024-Insertion-6 (Length: 643)
Name: NF5024-Insertion-6
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5024-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 323
Target Start/End: Original strand, 15306700 - 15307015
Alignment:
| Q |
8 |
ccaactaccatttcaatcatcttggccagtcgctacgacaatgatattatgcatcctcgggaggttggttcatcacaaaccttgtatttttcattgtttt |
107 |
Q |
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| T |
15306700 |
ccaactaccatttcaatcatcttggccagtcgctacgacgatgacattatgcatcctcgggaggttggttcatcacaaaccttgtatttttcattgtttt |
15306799 |
T |
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| Q |
108 |
gtcttttttggtatatcaacagccttttctggctatctgatttgtgatcaatgtgcagaaatttaagaggattatgcgtggaacgcaaggtgcgcttatt |
207 |
Q |
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| T |
15306800 |
gtcttttttggtatatcaacagccttttctggctatctgatttgtgatcaatgtgcagaaatttaagaggattatgcgtggaacgcaaggtgcgcttatt |
15306899 |
T |
|
| Q |
208 |
gttgcctctagcctccaaattattgttggattcagtggcctttggtgccatgtagtgaggtccgttcttgtcacattgtgttttgttccaataattttac |
307 |
Q |
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| T |
15306900 |
gttgcctctagcctccaaattattgttggattcagtggcctttggtgccatgtagtgaggtccgttcttgtcacattgtgttttgttacaataattttac |
15306999 |
T |
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| Q |
308 |
tctcacatgtcaagtg |
323 |
Q |
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| T |
15307000 |
tctcacatgtcaagtg |
15307015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 315 - 643
Target Start/End: Original strand, 15307040 - 15307368
Alignment:
| Q |
315 |
tgtcaagtgtggttttagccaacaatcaaatatttggtcacggcttggcaaaattaatcgcgcattcaaaccgtgattttagtagaaatgataaaaaaga |
414 |
Q |
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| T |
15307040 |
tgtcaagtgtggatttagccaacaatcaaatatttggtcacggcttggcaaaattaatcgcacattcaaaccgtgattttagtagaaatgataaaaaata |
15307139 |
T |
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| Q |
415 |
gcttttacattggaatgaaaattttacattaacctttacatcagacttacgtttttgaataaacatccaaacatgattcacttaaattcgaagttcaaat |
514 |
Q |
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| T |
15307140 |
gcttttacattgggttgaaaattttacattaacctttacatcagacttgcgttttcgaataaacatccaaacatgattcacttaaattcgaagttcaaat |
15307239 |
T |
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| Q |
515 |
tcaatttttgctatttaggttcataagccctctctctgctgttcccttggttgctcttacaggctttggactttatgagttaggttttccaatggtatgt |
614 |
Q |
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| T |
15307240 |
tcaatttttgctatttaggttcataagccctctctctgctgttcccttggttgctcttacaggctttggactttatgagttaggttttccaatggtatgt |
15307339 |
T |
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| Q |
615 |
atatttacaacaacaatatctaatcctta |
643 |
Q |
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| T |
15307340 |
atatttacaacaacaatatctaatcctta |
15307368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 627
Target Start/End: Complemental strand, 26474617 - 26474518
Alignment:
| Q |
528 |
tttaggttcataagccctctctctgctgttcccttggttgctcttacaggctttggactttatgagttaggttttccaatggtatgtatatttacaacaa |
627 |
Q |
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| T |
26474617 |
tttaggttcttaagtcctctctctgctgttccattggttgctctctcaggctttggactgtatgaatttggatttcctgtggtatgcatatttgcaacaa |
26474518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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