View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5024_high_5 (Length: 201)

Name: NF5024_high_5
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5024_high_5
NF5024_high_5
[»] chr3 (6 HSPs)
chr3 (3-121)||(37886670-37886788)
chr3 (19-123)||(55444512-55444617)
chr3 (14-140)||(40613714-40613841)
chr3 (19-115)||(55439897-55439993)
chr3 (41-91)||(17057157-17057207)
chr3 (14-107)||(3002074-3002167)
[»] chr4 (2 HSPs)
chr4 (1-140)||(31414761-31414902)
chr4 (1-93)||(32158813-32158906)
[»] scaffold0330 (2 HSPs)
scaffold0330 (1-121)||(13176-13296)
scaffold0330 (4-121)||(12534-12652)
[»] chr2 (5 HSPs)
chr2 (9-121)||(34173794-34173906)
chr2 (1-103)||(34172437-34172538)
chr2 (1-87)||(39063819-39063905)
chr2 (1-76)||(39064568-39064643)
chr2 (19-123)||(33513941-33514046)
[»] chr5 (6 HSPs)
chr5 (20-121)||(19778695-19778797)
chr5 (39-106)||(1222309-1222376)
chr5 (41-91)||(43378626-43378676)
chr5 (41-91)||(43379449-43379499)
chr5 (41-106)||(1217846-1217911)
chr5 (19-59)||(37839994-37840034)
[»] chr7 (2 HSPs)
chr7 (14-140)||(41347118-41347245)
chr7 (1-93)||(18947300-18947392)
[»] chr1 (1 HSPs)
chr1 (19-104)||(1765194-1765279)
[»] chr8 (1 HSPs)
chr8 (1-90)||(38444430-38444519)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 37886670 - 37886788
Alignment:
Q  3 catttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacac 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||| ||||| ||||||||| ||| |||||| |||    
T  37886670 catttaggtttcctcaatttattccttttcactttattgatgtgtgacatgtggcaaatgtaaagtcaagggttgggattaaaagctttggcatgagcac 37886769  T
Q  103 tttttaaagaaaaataaaa 121  Q
    ||||||| |||||||||||    
T  37886770 tttttaatgaaaaataaaa 37886788  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 55444617 - 55444512
Alignment:
Q  19 atttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactt-tttaaagaaaaat 117  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||| || || ||||| ||  | || ||| ||||||| ||||| |||||||    
T  55444617 atttatcccttttcactttattgatgtgtgacatgtggcaaatgtaaaaacaagggctgggattagaatctctatcataaacacttgtttaatgaaaaat 55444518  T
Q  118 aaaaca 123  Q
    ||||||    
T  55444517 aaaaca 55444512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 40613841 - 40613714
Alignment:
Q  14 cctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactt-tttaaaga 112  Q
    |||| |||||| ||| |||| ||||| ||||| |||||||||||| || | ||| ||| || ||| ||||| ||||||| ||| ||||||| ||||| ||    
T  40613841 cctccatttatccctgttcattttgtagatgtctgacatgtggcacatattaaatcaagggctgaaattaacaggtttaacataaacacttgtttaatga 40613742  T
Q  113 aaaataaaacacgctatcttcttctttc 140  Q
    |||||||||||| || | ||||||||||    
T  40613741 aaaataaaacacactcttttcttctttc 40613714  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 55439897 - 55439993
Alignment:
Q  19 atttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactttttaaagaaaa 115  Q
    |||||| |||||||||||| |||||||||||||| |||||| | || || ||| ||||||||||  ||| |||| ||| | ||||||| || |||||    
T  55439897 atttatcccttttcactttattgatgtgtgacatatggcaagtatacaatcaagggttgagattgcaagatttaacataagcacttttcaatgaaaa 55439993  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 17057157 - 17057207
Alignment:
Q  41 gatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttt 91  Q
    ||||||||||| ||||||||  | ||| |||||||||||||||||||||||    
T  17057157 gatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaaggttt 17057207  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 3002074 - 3002167
Alignment:
Q  14 cctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacacttttt 107  Q
    |||| |||||| |||||||| ||  ||||||||||| || |||||||||| ||| ||| || |  ||||||||| | |||||| ||||||||||    
T  3002074 cctccatttatcccttttcatttcattgatgtgtgatatttggcaaatgttaaatcaagggctaggattaaaagctctagcataaacacttttt 3002167  T

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Target: chr4 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 31414902 - 31414761
Alignment:
Q  1 tccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaac 100  Q
    |||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| || ||||||||||||||| ||| |||||| |    
T  31414902 tccatttaagtttcctcaatttattccttttcactttattgatatgtgacatgtggcaaatgtaaaaagaagggttgagattaaaagctttggcatgagc 31414803  T
Q  101 acttttt-aaagaaaaataaaaca-cgctatcttcttctttc 140  Q
    ||||||| || ||||| ||||||| |||| ||||||||||||    
T  31414802 actttttcaatgaaaagtaaaacaccgctctcttcttctttc 31414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 32158813 - 32158906
Alignment:
Q  1 tccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatg-taaaaacaacggttgagattaaaaggtttag 93  Q
    |||||||||||||||||||||||  || ||||| |   | |||||||||||||| ||||| | ||||| ||| ||  |||||||||||||||||    
T  32158813 tccatttaggtttcctcaatttaccccatttcattccttggatgtgtgacatgtagcaaaagttaaaaccaagggcagagattaaaaggtttag 32158906  T

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Target: scaffold0330 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 13296 - 13176
Alignment:
Q  1 tccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||| ||||| ||||||||| ||| |||| | |    
T  13296 tccatttaggtttcctcaatttattccttttcactttattgatgtgtgacatgtggcaaatttaaagtcaagggttgggattaaaagctttggcattagc 13197  T
Q  101 actttttaaagaaaaataaaa 121  Q
    ||||||||| |||||||||||    
T  13196 actttttaatgaaaaataaaa 13176  T

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Target: scaffold0330; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 12534 - 12652
Alignment:
Q  4 atttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacac- 102  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||| |||     
T  12534 atttaagtttcctcaatttattccttttcactttattgttgtgtgacatgtggcaaatgtaaaaacaagggttgggattaaaagctttggcatgagcact 12633  T
Q  103 tttttaaagaaaaataaaa 121  Q
    ||||||| |||||||||||    
T  12634 tttttaatgaaaaataaaa 12652  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 34173906 - 34173794
Alignment:
Q  9 ggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacacttttta 108  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| | | || |||||||||||||    
T  34173906 ggttttctcaatttattccttttcattttattgatgtgtgacatgtgacaaatgtaaaaacaatggttgagattaaaagctatggcgtgaacacttttta 34173807  T
Q  109 aagaaaaataaaa 121  Q
    |  ||||||||||    
T  34173806 ataaaaaataaaa 34173794  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 34172437 - 34172538
Alignment:
Q  1 tccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaac 100  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| || ||||||||||||||| ||| ||||||||    
T  34172437 tccatttaggttttctcaatttattccttttcattttattgatgtgtgacatgtgacaaatgtaaaaataagggttgagattaaaagcttt-gcatgaac 34172535  T
Q  101 act 103  Q
    |||    
T  34172536 act 34172538  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 39063819 - 39063905
Alignment:
Q  1 tccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaag 87  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  39063819 tccatttaggtttcctcaatttattcattttcactttattgatgtatgacatgtggcaaatgtaaaaacaatggttgggattaaaag 39063905  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39064643 - 39064568
Alignment:
Q  1 tccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggtt 76  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  39064643 tccatttatgtttcctcaatttattccttttcattttattgatgtgtgacatgtggcaaatgtaaaaacaagggtt 39064568  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 33514046 - 33513941
Alignment:
Q  19 atttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactttt-taaagaaaaat 117  Q
    |||||| |||||||||||  ||||||| |||||| || |||||| |||| ||| ||||||||||||||| | |||||| | ||||||| | | |||||||    
T  33514046 atttatcccttttcacttcattgatgtatgacatttgacaaatgaaaaatcaagggttgagattaaaagttgtagcataatcacttttctgatgaaaaat 33513947  T
Q  118 aaaaca 123  Q
    ||||||    
T  33513946 aaaaca 33513941  T

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Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 19778797 - 19778695
Alignment:
Q  20 tttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactt-tttaaagaaaaata 118  Q
    |||||||||||| ||||| ||||||| |||||||||||||||||||||| || ||||||||||||||| | |||||| ||||||| | ||| ||||||||    
T  19778797 tttattcctttttactttattgatgtttgacatgtggcaaatgtaaaaataagggttgagattaaaagctctagcataaacacttgtgtaatgaaaaata 19778698  T
Q  119 aaa 121  Q
    |||    
T  19778697 aaa 19778695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 1222376 - 1222309
Alignment:
Q  39 ttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactttt 106  Q
    |||||||||||||  |||||||||||||| ||| ||||| ||||||||| |||| ||| | |||||||    
T  1222376 ttgatgtgtgacacttggcaaatgtaaaatcaaaggttgggattaaaagctttaacataagcactttt 1222309  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 43378626 - 43378676
Alignment:
Q  41 gatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttt 91  Q
    ||||||||||| ||||||||  ||||| ||| |||||||||||||||||||    
T  43378626 gatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaaggttt 43378676  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 43379499 - 43379449
Alignment:
Q  41 gatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttt 91  Q
    ||||||||||||||||||||  ||||| ||| ||||| |||||||||||||    
T  43379499 gatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaaggttt 43379449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 1217846 - 1217911
Alignment:
Q  41 gatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactttt 106  Q
    |||||||||||| |||||||||| ||| ||| ||||  |||||||||||||| ||| | |||||||    
T  1217846 gatgtgtgacatttggcaaatgtgaaatcaagggtttggattaaaaggtttaacataagcactttt 1217911  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 37839994 - 37840034
Alignment:
Q  19 atttattccttttcactttgttgatgtgtgacatgtggcaa 59  Q
    |||||| |||||||||||| |||| ||||||||||||||||    
T  37839994 atttatcccttttcactttattgacgtgtgacatgtggcaa 37840034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 41347118 - 41347245
Alignment:
Q  14 cctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactt-tttaaaga 112  Q
    |||| |||||| ||| || | ||||| ||||| ||||||||||||||| | ||| ||| || |||||||||||  |||| ||| ||||||| ||||| ||    
T  41347118 cctccatttatccctgtttattttgtagatgtctgacatgtggcaaatattaaatcaagggctgagattaaaaaatttaacataaacacttgtttaatga 41347217  T
Q  113 aaaataaaacacgctatcttcttctttc 140  Q
    |||||||||||| || | ||||||||||    
T  41347218 aaaataaaacacactcttttcttctttc 41347245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 18947300 - 18947392
Alignment:
Q  1 tccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttag 93  Q
    ||||||||||   |||| |||||| || ||||||||  | |||||  |||||||||||||| ||||| ||| ||||||||||| |||| ||||    
T  18947300 tccatttagggagcctccatttataccatttcacttcatagatgttggacatgtggcaaatataaaaccaatggttgagattagaaggcttag 18947392  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 1765279 - 1765194
Alignment:
Q  19 atttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactt 104  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||  || || |  ||||||||| | |||||| |||||||    
T  1765279 atttattccttttcactttattgatgtgtagcatgtggcaaatgtaaaactaagggctaggattaaaagctctagcataaacactt 1765194  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 38444519 - 38444430
Alignment:
Q  1 tccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtt 90  Q
    ||||||||| |||||||||||||  |  |||||  || | |||||||||||||||| ||| || ||| ||| ||||| ||||||||||||    
T  38444519 tccatttagatttcctcaatttacccaatttcaagttatagatgtgtgacatgtggaaaaagttaaatcaagggttgtgattaaaaggtt 38444430  T

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