View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5024-Insertion-9 (Length: 545)
Name: NF5024-Insertion-9
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5024-Insertion-9 |
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Alignment Details
Target: chr6 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Complemental strand, 4616113 - 4615607
Alignment:
| Q |
8 |
ttttattcattgaatgaattccaagaaggtaaaaagctctgtaacataccaagcaatgtttaaaagctgggatcagagatcgaaccagtgaaactttctg |
107 |
Q |
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| T |
4616113 |
ttttattcattgaatgaattccaagaaggaaaaaagctctgtaacataccaagcaatgtttaaaagctgggatcagagatcgaaccagtgaaactttctg |
4616014 |
T |
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| Q |
108 |
caccagagatccccggttcttaaacatttctcaaagcacattggatattgaaaatgaattttcttgttaaggaaaataaggaattactattaagagtgaa |
207 |
Q |
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| T |
4616013 |
caccagagatccccggttcttaaacatttctcaaagcacattggatattgaaaatgaattttcttgttaaggaaaataaggaattactattaagagtgaa |
4615914 |
T |
|
| Q |
208 |
gttccaattcagtccctcacaatttctcgctgaccaatttaatccctcacaaaaaataaatccaaattattccctgggattttcatacaacggacaaatt |
307 |
Q |
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| T |
4615913 |
gctccaattcagtccctcacaatttctcgctgaccaatttaatccctcacaaaaaataaatccaaattattccttgggattttcatacaacggacaaatt |
4615814 |
T |
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| Q |
308 |
agttactctaatacaaagagttacgttctaatttctcatcaatattaaaatagaaggactattttgggtttattttttgttagagactaaattagcccac |
407 |
Q |
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| T |
4615813 |
agttactctaatacaaagagttacgttctaatttctcgtcaatattaaaatagaaggactattttgggtttattttttgttagagactaaattggcccac |
4615714 |
T |
|
| Q |
408 |
aaa-nnnnnnngaaggaccgaattgagtcttcattctaaagtgacaataataaccattttacgaaataccttttgtcccgagctgatacctcatataccc |
506 |
Q |
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| T |
4615713 |
aaattttttgtgaaggaccgaattgagtcttcattctaaagtgacaataataaccattttatgaaataccttttgtcccgagctgatacctcatataccc |
4615614 |
T |
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| Q |
507 |
aaaaatt |
513 |
Q |
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| T |
4615613 |
aaaaatt |
4615607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 471
Target Start/End: Complemental strand, 36167670 - 36167642
Alignment:
| Q |
443 |
taaagtgacaataataaccattttacgaa |
471 |
Q |
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| T |
36167670 |
taaagtgacaataataaccattttacgaa |
36167642 |
T |
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