View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5024_low_1 (Length: 265)
Name: NF5024_low_1
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5024_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 15306705 - 15306467
Alignment:
| Q |
17 |
agttggcacaaaggtaaaggatcctccaataactgctggtagtcgagtcccaaacaatgtttgtattaatgtgtttataccagccacaaacaaatgattt |
116 |
Q |
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| T |
15306705 |
agttggcacaaaggtaaaggatcctccgataactgctggtagtcgagtcccaaacaatgtttgtattaatgtgtttataccagccacaaacaaatgattt |
15306606 |
T |
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| Q |
117 |
tgaatcagcattgctttttcttcctattgaaacacaaattaagctatttgttaaaagaaaaaacctatataacatcatcaaaaatcaannnnnnnnnnnn |
216 |
Q |
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| T |
15306605 |
tgaatcagcattgctttttcttcctattgaaacacaaattaagctatttgttaaaagagaaaaactatataacaccatcaaaaatcaattttcctttttt |
15306506 |
T |
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| Q |
217 |
cttacacatcaagacttacatttcctcctcccatctgtg |
255 |
Q |
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| T |
15306505 |
cttacacatcaagacttacatttcctcctcccatctgtg |
15306467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 26475072 - 26475204
Alignment:
| Q |
18 |
gttggcacaaaggtaaaggatcctccaataactgctggtagtcgagtcccaaacaatgtttgtattaatgtgtttataccagccacaaacaaatgatttt |
117 |
Q |
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||||||||||| || |||||||||||||||| || ||||| ||||| ||||| |||||| | |||||||| || ||||||||||| | || | | |
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| T |
26475072 |
gttggcacaaaagtgtaggatcctccaataaccgcaggtagacgagttccaaatgttgtttggaaaaatgtgttaattccagccacaaatagtagagtct |
26475171 |
T |
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| Q |
118 |
gaatcagcattgctttttcttcctattgaaaca |
150 |
Q |
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| T |
26475172 |
gaatcacttttgctttctcttcctattgaaaca |
26475204 |
T |
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