View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5024_low_4 (Length: 224)

Name: NF5024_low_4
Description: NF5024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5024_low_4
NF5024_low_4
[»] chr2 (6 HSPs)
chr2 (115-205)||(1233680-1233770)
chr2 (15-69)||(1233816-1233870)
chr2 (116-172)||(35029861-35029917)
chr2 (116-172)||(34229074-34229130)
chr2 (16-61)||(41282855-41282900)
chr2 (116-172)||(34228160-34228216)
[»] chr3 (5 HSPs)
chr3 (115-172)||(40809592-40809649)
chr3 (115-172)||(40810284-40810341)
chr3 (116-172)||(35903702-35903758)
chr3 (115-172)||(8922897-8922954)
chr3 (115-172)||(41325835-41325892)
[»] chr4 (3 HSPs)
chr4 (116-171)||(44516799-44516854)
chr4 (116-172)||(32159521-32159577)
chr4 (116-172)||(39311371-39311427)
[»] chr8 (5 HSPs)
chr8 (123-172)||(8814483-8814532)
chr8 (121-178)||(17943018-17943075)
chr8 (115-172)||(42578722-42578779)
chr8 (116-168)||(11519367-11519419)
chr8 (116-172)||(38444464-38444520)
[»] chr6 (2 HSPs)
chr6 (121-161)||(34260140-34260180)
chr6 (121-161)||(34262190-34262230)
[»] scaffold0402 (1 HSPs)
scaffold0402 (121-157)||(10884-10920)
[»] chr1 (1 HSPs)
chr1 (116-172)||(7338798-7338854)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 1233770 - 1233680
Alignment:
Q  115 gccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggagaaaaatagaccggtaaattggaggggggattaa 205  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1233770 gccacgtgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagaaaaatagactggtaaattggaggggggattaa 1233680  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 1233870 - 1233816
Alignment:
Q  15 gagaagaagaagaaaggagactggtgtgttgtttcagatacaagagaagaactag 69  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  1233870 gagaagaagaagaaaggagactggtgtgttgcttcggatacaagagaagaactag 1233816  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 35029861 - 35029917
Alignment:
Q  116 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    |||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||    
T  35029861 ccacatgtcacacatctatgacttgaaatggggtaaattgaggaaacctaaatggag 35029917  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 34229074 - 34229130
Alignment:
Q  116 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    |||| ||||||||||| ||||||| ||||| |||||||||||||| | |||||||||    
T  34229074 ccacatgtcacacatctatgacttaaaatggggtaaattgaggaatcttaaatggag 34229130  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 41282855 - 41282900
Alignment:
Q  16 agaagaagaagaaaggagactggtgtgttgtttcagatacaagaga 61  Q
    |||||||||||||||| | | || ||||||||||||||||||||||    
T  41282855 agaagaagaagaaaggtggcaggcgtgttgtttcagatacaagaga 41282900  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 34228216 - 34228160
Alignment:
Q  116 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    |||| ||||||||||| || |||| ||||| |||||||||||||| | |||||||||    
T  34228216 ccacatgtcacacatctataacttgaaatggggtaaattgaggaatcttaaatggag 34228160  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 40809649 - 40809592
Alignment:
Q  115 gccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    ||||||||||||||||||||||||| |||||   ||||||||||||||| ||||||||    
T  40809649 gccacgtgtcacacatccatgacttaaaatggaataaattgaggaaacccaaatggag 40809592  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 40810284 - 40810341
Alignment:
Q  115 gccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    |||| |||||||||||||||||||| ||||| | |||||||||||||| |||||||||    
T  40810284 gccatgtgtcacacatccatgacttaaaatgggataaattgaggaaacttaaatggag 40810341  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 35903758 - 35903702
Alignment:
Q  116 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    |||| |||||||||||||| |||| ||||| |||||||||||  |||||||||||||    
T  35903758 ccacatgtcacacatccataacttgaaatggggtaaattgagagaacctaaatggag 35903702  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 8922954 - 8922897
Alignment:
Q  115 gccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    ||||| ||||||||||||||||    ||||| ||||||||||| ||||||||||||||    
T  8922954 gccacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggag 8922897  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 41325892 - 41325835
Alignment:
Q  115 gccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    ||||| ||||||||||||||||    ||||| ||||||||||| ||||||||||||||    
T  41325892 gccacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggag 41325835  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 44516854 - 44516799
Alignment:
Q  116 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatgga 171  Q
    |||| ||||||||||| || |||| |||||||||||||| ||||||||||||||||    
T  44516854 ccacatgtcacacatctatcacttaaaatgaggtaaattaaggaaacctaaatgga 44516799  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 32159521 - 32159577
Alignment:
Q  116 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    |||| ||||||||||||| |   | ||||| ||||||||||||||||||||||||||    
T  32159521 ccacatgtcacacatccaaggaatgaaatggggtaaattgaggaaacctaaatggag 32159577  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 39311371 - 39311427
Alignment:
Q  116 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    |||| ||||||||||| ||||||| ||||| ||||||||||| || | |||||||||    
T  39311371 ccacatgtcacacatctatgacttaaaatggggtaaattgagaaatcttaaatggag 39311427  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 8814483 - 8814532
Alignment:
Q  123 tcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    |||||||||||||||||  |||| ||||||||||||||||| ||||||||    
T  8814483 tcacacatccatgacttgtaatggggtaaattgaggaaaccaaaatggag 8814532  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 17943018 - 17943075
Alignment:
Q  121 tgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggagaaaaat 178  Q
    ||||||||||||||| ||||||||| ||||||||||| |||   |||||||| |||||    
T  17943018 tgtcacacatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaaat 17943075  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 42578779 - 42578722
Alignment:
Q  115 gccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    ||||| ||||| ||||| ||||||| ||||| ||||||||||| |||| |||||||||    
T  42578779 gccacatgtcatacatctatgacttgaaatggggtaaattgagcaaacataaatggag 42578722  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 11519419 - 11519367
Alignment:
Q  116 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaat 168  Q
    |||| ||||||||||| |||| || ||||| |||||||||| |||||||||||    
T  11519419 ccacatgtcacacatctatgatttgaaatggggtaaattgaagaaacctaaat 11519367  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 38444464 - 38444520
Alignment:
Q  116 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    |||| ||||||||||| || |||| ||||  ||||||||||||||| ||||||||||    
T  38444464 ccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggag 38444520  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 34260180 - 34260140
Alignment:
Q  121 tgtcacacatccatgacttcaaatgaggtaaattgaggaaa 161  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  34260180 tgtcacacatccatgacttgaaatggggtaaattgaggaaa 34260140  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 34262190 - 34262230
Alignment:
Q  121 tgtcacacatccatgacttcaaatgaggtaaattgaggaaa 161  Q
    |||||||||||||| |||| ||||| |||||||||||||||    
T  34262190 tgtcacacatccataacttaaaatggggtaaattgaggaaa 34262230  T

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Target: scaffold0402 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 10920 - 10884
Alignment:
Q  121 tgtcacacatccatgacttcaaatgaggtaaattgag 157  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  10920 tgtcacacatccatgtcttcaaatggggtaaattgag 10884  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 7338798 - 7338854
Alignment:
Q  116 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 172  Q
    |||| ||| ||||||| ||||||| |||||  ||||||||||||||| |||||||||    
T  7338798 ccacatgttacacatctatgacttgaaatggagtaaattgaggaaacataaatggag 7338854  T

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