View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5024-Insertion-7 (Length: 633)

Name: NF5024-Insertion-7
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5024-Insertion-7
NF5024-Insertion-7
[»] chr8 (21 HSPs)
chr8 (83-500)||(4275893-4276310)
chr8 (5-81)||(4276341-4276417)
chr8 (393-478)||(11870474-11870559)
chr8 (394-478)||(3606630-3606716)
chr8 (394-479)||(7127432-7127517)
chr8 (394-479)||(40588623-40588708)
chr8 (394-481)||(598130-598217)
chr8 (394-481)||(36194514-36194601)
chr8 (394-471)||(477949-478026)
chr8 (394-471)||(13415240-13415317)
chr8 (394-467)||(33642657-33642730)
chr8 (544-607)||(4272959-4273022)
chr8 (394-469)||(9496997-9497072)
chr8 (127-192)||(4273323-4273388)
chr8 (394-478)||(8451016-8451100)
chr8 (413-472)||(185504-185563)
chr8 (248-291)||(4273191-4273234)
chr8 (420-471)||(23854149-23854200)
chr8 (249-282)||(4273133-4273166)
chr8 (417-478)||(26159180-26159241)
chr8 (511-591)||(4273031-4273111)
[»] chr1 (15 HSPs)
chr1 (394-481)||(4395365-4395452)
chr1 (394-479)||(51113524-51113609)
chr1 (394-479)||(48949617-48949702)
chr1 (395-479)||(5609548-5609632)
chr1 (394-481)||(2885434-2885520)
chr1 (418-478)||(21031359-21031419)
chr1 (418-479)||(14485219-14485280)
chr1 (394-479)||(16816690-16816775)
chr1 (418-471)||(25682868-25682921)
chr1 (418-471)||(44527470-44527523)
chr1 (430-481)||(13075958-13076009)
chr1 (418-471)||(17371665-17371718)
chr1 (393-478)||(24538697-24538782)
chr1 (430-479)||(44602961-44603010)
chr1 (421-453)||(23163386-23163418)
[»] chr7 (19 HSPs)
chr7 (393-481)||(44481294-44481382)
chr7 (394-479)||(3275243-3275329)
chr7 (394-479)||(16732142-16732227)
chr7 (394-479)||(17710276-17710361)
chr7 (394-471)||(24139228-24139305)
chr7 (394-479)||(24251648-24251733)
chr7 (395-479)||(29200849-29200933)
chr7 (418-472)||(3601868-3601922)
chr7 (418-471)||(16098707-16098760)
chr7 (418-479)||(22289450-22289511)
chr7 (421-479)||(9328522-9328580)
chr7 (420-479)||(35030573-35030632)
chr7 (419-481)||(17877605-17877667)
chr7 (421-481)||(1581823-1581884)
chr7 (430-479)||(6056306-6056355)
chr7 (430-479)||(30824423-30824472)
chr7 (394-471)||(33224453-33224530)
chr7 (387-479)||(43782923-43783015)
chr7 (431-479)||(47580084-47580132)
[»] chr5 (14 HSPs)
chr5 (394-479)||(23075041-23075126)
chr5 (394-472)||(11375415-11375493)
chr5 (394-471)||(4268316-4268393)
chr5 (394-479)||(8388295-8388380)
chr5 (395-471)||(25731025-25731101)
chr5 (395-479)||(27532800-27532884)
chr5 (394-469)||(27292653-27292727)
chr5 (418-471)||(20205172-20205225)
chr5 (394-479)||(22767166-22767251)
chr5 (429-479)||(26597385-26597435)
chr5 (394-478)||(32632725-32632808)
chr5 (421-479)||(15988669-15988727)
chr5 (191-231)||(10273269-10273309)
chr5 (419-479)||(41940655-41940715)
[»] chr4 (17 HSPs)
chr4 (394-471)||(21321747-21321824)
chr4 (396-479)||(49951522-49951605)
chr4 (394-479)||(23095423-23095508)
chr4 (395-479)||(32576942-32577026)
chr4 (394-477)||(29655559-29655642)
chr4 (394-479)||(37245745-37245830)
chr4 (394-479)||(51259422-51259507)
chr4 (395-479)||(28426392-28426476)
chr4 (395-479)||(49119294-49119378)
chr4 (394-481)||(2065060-2065147)
chr4 (400-479)||(51734871-51734950)
chr4 (421-479)||(44936002-44936060)
chr4 (394-471)||(18442040-18442117)
chr4 (395-468)||(41835205-41835278)
chr4 (418-479)||(56065842-56065903)
chr4 (415-479)||(24989848-24989912)
chr4 (430-479)||(40727172-40727221)
[»] chr3 (14 HSPs)
chr3 (394-479)||(34497265-34497350)
chr3 (394-479)||(27608796-27608881)
chr3 (394-479)||(42340170-42340255)
chr3 (394-471)||(53497249-53497326)
chr3 (418-478)||(26046898-26046958)
chr3 (394-468)||(2615703-2615777)
chr3 (421-479)||(55199720-55199778)
chr3 (394-475)||(19117613-19117694)
chr3 (414-479)||(27747598-27747663)
chr3 (395-479)||(55213534-55213618)
chr3 (418-480)||(2121289-2121351)
chr3 (393-471)||(21789715-21789793)
chr3 (418-479)||(647087-647148)
chr3 (394-471)||(31341618-31341695)
[»] scaffold0003 (1 HSPs)
scaffold0003 (395-479)||(44135-44219)
[»] chr6 (7 HSPs)
chr6 (395-479)||(27443142-27443226)
chr6 (394-479)||(14680371-14680456)
chr6 (393-479)||(11731561-11731647)
chr6 (394-478)||(34104358-34104442)
chr6 (395-478)||(19690773-19690856)
chr6 (393-479)||(15605886-15605972)
chr6 (430-479)||(33792027-33792076)
[»] chr2 (13 HSPs)
chr2 (394-469)||(88778-88853)
chr2 (418-479)||(34695821-34695882)
chr2 (418-479)||(34718233-34718294)
chr2 (419-479)||(12130556-12130616)
chr2 (414-481)||(26198889-26198956)
chr2 (421-479)||(9710164-9710222)
chr2 (423-479)||(10244492-10244548)
chr2 (394-481)||(25552352-25552439)
chr2 (394-468)||(35158736-35158810)
chr2 (393-452)||(22845761-22845818)
chr2 (394-481)||(11291957-11292044)
chr2 (418-471)||(18344211-18344264)
chr2 (431-479)||(36445449-36445497)
[»] scaffold0198 (1 HSPs)
scaffold0198 (396-480)||(20366-20450)
[»] scaffold0446 (1 HSPs)
scaffold0446 (418-479)||(399-460)
[»] scaffold0922 (1 HSPs)
scaffold0922 (394-479)||(157-242)


Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-166; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 83 - 500
Target Start/End: Complemental strand, 4276310 - 4275893
Alignment:
Q  83 tatatcttaaagttaggatttgtaagcttttgcatctaaacatgttttttacattgaaatctagtgatcaattaacttttatgtaaatataaccggacat 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4276310 tatatcttaaagttaggatttgtaagcttttgcatctaaacatgttttttacattgaaatctagtgatcaattaacttttatgtaaatataaccggacat 4276211  T
Q  183 aaaactctttcagctcacttttaagtaaaattaattttacaagatcaatgtaatttatccatattattaattcacttaaaatcaattgggattattaaaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4276210 aaaactctttcagctcacttttaagtaaaattaattttacaagatcaatgtaatttatccatattattaattcacttaaaatcaattgggattattaaaa 4276111  T
Q  283 tccaaaatannnnnnnnnnnnatagaaacaaagttaattcatgtcattaacaagaaaaaggttcaatacttgt---nnnnnnnnnnngttcaatacgatc 379  Q
    |||||||||            ||||||||||||||||| ||||||||||||||||||||||||||||||||||              |||||||||||||    
T  4276110 tccaaaata---tatttttttatagaaacaaagttaatccatgtcattaacaagaaaaaggttcaatacttgtaaaaaaaaaaaaaagttcaatacgatc 4276014  T
Q  380 aatctagaaaacttggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||| || |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||    
T  4276013 aatttaaaaaacttggtgactagcctaagaaccggtcaccctaactaaattatgagcaaccatactcgcttgtcgcctaataaacttcacctcaaagttg 4275914  T
Q  480 aagttaataatcatatagttc 500  Q
    || ||||||||||||||||||    
T  4275913 aaattaataatcatatagttc 4275893  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 4276417 - 4276341
Alignment:
Q  5 acaccatcttgattttagcagccataattgatcgtgaatgtgtaaaatttattttaacatgttttctttctcttgga 81  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4276417 acaccatcttgaatttagcagccataattgatcgtgaatgtgtaaaatttattttaacatgttttctttctcttgga 4276341  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 393 - 478
Target Start/End: Complemental strand, 11870559 - 11870474
Alignment:
Q  393 tggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagtt 478  Q
    |||||| ||||| |||||| |||  ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||| |||||    
T  11870559 tggtgattagcccaagaacaggttgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagtt 11870474  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 394 - 478
Target Start/End: Original strand, 3606630 - 3606716
Alignment:
Q  394 ggtgactagcctaagaaccgg--tcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagtt 478  Q
    |||||||||||||||||| ||  |||||||||||||| ||||| ||||||| |||||||||| | ||| |||||||||||| |||||    
T  3606630 ggtgactagcctaagaacaggcgtcaccctagctaaagtatgaacaaccatattcgcttgtctcctaacaaacttcacctcgaagtt 3606716  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 7127517 - 7127432
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||| |  | ||||||||||| ||||||||| |||||||||||||| | ||| ||||||||| |||||||||    
T  7127517 ggtgactagcccaagaacagaccgccctagctaaagtatgagcaatcatgttcgcttgtctcctaacaaacttcacatcaaagttg 7127432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 40588623 - 40588708
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||| || | ||||||||||| |||| |||| |||||||||||||| | ||| |||||||||||| ||||||    
T  40588623 ggtgactagcccaagaacaggccgccctagctaaagtatgtgcaatcatgttcgcttgtctcctaacaaacttcacctcgaagttg 40588708  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 481
Target Start/End: Original strand, 598130 - 598217
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttgaa 481  Q
    |||||||||||||||||| |  | || |||||||| |||||||||||||||||||||||| | ||| ||| |||||| | ||||||||    
T  598130 ggtgactagcctaagaacagaccgccttagctaaagtatgagcaaccatgttcgcttgtctcctaacaaatttcaccacgaagttgaa 598217  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 481
Target Start/End: Original strand, 36194514 - 36194601
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttgaa 481  Q
    ||||||||||  ||||||  ||||||||||||||||||||||||||||||||  |||||| | ||| |||||||| ||| || |||||    
T  36194514 ggtgactagctcaagaacatgtcaccctagctaaactatgagcaaccatgttttcttgtctcctaacaaacttcatctcgaaattgaa 36194601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 477949 - 478026
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||| ||||| |||||| || | ||||||||||  |||||||||||||||||||||||| | ||| |||||||||||    
T  477949 ggtgattagcccaagaacaggacgccctagctaaggtatgagcaaccatgttcgcttgtctcctaacaaacttcacct 478026  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 471
Target Start/End: Complemental strand, 13415317 - 13415240
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||| |||||| |  | ||||||||||| |||||||||||||||||||||||| | ||  |||||||||||    
T  13415317 ggtgactagcccaagaacagaccgccctagctaaagtatgagcaaccatgttcgcttgtctcctagcaaacttcacct 13415240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 467
Target Start/End: Original strand, 33642657 - 33642730
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttc 467  Q
    ||||||||||| |||||| |  ||||||||||||| ||||| |||||||||||||||||| | ||| |||||||    
T  33642657 ggtgactagcccaagaacagaccaccctagctaaagtatgaacaaccatgttcgcttgtctcctaacaaacttc 33642730  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 607
Target Start/End: Complemental strand, 4273022 - 4272959
Alignment:
Q  544 gttgagacaaaatgaagttgacaagggtgcttgaatctgagtcaaagataacattgtgccaccc 607  Q
    |||||||||||||| |||||| ||| ||||||||||| || ||||||| ||||||| |||||||    
T  4273022 gttgagacaaaatggagttgataagagtgcttgaatccgactcaaagacaacattgcgccaccc 4272959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 394 - 469
Target Start/End: Complemental strand, 9497072 - 9496997
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcac 469  Q
    ||||||||| | |||||| || | ||||||||||| ||| |||||| ||||||||||||| | |||||||||||||    
T  9497072 ggtgactagtccaagaacaggccgccctagctaaagtataagcaactatgttcgcttgtctcctaataaacttcac 9496997  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 4273388 - 4273323
Alignment:
Q  127 ttttttacattgaaatctagtgatcaattaacttttatgtaaatataaccggacataaaactcttt 192  Q
    ||||||||| ||||||||| || ||||||||||||||||||| | |||||  ||||||||| ||||    
T  4273388 ttttttacaatgaaatctattgttcaattaacttttatgtaagtgtaacctaacataaaacacttt 4273323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 394 - 478
Target Start/End: Original strand, 8451016 - 8451100
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagtt 478  Q
    ||||||||||||||||   || | ||||| ||| | ||||| |||||||||||||||||| | ||| |||||||||||| |||||    
T  8451016 ggtgactagcctaagacagggccgccctaactagagtatgaacaaccatgttcgcttgtctcntaacaaacttcacctcgaagtt 8451100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 472
Target Start/End: Original strand, 185504 - 185563
Alignment:
Q  413 ggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctc 472  Q
    |||| ||||||||||||||||| |||| ||||||||||||| | ||| ||||| ||||||    
T  185504 ggtcgccctagctaaactatgaccaactatgttcgcttgtctcctaacaaactacacctc 185563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 4273234 - 4273191
Alignment:
Q  248 attaattcacttaaaatcaattgggattattaaaatccaaaata 291  Q
    |||||||||||||||||||| || |||||||||||| |||||||    
T  4273234 attaattcacttaaaatcaactgagattattaaaatgcaaaata 4273191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 471
Target Start/End: Complemental strand, 23854200 - 23854149
Alignment:
Q  420 ctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||| |||||||||||||||||||||||| | ||| ||| |||||||    
T  23854200 ctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaagttcacct 23854149  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 282
Target Start/End: Complemental strand, 4273166 - 4273133
Alignment:
Q  249 ttaattcacttaaaatcaattgggattattaaaa 282  Q
    |||||||||||||||||||| |||||||||||||    
T  4273166 ttaattcacttaaaatcaatcgggattattaaaa 4273133  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 478
Target Start/End: Complemental strand, 26159241 - 26159180
Alignment:
Q  417 accctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagtt 478  Q
    |||||||||||||||||||| ||||  |||||||||| |   ||||||||||||| ||||||    
T  26159241 accctagctaaactatgagctaccaaattcgcttgtctccgtataaacttcacctaaaagtt 26159180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 591
Target Start/End: Complemental strand, 4273111 - 4273031
Alignment:
Q  511 aaactattacataaaactcaagcactccagtaagttgagacaaaatgaagttgacaagggtgcttgaatctgagtcaaaga 591  Q
    |||| |||||||||||||||  |||||   ||||||||||||||||| | |||||| | ||||||| ||| || |||||||    
T  4273111 aaaccattacataaaactcagacactctgctaagttgagacaaaatggaattgacatgagtgcttgcatcggactcaaaga 4273031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 394 - 481
Target Start/End: Complemental strand, 4395452 - 4395365
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttgaa 481  Q
    ||||||||||| |||||| || | ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||    
T  4395452 ggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcaaagttgaa 4395365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 51113609 - 51113524
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||| || |||||| |||| |||||||||| |||||||||||||||||||||| || | ||| |||||||||||| ||||||    
T  51113609 ggtgactaacccaagaacaggtcgccctagctaagctatgagcaaccatgttcgcttctctcctaacaaacttcacctcgaagttg 51113524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 48949617 - 48949702
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||| ||   |||||||||| ||||||| ||||||||||||||||| | ||| |||||||||||| ||||||    
T  48949617 ggtgactagcccaagaacaggctgccctagctaagctatgagtaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 48949702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 5609632 - 5609548
Alignment:
Q  395 gtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| ||||||  | | ||||||||||  |||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  5609632 gtgactagcccaagaacatgccgccctagctaatgtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 5609548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 481
Target Start/End: Complemental strand, 2885520 - 2885434
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttgaa 481  Q
    ||||||||||| |||||| |||| ||||||||||| ||||||||| |||||||||||||  | ||| |||||||||| | ||||||||    
T  2885520 ggtgactagcccaagaacaggtcgccctagctaaagtatgagcaa-catgttcgcttgtatcctaacaaacttcaccacgaagttgaa 2885434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 478
Target Start/End: Complemental strand, 21031419 - 21031359
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagtt 478  Q
    |||| |||||||||||||||| |||||||||||||| | ||| |||||||||||| |||||    
T  21031419 ccctggctaaactatgagcaatcatgttcgcttgtctcctaaaaaacttcacctcgaagtt 21031359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 14485280 - 14485219
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||||||| ||||||| ||||| | |||| |||||||||| |||||||    
T  14485280 ccctagctaaagtatgagcaactatgttcgtttgtctcctaatgaacttcaccttaaagttg 14485219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 16816690 - 16816775
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||   ||| ||||| ||||| ||||||||||||||||| ||| || | ||| ||||||||||| |||||||    
T  16816690 ggtgactagcccaagaataagtcgccctaactaaagtatgagcaaccatgttctcttctctcctaacaaacttcaccttaaagttg 16816775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 25682921 - 25682868
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||| |||||||||||||| ||||||||| | ||| |||||||||||    
T  25682921 ccctagctaaagtatgagcaaccatgctcgcttgtctcctaacaaacttcacct 25682868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 44527523 - 44527470
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    |||||| |||| |||||||| ||||||||||||||| | |||||||||||||||    
T  44527523 ccctagttaaagtatgagcagccatgttcgcttgtctcctaataaacttcacct 44527470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 481
Target Start/End: Original strand, 13075958 - 13076009
Alignment:
Q  430 tatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttgaa 481  Q
    |||||||| |||||||||||||  || ||| |||||||||||||||||||||    
T  13075958 tatgagcagccatgttcgcttgatgcctaacaaacttcacctcaaagttgaa 13076009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 17371718 - 17371665
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||  ||||||| ||||| |||||||||| | |||||||||||||||    
T  17371718 ccctagctaaggtatgagcgaccatattcgcttgtctcctaataaacttcacct 17371665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 478
Target Start/End: Complemental strand, 24538782 - 24538697
Alignment:
Q  393 tggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagtt 478  Q
    |||||||||||| ||||||  ||   |||||| ||| ||||||||| |||||||||||||  | |||  |||||||||||||||||    
T  24538782 tggtgactagccgaagaacatgttgtcctagcaaaagtatgagcaatcatgttcgcttgtttcctaacgaacttcacctcaaagtt 24538697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 44603010 - 44602961
Alignment:
Q  430 tatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||| |||||||||||||||| | ||| |||||||||||| ||||||    
T  44603010 tatgagccaccatgttcgcttgtcccctaacaaacttcacctcgaagttg 44602961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 453
Target Start/End: Complemental strand, 23163418 - 23163386
Alignment:
Q  421 tagctaaactatgagcaaccatgttcgcttgtc 453  Q
    |||||||| ||||||||||||||||||||||||    
T  23163418 tagctaaagtatgagcaaccatgttcgcttgtc 23163386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 393 - 481
Target Start/End: Complemental strand, 44481382 - 44481294
Alignment:
Q  393 tggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttgaa 481  Q
    |||||||||||| |||||| || | ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||| ||||||||    
T  44481382 tggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttgaa 44481294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 3275329 - 3275243
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaa-ctatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||||||||||| || | |||||||| || |||||| |||||||||||||||||| ||||| |||||||||||| ||||||    
T  3275329 ggtgactagcctaagaacaggccgccctagcttaagctatgatcaaccatgttcgcttgtctcttaacaaacttcacctcgaagttg 3275243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 16732227 - 16732142
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||| |  | ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  16732227 ggtgactagcccaagaacagtccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 16732142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 17710361 - 17710276
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||| |  | ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  17710361 ggtgactagcccaagaacagtccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 17710276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 471
Target Start/End: Complemental strand, 24139305 - 24139228
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||| |||||| || | ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||    
T  24139305 ggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacct 24139228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 24251733 - 24251648
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||  |||||| || | ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  24251733 ggtgactagctcaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 24251648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 29200849 - 29200933
Alignment:
Q  395 gtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| |||||| |  | ||||||||||| |||||||||||||||||| ||||| | ||| |||||||||||| ||||||    
T  29200849 gtgactagcccaagaacagaccgccctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttg 29200933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 472
Target Start/End: Complemental strand, 3601922 - 3601868
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctc 472  Q
    |||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||    
T  3601922 ccctagctaaactatgagcaaccatgttcgattgtctcctaacaaacttcacctc 3601868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 16098760 - 16098707
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||    
T  16098760 ccctagctaaaatatgagcaaccatgttcgcttgtctcataacaaacttcacct 16098707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 22289511 - 22289450
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| ||||||||||||||||||||||||| | ||| |||| ||||||| ||||||    
T  22289511 ccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacatcacctcgaagttg 22289450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 479
Target Start/End: Original strand, 9328522 - 9328580
Alignment:
Q  421 tagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||| |||||||||||||||||||||||| | ||| ||||||||| || ||||||    
T  9328522 tagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacatcgaagttg 9328580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 479
Target Start/End: Original strand, 35030573 - 35030632
Alignment:
Q  420 ctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||| |||||||||  ||||||||||||| |||   |||||||||||||||||||    
T  35030573 ctagctaaagtatgagcaattatgttcgcttgtctcttcgcaaacttcacctcaaagttg 35030632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 419 - 481
Target Start/End: Complemental strand, 17877667 - 17877605
Alignment:
Q  419 cctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttgaa 481  Q
    |||| ||||| |||||||||||||| ||||||||| | ||| |||||||||||| || |||||    
T  17877667 cctacctaaagtatgagcaaccatggtcgcttgtctcataacaaacttcacctcgaaattgaa 17877605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 481
Target Start/End: Complemental strand, 1581884 - 1581823
Alignment:
Q  421 tagctaaactatgagcaacc-atgttcgcttgtcgcttaataaacttcacctcaaagttgaa 481  Q
    ||||||||||||||||| || ||||||||||||| | ||| ||||||||| || ||||||||    
T  1581884 tagctaaactatgagcaccccatgttcgcttgtctcctaacaaacttcacatcgaagttgaa 1581823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Original strand, 6056306 - 6056355
Alignment:
Q  430 tatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||| |||||||||||||||| |||  || |||||||||||||||||||    
T  6056306 tatgaacaaccatgttcgcttgacgcccaacaaacttcacctcaaagttg 6056355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Original strand, 30824423 - 30824472
Alignment:
Q  430 tatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||||||||||||| || | ||| ||||||||| |||||||||    
T  30824423 tatgagcaaccatgttcgcttatctcctaacaaacttcacttcaaagttg 30824472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 33224453 - 33224530
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||| |||||| ||   |||||| |||  ||||||||| |||||||||||||| | ||| |||||||||||    
T  33224453 ggtgactagcccaagaacaggctgccctagataagttatgagcaatcatgttcgcttgtctcctaacaaacttcacct 33224530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 479
Target Start/End: Original strand, 43782923 - 43783015
Alignment:
Q  387 aaaacttggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||| |||||||||||| | ||||||| | |||| ||||||   |||||||| || | ||||||||||  ||||||||| ||||| ||||||    
T  43782923 aaaacatggtgactagcccatgaaccggccgccctcgctaaagagtgagcaactatatccgcttgtcgccgaataaactttacctcgaagttg 43783015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 479
Target Start/End: Complemental strand, 47580132 - 47580084
Alignment:
Q  431 atgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||||||||||||||| | ||  |||||||||||| ||||||    
T  47580132 atgagcaaccatgttcgcttgtctcctaccaaacttcacctcgaagttg 47580084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 23075126 - 23075041
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| ||||||  |||  ||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||||    
T  23075126 ggtgactagcccaagaacatgtcgtcctagctaaactatgagcaaccatgttcgcttgtctcctaacaaacttcaccttaaagttg 23075041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 11375415 - 11375493
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctc 472  Q
    ||||| ||||| |||||| || | ||||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||    
T  11375415 ggtgaatagcccaagaacaggccgccctagctaaagtatgagcaactatgttcgcttgtctcttaacaaacttcacctc 11375493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 471
Target Start/End: Complemental strand, 4268393 - 4268316
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||| ||||||  | | |||||| |||| |||||||||||||||||||||||| | |||||||||||||||    
T  4268393 ggtgactagcccaagaacatgccgccctagataaagtatgagcaaccatgttcgcttgtctcctaataaacttcacct 4268316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 8388380 - 8388295
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| ||||||    |||||||||||| ||||||||||||||||||||||||| | ||| ||||||| |||| ||||||    
T  8388380 ggtgactagcccaagaacaaaccaccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcccctcgaagttg 8388295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 471
Target Start/End: Complemental strand, 25731101 - 25731025
Alignment:
Q  395 gtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    |||||||||| |||||| || | ||||||||||| ||||||||||||||||||||| || | ||| |||||||||||    
T  25731101 gtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttatctcctaacaaacttcacct 25731025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 27532800 - 27532884
Alignment:
Q  395 gtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||| ||||| ||||||  ||||||||||||||| ||| || ||||||||||||||||| | ||| |||||||||||| ||||||    
T  27532800 gtgattagcccaagaacatgtcaccctagctaaagtataagtaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 27532884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 469
Target Start/End: Complemental strand, 27292727 - 27292653
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcac 469  Q
    ||||||||||| ||||||  ||| ||||||||||| |||||||||||||||||||||||| | | |||||||||||    
T  27292727 ggtgactagcccaagaacatgtc-ccctagctaaagtatgagcaaccatgttcgcttgtctcctgataaacttcac 27292653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 20205225 - 20205172
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||    
T  20205225 ccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacct 20205172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 22767166 - 22767251
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| ||||||  | | || |||||||| |||||||||||||||||| ||||| | ||| |||||||||||| ||||||    
T  22767166 ggtgactagcccaagaacatgccgccttagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttg 22767251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 479
Target Start/End: Original strand, 26597385 - 26597435
Alignment:
Q  429 ctatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  26597385 ctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 26597435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 478
Target Start/End: Complemental strand, 32632808 - 32632725
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagtt 478  Q
    ||||||||||| |||||| || | || |||||||| |||| ||||| ||||||||||||| | |||||||| ||||||| |||||    
T  32632808 ggtgactagcccaagaacaggccgcc-tagctaaagtatgggcaactatgttcgcttgtctcataataaacgtcacctcgaagtt 32632725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 421 - 479
Target Start/End: Original strand, 15988669 - 15988727
Alignment:
Q  421 tagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||| |||||||||||||||  ||||||| | ||| |||||||||||| ||||||    
T  15988669 tagctaaagtatgagcaaccatgtctgcttgtctcctaacaaacttcacctcgaagttg 15988727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 10273309 - 10273269
Alignment:
Q  191 ttcagctcacttttaagtaaaattaattttacaagatcaat 231  Q
    |||| ||||||| ||||||||||||||||||||| ||||||    
T  10273309 ttcaactcacttataagtaaaattaattttacaaaatcaat 10273269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 479
Target Start/End: Original strand, 41940655 - 41940715
Alignment:
Q  419 cctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| ||| ||||| ||||||| |||||| | ||| |||||||||||| ||||||    
T  41940655 cctagctaaagtattagcaatcatgttctcttgtctcctaacaaacttcacctcgaagttg 41940715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 394 - 471
Target Start/End: Complemental strand, 21321824 - 21321747
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||| |||||| || | ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  21321824 ggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgatcgcttgtctcttaataaacttcacct 21321747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 396 - 479
Target Start/End: Complemental strand, 49951605 - 49951522
Alignment:
Q  396 tgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||| |||||| || | ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  49951605 tgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 49951522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 23095508 - 23095423
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||| || ||||||||||||| |||||| || |||||||||||||| | ||| |||||||||||| ||||||    
T  23095508 ggtgactagcccaagaacaggccaccctagctaaaatatgagtaatcatgttcgcttgtctcctaacaaacttcacctcgaagttg 23095423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 32576942 - 32577026
Alignment:
Q  395 gtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| |||||| ||   ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  32576942 gtgactagcccaagaacaggctgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 32577026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 394 - 477
Target Start/End: Original strand, 29655559 - 29655642
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagt 477  Q
    ||||| ||||| |||||| |||| ||||||||||| |||||||||||||||||||||||| | ||| |||||||| ||| ||||    
T  29655559 ggtgattagccaaagaacaggtcgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagt 29655642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 37245745 - 37245830
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||| |  | ||||||||||| |||||||||||||||||| ||||| | ||| |||||||||||| ||||||    
T  37245745 ggtgactagcccaagaacagaccgccctagctaaagtatgagcaaccatgttcgattgtctcctaacaaacttcacctcgaagttg 37245830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 51259422 - 51259507
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| || ||  || | |||||||||| ||||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  51259422 ggtgactagcccaaaaataggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 51259507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 28426476 - 28426392
Alignment:
Q  395 gtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| |||| | || |||| |||||||| |||||||||||||||||||||||| | ||| ||||||| |||| ||||||    
T  28426476 gtgactagcccaagagcaggccaccttagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttctcctcgaagttg 28426392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 49119294 - 49119378
Alignment:
Q  395 gtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| |||| | || |||| |||||||| |||||||||||||||||||||||| | ||| ||||||| |||| ||||||    
T  49119294 gtgactagcccaagagcaggccaccttagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttctcctcgaagttg 49119378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 481
Target Start/End: Complemental strand, 2065147 - 2065060
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttgaa 481  Q
    ||||||||||| ||||||  |  |||||||||||| |||||||||||||||||| ||||| | ||| |||||||||||  ||||||||    
T  2065147 ggtgactagcccaagaacatgctaccctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcaccttgaagttgaa 2065060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 479
Target Start/End: Original strand, 51734871 - 51734950
Alignment:
Q  400 tagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||| |||||| || | ||||||||||| ||||||||||||||||| |||||| | ||| |||||||||||| ||||||    
T  51734871 tagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcacttgtcacctaacaaacttcacctcgaagttg 51734950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 421 - 479
Target Start/End: Original strand, 44936002 - 44936060
Alignment:
Q  421 tagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||||||||||||||||||||||||||   ||| |||||||||||| ||||||    
T  44936002 tagctaaactatgagcaaccatgttcgcttgtctgctaacaaacttcacctcgaagttg 44936060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 18442040 - 18442117
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||| |||||| || | ||||||||||| ||||||||||||| |||| ||||| | ||| |||||||||||    
T  18442040 ggtgactagcccaagaacaggccgccctagctaaaatatgagcaaccattttcgtttgtctcataacaaacttcacct 18442117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 468
Target Start/End: Original strand, 41835205 - 41835278
Alignment:
Q  395 gtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttca 468  Q
    |||||||||| |||||| || | ||||| |||||||||||| ||||||||||||||||| | ||| ||||||||    
T  41835205 gtgactagcccaagaacaggccgccctatctaaactatgaggaaccatgttcgcttgtctcctaacaaacttca 41835278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 56065903 - 56065842
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| ||||||||||||||||||||||||| | ||| |||||||| ||| ||||||    
T  56065903 ccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagttg 56065842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 24989848 - 24989912
Alignment:
Q  415 tcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||| |||| ||| ||||||| |||||| ||||| ||||| |||||||||||| ||||||    
T  24989848 tcaccctagataaagtataagcaaccgtgttcgtttgtctcttaacaaacttcacctcgaagttg 24989912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 40727221 - 40727172
Alignment:
Q  430 tatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| ||| ||||||| ||| ||| |||||||||||||||||||    
T  40727221 tatgagcaactatgctcgcttgacgcctaacaaacttcacctcaaagttg 40727172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 34497265 - 34497350
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||| || | |||||||||| ||||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  34497265 ggtgactagcccaagaacaggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 34497350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 27608796 - 27608881
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||| || | | |||||||| ||||||||||||||||||||||||| | ||| |||||||| ||| ||||||    
T  27608796 ggtgactagcccaagaacaggccgctctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcagctcgaagttg 27608881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 42340170 - 42340255
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||| || | ||||| ||||| | |||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  42340170 ggtgactagccaaagaacaggccgccctatctaaagtgtgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 42340255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 471
Target Start/End: Complemental strand, 53497326 - 53497249
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||| |||||| ||   ||||||||||| |||||||| ||||||||||||||| | |||||||||||||||    
T  53497326 ggtgactagcccaagaacaggctgccctagctaaagtatgagcagccatgttcgcttgtctcctaataaacttcacct 53497249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 418 - 478
Target Start/End: Complemental strand, 26046958 - 26046898
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagtt 478  Q
    ||||||||||| |||||||||||||||||||||||| | ||| |||| |||||||||||||    
T  26046958 ccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacgtcacctcaaagtt 26046898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 468
Target Start/End: Complemental strand, 2615777 - 2615703
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttca 468  Q
    ||||||||||| |||||| |||| |||||| |||| |||||||||||||||||| ||||| | ||| ||||||||    
T  2615777 ggtgactagcccaagaacaggtcgccctagttaaagtatgagcaaccatgttcgtttgtctcctaacaaacttca 2615703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 421 - 479
Target Start/End: Complemental strand, 55199778 - 55199720
Alignment:
Q  421 tagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||| ||||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  55199778 tagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 55199720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 475
Target Start/End: Original strand, 19117613 - 19117694
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaa 475  Q
    |||||||||||||||||| || |  ||||||||| ||||||||||| |||||||  |||| | ||| |||||||||||||||    
T  19117613 ggtgactagcctaagaacaggccgacctagctaagctatgagcaactatgttcgactgtctcctaacaaacttcacctcaaa 19117694  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 479
Target Start/End: Original strand, 27747598 - 27747663
Alignment:
Q  414 gtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||| ||||| |||| |||||||||| ||||||||||||| ||||| |||||||||||| ||||||    
T  27747598 gtcaacctagataaagtatgagcaactatgttcgcttgtctcttaacaaacttcacctcgaagttg 27747663  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 55213618 - 55213534
Alignment:
Q  395 gtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| ||||||||| | |||||| |||| ||| ||||||||||||||||| || | ||| ||| |||||||| ||||||    
T  55213618 gtgactagcccaagaaccggccgccctagttaaagtataagcaaccatgttcgcttttctcctaacaaatttcacctcgaagttg 55213534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 2121351 - 2121289
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttga 480  Q
    ||||| ||||| |||||||||||||||||||||||| | ||| |||||| ||||| |||||||    
T  2121351 ccctaactaaagtatgagcaaccatgttcgcttgtctcctaacaaactttacctcgaagttga 2121289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 471
Target Start/End: Original strand, 21789715 - 21789793
Alignment:
Q  393 tggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    |||||||||||  | ||||||| | | |||||||||   ||||||||||||| ||||||||||| ||||||||||||||    
T  21789715 tggtgactagcaaatgaaccggccgctctagctaaagagtgagcaaccatgtccgcttgtcgctgaataaacttcacct 21789793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 647087 - 647148
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||| ||||| |||||||||||||||||| ||||| | ||| ||| |||||||| ||||||    
T  647087 ccctaactaaagtatgagcaaccatgttcgtttgtctcctaacaaatttcacctcgaagttg 647148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 31341618 - 31341695
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||| |||||||||   ||||| ||||  |||||||||||||||  | ||||| | |||||||||||||||    
T  31341618 ggtgactagcccaagaaccggctgccctaactaaggtatgagcaaccatgtcagtttgtctcctaataaacttcacct 31341695  T

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Target: scaffold0003 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 44135 - 44219
Alignment:
Q  395 gtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| |||||| |  | |||||||||| |||||||||||||||||||||| || | ||| |||||||||||||||||||    
T  44135 gtgactagcccaagaacagaccgccctagctaagctatgagcaaccatgttcgcttctctcctaacaaacttcacctcaaagttg 44219  T

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Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 27443226 - 27443142
Alignment:
Q  395 gtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| |||||| |  | |||||||||| |||||||||||||||||||||| || | ||| |||||||||||||||||||    
T  27443226 gtgactagcccaagaacagaccgccctagctaagctatgagcaaccatgttcgcttctctcctaacaaacttcacctcaaagttg 27443142  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 14680456 - 14680371
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||||| ||||| || | |||||| |||| ||||||||||||||||||| |||| | ||| |||||||||||| ||||||    
T  14680456 ggtgactagcctgagaacaggccgccctagttaaagtatgagcaaccatgttcgcatgtctcctaacaaacttcacctcgaagttg 14680371  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 479
Target Start/End: Original strand, 11731561 - 11731647
Alignment:
Q  393 tggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||||| |||| | ||   ||||||||||| |||||||||||||||||||||| | | ||| |||||||||||| ||||||    
T  11731561 tggtgactagcccaagagcaggctgccctagctaaagtatgagcaaccatgttcgcttgcctcctaacaaacttcacctcgaagttg 11731647  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 478
Target Start/End: Original strand, 34104358 - 34104442
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagtt 478  Q
    ||||||||||| ||||||  | | || ||||||| ||||||||||||||||| ||||||| | ||| |||||||||||| |||||    
T  34104358 ggtgactagcccaagaacatgccgccatagctaagctatgagcaaccatgtttgcttgtctcctaacaaacttcacctcgaagtt 34104442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 395 - 478
Target Start/End: Original strand, 19690773 - 19690856
Alignment:
Q  395 gtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagtt 478  Q
    |||||||||| |||||| |||| |||| || |||  |||||||| |||||||||||||  | ||| ||||||||||||||||||    
T  19690773 gtgactagcccaagaacaggtcgcccttgcaaaaacatgagcaatcatgttcgcttgtttcctaacaaacttcacctcaaagtt 19690856  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 479
Target Start/End: Original strand, 15605886 - 15605972
Alignment:
Q  393 tggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||||| |||||   | | |||||||||||  |||||||||||||||||||||||   ||| ||| |||||||| ||||||    
T  15605886 tggtgactagcccaagaataagccgccctagctaaagcatgagcaaccatgttcgcttgtctgctaacaaaattcacctcgaagttg 15605972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 33792076 - 33792027
Alignment:
Q  430 tatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||| |||||||||| | ||| ||||||||||||| |||||||||||||    
T  33792076 tatgaacaaccatgtttgtttgacgcttaataaactgcacctcaaagttg 33792027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 394 - 469
Target Start/End: Complemental strand, 88853 - 88778
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcac 469  Q
    ||||||||||| |||||| || | ||||||||||| |||||||||||||||||||||||| |  ||||||||||||    
T  88853 ggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctccaaataaacttcac 88778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 34695821 - 34695882
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  34695821 ccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 34695882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 34718233 - 34718294
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| |||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  34718233 ccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 34718294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 419 - 479
Target Start/End: Original strand, 12130556 - 12130616
Alignment:
Q  419 cctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| |||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  12130556 cctagctaaagtatgagcaaccatgttcgcttgtctcataacaaacttcacctcgaagttg 12130616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 481
Target Start/End: Complemental strand, 26198956 - 26198889
Alignment:
Q  414 gtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttgaa 481  Q
    ||||||||||||||| |||||| |||||||||| |||||  | ||| |||||||||||||||||||||    
T  26198956 gtcaccctagctaaagtatgagaaaccatgttcacttgttacctaacaaacttcacctcaaagttgaa 26198889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 421 - 479
Target Start/End: Complemental strand, 9710222 - 9710164
Alignment:
Q  421 tagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||| |||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  9710222 tagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 9710164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 479
Target Start/End: Original strand, 10244492 - 10244548
Alignment:
Q  423 gctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||| ||||||||| ||||||| |||| |||||||||||||||||||| ||||||    
T  10244492 gctaaagtatgagcaatcatgttcacttgccgcttaataaacttcacctcgaagttg 10244548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 394 - 481
Target Start/End: Complemental strand, 25552439 - 25552352
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttgaa 481  Q
    |||||||| ||||||||| ||||  |||| ||||| ||||||||||||||||| |||||| ||||| ||| |||| || ||| |||||    
T  25552439 ggtgactaacctaagaacaggtcttcctaactaaagtatgagcaaccatgttcacttgtctcttaacaaatttcatcttaaaattgaa 25552352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 468
Target Start/End: Original strand, 35158736 - 35158810
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttca 468  Q
    |||| |||||| |||||| || | ||||||| |||||||||||||| ||||||||||||| | ||| ||||||||    
T  35158736 ggtgcctagcccaagaacaggccgccctagcgaaactatgagcaactatgttcgcttgtctcataacaaacttca 35158810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 452
Target Start/End: Complemental strand, 22845818 - 22845761
Alignment:
Q  393 tggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgt 452  Q
    ||||||||||| ||||||| |||| ||||||||||| |||||||||  ||||||||||||    
T  22845818 tggtgactagcttaagaacaggtcgccctagctaaagtatgagcaa--atgttcgcttgt 22845761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 481
Target Start/End: Original strand, 11291957 - 11292044
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttgaa 481  Q
    ||||||||||| ||||||  | |  |||||||||| ||||||||| |||||||||| ||| | ||| |||||||||||  ||||||||    
T  11291957 ggtgactagcccaagaacaagccgacctagctaaagtatgagcaaacatgttcgctcgtctcctaacaaacttcaccttgaagttgaa 11292044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 18344211 - 18344264
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacct 471  Q
    ||||||||||| ||||||||||||||||||||| || | ||| ||| |||||||    
T  18344211 ccctagctaaagtatgagcaaccatgttcgcttatctcctaacaaatttcacct 18344264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 479
Target Start/End: Original strand, 36445449 - 36445497
Alignment:
Q  431 atgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||| ||||||| |||| | ||||||||||||||||| ||||||    
T  36445449 atgagcaactatgttcgtttgttgtttaataaacttcacctcgaagttg 36445497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 396 - 480
Target Start/End: Complemental strand, 20450 - 20366
Alignment:
Q  396 tgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttga 480  Q
    ||||||||| |||||| |||  ||||||||||| |||||| || ||| |||||||||| | ||| ||||||||||||||||||||    
T  20450 tgactagcccaagaacaggttgccctagctaaagtatgagtaatcatattcgcttgtctcctaacaaacttcacctcaaagttga 20366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 460 - 399
Alignment:
Q  418 ccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    |||||||||| ||||||||||||||||||||||||| | ||| |||||||| ||| ||||||    
T  460 ccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagttg 399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 157 - 242
Alignment:
Q  394 ggtgactagcctaagaaccggtcaccctagctaaactatgagcaaccatgttcgcttgtcgcttaataaacttcacctcaaagttg 479  Q
    ||||||||||| ||||||  |||  ||||| |||| ||||||||||| |||||||||||| | ||| ||||||||| || ||||||    
T  157 ggtgactagcccaagaacaagtcgtcctagttaaagtatgagcaaccgtgttcgcttgtctcctaacaaacttcacatcgaagttg 242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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