View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5025-Insertion-1 (Length: 868)

Name: NF5025-Insertion-1
Description: NF5025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5025-Insertion-1
NF5025-Insertion-1
[»] chr6 (16 HSPs)
chr6 (367-861)||(1118350-1118846)
chr6 (5-368)||(27765318-27765681)
chr6 (474-685)||(10374773-10374988)
chr6 (524-623)||(22885213-22885314)
chr6 (474-684)||(14448499-14448710)
chr6 (769-854)||(10374608-10374693)
chr6 (524-623)||(22903171-22903272)
chr6 (783-854)||(2944285-2944356)
chr6 (512-685)||(3904681-3904855)
chr6 (524-685)||(22917953-22918117)
chr6 (541-641)||(10289067-10289170)
chr6 (769-840)||(26948016-26948088)
chr6 (569-682)||(2401287-2401401)
chr6 (497-685)||(34208832-34209020)
chr6 (277-368)||(24848312-24848403)
chr6 (518-572)||(32668630-32668684)
[»] chr5 (8 HSPs)
chr5 (5-370)||(12870153-12870518)
chr5 (226-369)||(43469538-43469681)
chr5 (497-690)||(24394586-24394781)
chr5 (606-695)||(27598709-27598797)
chr5 (549-685)||(22652327-22652464)
chr5 (769-836)||(19006407-19006475)
chr5 (541-576)||(16842517-16842552)
chr5 (798-854)||(27598887-27598944)
[»] chr7 (15 HSPs)
chr7 (226-369)||(10646041-10646184)
chr7 (474-695)||(11918335-11918556)
chr7 (483-685)||(5299087-5299290)
chr7 (769-852)||(6629198-6629282)
chr7 (586-695)||(6629348-6629457)
chr7 (769-843)||(11918192-11918266)
chr7 (769-826)||(15708402-15708459)
chr7 (524-637)||(12505688-12505803)
chr7 (541-574)||(30226084-30226117)
chr7 (525-603)||(12484259-12484339)
chr7 (541-600)||(2076505-2076563)
chr7 (541-600)||(2082924-2082982)
chr7 (517-618)||(9732817-9732920)
chr7 (541-600)||(14984671-14984729)
chr7 (541-600)||(15414282-15414340)
[»] chr1 (9 HSPs)
chr1 (226-369)||(46566568-46566711)
chr1 (226-368)||(12606569-12606711)
chr1 (246-368)||(49195411-49195533)
chr1 (226-368)||(40908316-40908458)
chr1 (524-681)||(21433929-21434088)
chr1 (772-854)||(4650152-4650234)
chr1 (524-685)||(25123321-25123484)
chr1 (781-854)||(24285157-24285231)
chr1 (541-574)||(49086718-49086751)
[»] chr4 (12 HSPs)
chr4 (246-368)||(31525455-31525577)
chr4 (226-369)||(23538151-23538294)
chr4 (543-690)||(39668431-39668577)
chr4 (483-695)||(11865121-11865333)
chr4 (769-846)||(39668295-39668372)
chr4 (510-572)||(24608673-24608736)
chr4 (524-576)||(12607263-12607316)
chr4 (769-846)||(12492839-12492918)
chr4 (277-368)||(8652037-8652128)
chr4 (277-368)||(8663844-8663935)
chr4 (769-819)||(50908074-50908124)
chr4 (541-574)||(13268845-13268878)
[»] chr3 (9 HSPs)
chr3 (246-368)||(33365925-33366047)
chr3 (524-695)||(43902040-43902211)
chr3 (541-682)||(19583927-19584069)
chr3 (781-846)||(43901894-43901959)
chr3 (523-594)||(10082380-10082452)
chr3 (541-603)||(8531391-8531453)
chr3 (523-618)||(10189280-10189377)
chr3 (606-695)||(2165931-2166020)
chr3 (524-584)||(27716326-27716387)
[»] chr8 (3 HSPs)
chr8 (474-854)||(38802105-38802483)
chr8 (560-690)||(14423719-14423849)
chr8 (541-574)||(24482317-24482350)
[»] chr2 (21 HSPs)
chr2 (517-854)||(15324990-15325325)
chr2 (226-369)||(3081202-3081345)
chr2 (541-695)||(21713356-21713511)
chr2 (508-692)||(31067492-31067679)
chr2 (541-695)||(17395555-17395709)
chr2 (546-690)||(8944737-8944881)
chr2 (300-369)||(10983161-10983229)
chr2 (769-854)||(17840999-17841084)
chr2 (475-695)||(18593508-18593728)
chr2 (497-685)||(17841159-17841348)
chr2 (474-584)||(40588739-40588850)
chr2 (772-854)||(31067336-31067419)
chr2 (783-846)||(45550281-45550344)
chr2 (769-854)||(18593798-18593883)
chr2 (769-840)||(8162753-8162825)
chr2 (544-603)||(20186609-20186668)
chr2 (769-832)||(21713230-21713293)
chr2 (781-846)||(25867403-25867469)
chr2 (649-695)||(28645672-28645718)
chr2 (769-826)||(20476437-20476494)
chr2 (509-573)||(28645793-28645858)
[»] scaffold0238 (2 HSPs)
scaffold0238 (279-369)||(5099-5189)
scaffold0238 (226-286)||(5323-5383)
[»] scaffold0054 (1 HSPs)
scaffold0054 (524-623)||(8730-8831)
[»] scaffold0070 (1 HSPs)
scaffold0070 (769-826)||(5995-6052)
[»] scaffold0157 (1 HSPs)
scaffold0157 (769-846)||(27559-27638)
[»] scaffold0062 (1 HSPs)
scaffold0062 (541-574)||(2205-2238)


Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 367 - 861
Target Start/End: Original strand, 1118350 - 1118846
Alignment:
Q  367 attcatgataaaaacaaagataattgaaattctggcaggtagtaaaatatgtcgaacatgatgtcaaaacatacggaatgtcgagcacaatgtaattaac 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1118350 attcatgataaaaacaaagataattgaaattctggcaggtagtaaaatatgtcgaacatgatgtcaaaacatacggaatgtcgagcacaatgtaattaac 1118449  T
Q  467 aacttagcaacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaaccagttcggtgcaacgtcacctacat 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||    
T  1118450 aacttagcaacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaattagttaggtgcaacgtcacctacat 1118549  T
Q  567 ctgggggcattcaagctatgaaggaaatcgactataaaatattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactac 666  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  1118550 ctgggggcattcaagctatgaaggaaatcgactataaaatattagtttgaagtcctacataaactacctccggtttacagctttcgcacctaatcactac 1118649  T
Q  667 ccgtgatatttctatctaaaacacacctaaaatatgagaca------ccccccacctcctctcaaatcactcactagtgatttcaacnnnnnnnnnnnnt 760  Q
    |||||||||||||||||||||||||||| ||||||||||||      |||||||||||||||| |||||||||||||||||||||||            |    
T  1118650 ccgtgatatttctatctaaaacacacct-aaatatgagacaccccccccccccacctcctctc-aatcactcactagtgatttcaac--aaaataaaaat 1118745  T
Q  761 cgaaacaaagacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaattacaactcaactatcagtcaaactctaccatga 860  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  1118746 caaaacgaagacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtccaactctaccatga 1118845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 5 - 368
Target Start/End: Complemental strand, 27765681 - 27765318
Alignment:
Q  5 acacatgaggtacttcatcgctctctcataaagaagaaggagttagaggaggaaagaatttggcattgaaaacataagagtgaatgggaatagcaaaaaa 104  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27765681 acacgtgaggtacttcatcgctctctcagaaagaagaaggagttagaggaggaaagagtttggcattgaaaacataagagtgaatgggaatagcaaaaaa 27765582  T
Q  105 gttgagagattggggagatagagagacacctcgggtaatacaaattcatttgaaaactgaatggacattgaaggttcattg------gtgggtagttggc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||    
T  27765581 gttgagagattggggagatagagagacacctcgggtaatacaaattcatttgaaaactgaatggacattgaaggttcattggtgttagtgggtagttggc 27765482  T
Q  199 agatagggtcagcacttaatgcaagcttgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggatta 298  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| || |||||||  |||||||||||||||||||||||||||||||| ||||||    
T  27765481 agatagggtcagcacttaatgcaaatttgaaaggtcatcagatcaaagactaagatttatggtgtggttggcagttgagattagcattaattatggatta 27765382  T
Q  299 gggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    |||||||||||||| ||||||||||||||      |||||||||||||||| ||||| ||||||||||||    
T  27765381 gggagggaaaaacaaaagtgattagggca------ccagctcatcaagtctagctttaataataaaggat 27765318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 474 - 685
Target Start/End: Complemental strand, 10374988 - 10374773
Alignment:
Q  474 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggg 572  Q
    |||||||| |||||| |||||| ||||||||||||||||||| |||||| |||||| |||| | ||| ||||||  |||||||||||||||||| |||||    
T  10374988 caacacaaataacaattaacaacttaaagtaaattgcagaaagtaaatgacacaaggtattagttaacccagtttagtgcaacgtcacctacatttgggg 10374889  T
Q  573 gc-attcaagctatgaaggaaatcgactataa-aatattagtttgaagtcctacgtaaactacctccggtttac-aggtttcgcacctaatcactacccg 669  Q
    || |||||||| | |||||||| | ||||||| | |||||||||||||||||| |||||  || || | |||||  |  |||||| | |||||||||||     
T  10374888 gcaattcaagccaggaaggaaaaccactataatagtattagtttgaagtcctatgtaaataacatctgatttacttgccttcgcatcaaatcactacccc 10374789  T
Q  670 tgatatttctatctaa 685  Q
    ||||||||||||||||    
T  10374788 tgatatttctatctaa 10374773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 524 - 623
Target Start/End: Complemental strand, 22885314 - 22885213
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||| | ||||||||||||||||    
T  22885314 cacaagatatttgttaacccagtacggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatctactataatagtattagtttgaagtcc 22885215  T
Q  622 ta 623  Q
    ||    
T  22885214 ta 22885213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 474 - 684
Target Start/End: Complemental strand, 14448710 - 14448499
Alignment:
Q  474 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggg 572  Q
    |||||||| || |||||||||| ||||||  || | | ||||  ||| || |||||||||||| ||||| |||||||||||||||||| || ||||  ||    
T  14448710 caacacaaatagcaaataacaaattaaagataaataccgaaagaaaaaggtacaagttatttgttaacctagttcggtgcaacgtcacttagatcttagg 14448611  T
Q  573 gcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtg 671  Q
    ||  ||||||   |||||||||| ||||| | | ||||||||||||| ||| | ||||| ||||||||| |||    ||||||||||||| |||||| ||    
T  14448610 gctatcaagcctagaaggaaatccactattatagtattagtttgaag-cctgcataaacaacctccggtctactaaattcgcacctaatctctacccatg 14448512  T
Q  672 atatttctatcta 684  Q
    |||||||||||||    
T  14448511 atatttctatcta 14448499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 10374693 - 10374608
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaattacaactcaactatcagtcaaactcta 854  Q
    |||||||||||||  ||||||||| |   || |||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  10374693 agacacactccaatcaacagaatctattcttacttaaaagcttatgagtgattcacaattacaactcaactatcagtccaactcta 10374608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 524 - 623
Target Start/End: Complemental strand, 22903272 - 22903171
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||||||| ||| ||||| | |||| ||||| ||||||| | ||||||||||||||||    
T  22903272 cacaagatatttgttaacccagtgcggtgcaacgtcacctacatctggggacatccaagccaggaagaaaatctactataatagtattagtttgaagtcc 22903173  T
Q  622 ta 623  Q
    ||    
T  22903172 ta 22903171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 783 - 854
Target Start/End: Original strand, 2944285 - 2944356
Alignment:
Q  783 aaacagaatccacctttgcttaaaagcttacgagtgactcacaattacaactcaactatcagtcaaactcta 854  Q
    |||||||||||||  || |||||||||||| || ||| |||||||||||||||||||||||||| |||||||    
T  2944285 aaacagaatccactcttacttaaaagcttaagattgattcacaattacaactcaactatcagtccaactcta 2944356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 685
Target Start/End: Complemental strand, 3904855 - 3904681
Alignment:
Q  512 gaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tatt 609  Q
    |||| |||| |||||||| |||||| ||||| ||||||||| |||||| ||||| | |||||  |  ||||| | |||||||||| ||||||| | ||||    
T  3904855 gaaaataaaaggcacaagatatttgttaacctagttcggtgaaacgtcccctacgtttggggctac-caagccaggaaggaaatcaactataatagtatt 3904757  T
Q  610 agtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaa 685  Q
    | ||  |||||||| || ||| ||||||||||||  |  ||| ||| |||||||||||||||||||||||||||||    
T  3904756 aattgaaagtcctatgtgaacaacctccggtttatcgccttctcacttaatcactacccgtgatatttctatctaa 3904681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 524 - 685
Target Start/End: Complemental strand, 22918117 - 22917953
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||||| |||  |||||||||||||||||||||| || ||| ||||| | |||||||||| |  |||| | ||||||||||||||||    
T  22918117 cacaagatatttgttaacccagtatggtgcaacgtcacctacatctgaggacatccaagccaggaaggaaatctataataatagtattagtttgaagtcc 22918018  T
Q  622 tacgtaaactacctccggtttacag-gtttcgcacctaatcactacccgtgatatttctatctaa 685  Q
    || || ||| || |  |||| || |  | || |||||||||||| ||||||||||||||||||||    
T  22918017 tatgtgaacaacatttggttcactgcctatctcacctaatcacttcccgtgatatttctatctaa 22917953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 541 - 641
Target Start/End: Original strand, 10289067 - 10289170
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa---aatattagtttgaagtcctacgtaaactacctcc 637  Q
    |||||||||||||| ||||| || ||||||||||||  | | || |||||||||| |||||||    ||||||||||||||||||| || ||| ||||||    
T  10289067 ccagttcggtgcaatgtcacttatatctgggggcatctacgttaggaaggaaatccactataatagtatattagtttgaagtcctatgtgaacaacctcc 10289166  T
Q  638 ggtt 641  Q
    ||||    
T  10289167 ggtt 10289170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Complemental strand, 26948088 - 26948016
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaa-ttacaactcaacta 840  Q
    ||||||||||| ||||||| |||||||  |||||| ||||||||||||||| |||||| ||||||| ||||||    
T  26948088 agacacactccgagaaacataatccactcttgctttaaagcttacgagtgattcacaacttacaacacaacta 26948016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 682
Target Start/End: Original strand, 2401287 - 2401401
Alignment:
Q  569 gggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacc 667  Q
    |||||||| ||||| | |||||||||  ||||||| | |||||||||||| ||||| || ||  ||||| |||| ||    ||| |||||||||||||||    
T  2401287 gggggcatccaagccaggaaggaaattcactataatagtattagtttgaaatcctatgtgaaaaacctctggttcactaccttctcacctaatcactacc 2401386  T
Q  668 cgtgatatttctatc 682  Q
    |||||||||||||||    
T  2401387 cgtgatatttctatc 2401401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 685
Target Start/End: Original strand, 34208832 - 34209020
Alignment:
Q  497 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 595  Q
    |||||||||| ||||| ||  ||||  |||||  |||||||||||| |||||||||||| || |||||||||||  ||||| | ||| |||||||||||     
T  34208832 ttaaagtaaaatgcaggaaggaaataacacaaagtatttgctaacccagttcggtgcaatgttacctacatctgatggcatccgagccatgaaggaaata 34208931  T
Q  596 gactataaaatattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaa 685  Q
     |||| | | ||||| ||  |||||||| || ||| |||||||||| || |  ||| ||| | |||||||| | || |||||||||||||    
T  34208932 cacta-atagtattaattcaaagtcctaggtgaacaacctccggttcactgtcttctcacttcatcactactcatggtatttctatctaa 34209020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 24848312 - 24848403
Alignment:
Q  277 gattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    ||||| |||||||||||| |||||||| |||||  ||||  |||||||||||   ||| ||||   ||||||| ||||||||||||||||||    
T  24848312 gattaacattaattacggtttagggagcgaaaatgagaatagattagggcaaacatgctagcttggcaagtctagcttttataataaaggat 24848403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 518 - 572
Target Start/End: Original strand, 32668630 - 32668684
Alignment:
Q  518 aaatggcacaagttatttgctaaccagttcggtgcaacgtcacctacatctgggg 572  Q
    ||||| |||||||| ||||  | |||||||||||||| |||||||||||||||||    
T  32668630 aaatgacacaagttgtttgtaacccagttcggtgcaaagtcacctacatctgggg 32668684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 5 - 370
Target Start/End: Complemental strand, 12870518 - 12870153
Alignment:
Q  5 acacatgaggtacttcatcgctctctcataaagaagaaggagttagaggaggaaagaatttggcattgaaaacataagagtgaatgggaatagcaaaaaa 104  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12870518 acacatgaggtacttcatcgctctctcagaaaaaagaaggagttagaggaggaaagagtttggcattgaaaacataagagtgaatgggaatagcaaaaaa 12870419  T
Q  105 gttgagagattggggagatagagagacacctcgggtaatacaaattcatttgaaaactgaatggacattgaaggttcattggtgggtagttggcagatag 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12870418 gttgagagattggggagatagagagacacctcgggtaatacgaattcatttgaaaactgaatggacattgaaggttcattagtgggtagttggcagatag 12870319  T
Q  205 ggtcagcacttaatgcaagcttgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagg 304  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||  |||||  ||||||||||||||||||||||||||    
T  12870318 ggtcagcacttaatgcaagcttgaaaagtcatcagatcaaaggctgagatttagggtgtggttggttgttgaagttagcattaattacggattagggagg 12870219  T
Q  305 gaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggattc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12870218 gaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttatagtaaaggattc 12870153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 43469538 - 43469681
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||| || |||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||| |||||||||||  ||||||||||||||    
T  43469538 tgaaaggtcttccgatcaaaggctgagatttagggtgtggttggcagatgaaattaacattaattacggatttgggagggaaaataagaagtgattaggg 43469637  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43469638 caacactgccagctcatcaagtctggcttttataataaaggatt 43469681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 497 - 690
Target Start/End: Original strand, 24394586 - 24394781
Alignment:
Q  497 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 595  Q
    ||||| ||||||||||||| ||||||  || ||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  24394586 ttaaattaaattgcagaaagtaaatgatacgagttatttgttaacccatttcggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatc 24394685  T
Q  596 gactataa-aatattagtttgaagtcctacgtaaactacctccggtttac-aggtttcgcacctaatcactacccgtgatatttctatctaaaacac 690  Q
     ||||||| | |||| |||||||||||| ||| ||| |||||||||||||  |  |||||||||||||| ||||  |||||||||||||||| ||||    
T  24394686 cactataatagtatttgtttgaagtcctgcgt-aacaacctccggtttacttgccttcgcacctaatcattacctatgatatttctatctaagacac 24394781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 606 - 695
Target Start/End: Original strand, 27598709 - 27598797
Alignment:
Q  606 tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacaccta 695  Q
    ||||||||||||  ||||| ||||| |||||||||||||  ||||||||||||||||||||  |||||||||||||||||||||| ||||    
T  27598709 tattagtttgaaa-cctacataaacaacctccggtttactagtttcgcacctaatcactacttgtgatatttctatctaaaacactccta 27598797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 549 - 685
Target Start/End: Complemental strand, 22652464 - 22652327
Alignment:
Q  549 gtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaat-attagtttgaagtcctacgtaaactacctccggtttacagg 647  Q
    |||||||||| ||||||| |||||||||  |||| | |||||||||  ||||||| || ||||||||||||||||| || ||| |||||| ||| ||       
T  22652464 gtgcaacgtcgcctacatatgggggcatcgaagccaggaaggaaattcactataatattattagtttgaagtcctatgtgaacaacctccagttcacttc 22652365  T
Q  648 tttcgcacctaatcactacccgtgatatttctatctaa 685  Q
     ||| |||| ||| ||||||  ||||||||||||||||    
T  22652364 cttctcaccaaataactacctttgatatttctatctaa 22652327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 836
Target Start/End: Complemental strand, 19006475 - 19006407
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaa-ttacaactca 836  Q
    ||||||||| | ||||||||||| |||  ||||||||||||||| |||||| |||||| ||||||||||    
T  19006475 agacacacttcgagaaacagaattcactcttgcttaaaagcttatgagtgattcacaacttacaactca 19006407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 576
Target Start/End: Original strand, 16842517 - 16842552
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcat 576  Q
    |||||||||||||||||||||||||||||| |||||    
T  16842517 ccagttcggtgcaacgtcacctacatctggaggcat 16842552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 798 - 854
Target Start/End: Original strand, 27598887 - 27598944
Alignment:
Q  798 ttgcttaaaagcttacgagtgactcacaa-ttacaactcaactatcagtcaaactcta 854  Q
    |||| |||||||||| |||||| |||||| ||||||||||||||| |||| |||||||    
T  27598887 ttgcataaaagcttatgagtgattcacaacttacaactcaactattagtccaactcta 27598944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 10646041 - 10646184
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  10646041 tgaatggtcatcagatcaaaggctgagatttagggtgtggttggcagatgagattagcattaattacggatttgggagggaaaataagaagtgattaggg 10646140  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  10646141 caacactgccagctcatcaagtctggcttttagaataaaggatt 10646184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 474 - 695
Target Start/End: Complemental strand, 11918556 - 11918335
Alignment:
Q  474 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaac-cagttcggtgcaacgtcacctacatctgggg 572  Q
    |||||||| |||| |  ||||| ||||||||||||| || || |||||  |||||  |||||| |||| ||||| |||||||| ||||||||||||||||    
T  11918556 caacacaaataaccataaacaacttaaagtaaattgtaggaagtaaataacacaaagtatttgttaactcagttgggtgcaacatcacctacatctgggg 11918457  T
Q  573 gcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtg 671  Q
    |||  ||||| |||||||||||  | | ||| | | |||||||||||||||| |||||| ||||| ||||||| |  || ||||||||||||||||||||    
T  11918456 gcagccaagccatgaaggaaat--attgtaatagttttagtttgaagtcctatgtaaacaacctctggtttactgccttggcacctaatcactacccgtg 11918359  T
Q  672 atatttctatctaaaacacaccta 695  Q
    |||||||||||||| |||||||||    
T  11918358 atatttctatctaagacacaccta 11918335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 483 - 685
Target Start/End: Original strand, 5299087 - 5299290
Alignment:
Q  483 taacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaag 581  Q
    ||||||||||||| ||||||  ||  || |||| |||||||||||||||||| | ||||| |||| ||| |||| || |||| |||| |||||   ||||    
T  5299087 taacaaataacaacttaaagataaaagctgaaagtaaatggcacaagttattcgttaacccagtttggtacaacatcgcctagatctaggggctaccaag 5299186  T
Q  582 ctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttcta 680  Q
    | | |||||||||| ||||||| | ||||| ||||||| | | | ||||| |||||  | ||||  | |||||||||||||||||||||||| |||||||    
T  5299187 ccaggaaggaaatccactataatagtattattttgaag-catgcataaacaacctcaagattactagcttcgcacctaatcactacccgtgaaatttcta 5299285  T
Q  681 tctaa 685  Q
    |||||    
T  5299286 tctaa 5299290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 769 - 852
Target Start/End: Complemental strand, 6629282 - 6629198
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaa-ttacaactcaactatcagtcaaactc 852  Q
    |||||| ||||  ||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||||| |||| |||||    
T  6629282 agacactctccgtgaaacagaatccactcttgcttaaaagcttacgagtgattcacaacttacaactcaactataagtccaactc 6629198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 586 - 695
Target Start/End: Complemental strand, 6629457 - 6629348
Alignment:
Q  586 gaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatcta 684  Q
    |||||||||| ||||||| | ||||||||||||| ||| | ||||| || | | ||||||  |||||||||||||||||||||| |||||||||||||||    
T  6629457 gaaggaaatccactataatagtattagtttgaag-cctgcataaacaactttcagtttactagtttcgcacctaatcactacccatgatatttctatcta 6629359  T
Q  685 aaacacaccta 695  Q
    | |||| ||||    
T  6629358 agacactccta 6629348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 769 - 843
Target Start/End: Complemental strand, 11918266 - 11918192
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaattacaactcaactatca 843  Q
    ||||||||| ||| |||||||||| ||  |||||||||| ||||||||||| ||||||||||| |||||||||||    
T  11918266 agacacacttcaataaacagaatctactcttgcttaaaaacttacgagtgattcacaattacagctcaactatca 11918192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 769 - 826
Target Start/End: Original strand, 15708402 - 15708459
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaa 826  Q
    ||||||||||||||||||| |||||||  |||||||||||||||||||||| ||||||    
T  15708402 agacacactccaagaaacaaaatccactcttgcttaaaagcttacgagtgattcacaa 15708459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 637
Target Start/End: Original strand, 12505688 - 12505803
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatct-gggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtc 620  Q
    |||||| |||||| ||||| ||||||||| |||||||||||||||| ||||||   ||||||| |||||||||| ||||||| | ||| ||||||||| |    
T  12505688 cacaagatatttgttaacccagttcggtgtaacgtcacctacatctggggggctaccaagctaggaaggaaatctactataatagtatcagtttgaag-c 12505786  T
Q  621 ctacgtaaactacctcc 637  Q
    || ||||||||| ||||    
T  12505787 cttcgtaaactatctcc 12505803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 574
Target Start/End: Original strand, 30226084 - 30226117
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    ||||||||||||||||||||||||||||||||||    
T  30226084 ccagttcggtgcaacgtcacctacatctgggggc 30226117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 603
Target Start/End: Original strand, 12484259 - 12484339
Alignment:
Q  525 acaagttatttgctaacca-gttcggtgcaacgtcacctacatct-gggggcattcaagctatgaaggaaatcgactataa 603  Q
    ||||| |||||| |||||| |||||||| |||||||||||||||| ||||||   ||||||| |||||||||| |||||||    
T  12484259 acaagatatttgttaaccaagttcggtgtaacgtcacctacatctggggggctaccaagctaggaaggaaatctactataa 12484339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 2076505 - 2076563
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgacta 600  Q
    |||||||||||||||||||||||| |||||||||   ||||| |||||||||||| ||||    
T  2076505 ccagttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2076563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 2082924 - 2082982
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgacta 600  Q
    |||||||||||||||||||||||| |||||||||   ||||| |||||||||||| ||||    
T  2082924 ccagttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2082982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 618
Target Start/End: Complemental strand, 9732920 - 9732817
Alignment:
Q  517 taaatggcacaagttatttgctaac-cagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactata-aaatattagttt 614  Q
    |||| |||||||||| |||| |||| |||||| ||||||||||||||| ||||||||||   ||||| ||||| |||||  ||||||  ||||||| |||    
T  9732920 taaaaggcacaagttgtttgttaactcagttcagtgcaacgtcacctagatctgggggctaccaagccatgaacgaaattcactatagcaatattaattt 9732821  T
Q  615 gaag 618  Q
    ||||    
T  9732820 gaag 9732817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 14984671 - 14984729
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgacta 600  Q
    |||||||||||||||||||||||| |||||||||  |||||| | |||||||||| ||||    
T  14984671 ccagttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 14984729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 15414282 - 15414340
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgacta 600  Q
    |||||||||||||||||||||||| |||||||||  |||||| | |||||||||| ||||    
T  15414282 ccagttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 15414340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 9e-54; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 226 - 369
Target Start/End: Complemental strand, 46566711 - 46566568
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||  ||| |||||||||||  ||||||||||||||    
T  46566711 tgaaaggtcatcagatcaaaggctgagatttaggatgtggttggcagatgagattagcattaattacaaatttgggagggaaaataagaagtgattaggg 46566612  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  46566611 caacactgccagctcatcaaatctggcttttataataaaggatt 46566568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 226 - 368
Target Start/End: Original strand, 12606569 - 12606711
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||  || |||||||||||    
T  12606569 tgaaaggtcatcagatcaaaggctgagatttagggtgtggttggcagatgggattagcattaattatggattagggagggaaaataaggagtgattaggg 12606668  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    ||||||||||||| |||||||||||||||||||| ||||||||    
T  12606669 caacactgccagcacatcaagtctggcttttatagtaaaggat 12606711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 246 - 368
Target Start/End: Original strand, 49195411 - 49195533
Alignment:
Q  246 ggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaa 345  Q
    ||||| ||||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49195411 ggctgtgatttagtgtgtggttggcagatgagattaacattaattacagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaa 49195510  T
Q  346 gtctggcttttataataaaggat 368  Q
    |||||||||||||||||||||||    
T  49195511 gtctggcttttataataaaggat 49195533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 226 - 368
Target Start/End: Complemental strand, 40908458 - 40908316
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||||| | | ||| ||||||||||||  ||||||||||||| |||||||| |||||| | |   ||||||||||||||  ||   |||||||||    
T  40908458 tgaaaggtcatgaaagcaacggctgagatttaacgtgtggttggcagatgagattaacattaaattcatgttagggagggaaaatgagggatgattaggg 40908359  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  40908358 caacactgccagctcatcaagtctggcttttatagtaaaggat 40908316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 524 - 681
Target Start/End: Original strand, 21433929 - 21434088
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    ||||||||||||||||||| | ||| ||||||| ||||||||||||| |||||||||||  | |||||||||| ||||||| | ||||| ||  ||||||    
T  21433929 cacaagttatttgctaacccaattcagtgcaacttcacctacatctgagggcattcaagtcaagaaggaaatccactataatagtattaattcaaagtcc 21434028  T
Q  622 tacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctat 681  Q
    || || ||| |||| | ||| || |  ||| ||| |||||||||||||||||||||||||    
T  21434029 tatgtgaacaaccttcagttcactgccttctcacttaatcactacccgtgatatttctat 21434088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 772 - 854
Target Start/End: Complemental strand, 4650234 - 4650152
Alignment:
Q  772 cacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaa-ttacaactcaactatcagtcaaactcta 854  Q
    |||||||| |||||||||||| ||  |||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  4650234 cacactccgagaaacagaatc-actcttgcttaaaagcttacgagtgattcacaacttacaactcaactatcagtctaactcta 4650152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 524 - 685
Target Start/End: Original strand, 25123321 - 25123484
Alignment:
Q  524 cacaagttatttgctaac-cagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| |||| || ||||||| |||||||||||||| ||||||||||||||| |||||||||||| ||||||| | ||||| ||  ||||||    
T  25123321 cacaaggtatttgttaacacaattcggtgtaacgtcacctacatgtgggggcattcaagccatgaaggaaatccactataatagtattaattcaaagtcc 25123420  T
Q  622 tacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaa 685  Q
    || || ||| ||||| |||| ||    ||| ||| |||||||||||  || |||||||||||||    
T  25123421 tatgtgaacaacctctggttcactatcttctcacttaatcactaccattggtatttctatctaa 25123484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 781 - 854
Target Start/End: Original strand, 24285157 - 24285231
Alignment:
Q  781 agaaacagaatccacctttgcttaaaagcttacgagtgactcacaa-ttacaactcaactatcagtcaaactcta 854  Q
    |||||||||||| ||  ||||||||||||||||| |||| |||||| ||||||||||||||||| || |||||||    
T  24285157 agaaacagaatcaactattgcttaaaagcttacgggtgattcacaatttacaactcaactatcaatccaactcta 24285231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Complemental strand, 49086751 - 49086718
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    |||||||||||||||||||||||||| |||||||    
T  49086751 ccagttcggtgcaacgtcacctacatgtgggggc 49086718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 9e-51; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 246 - 368
Target Start/End: Original strand, 31525455 - 31525577
Alignment:
Q  246 ggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaa 345  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31525455 ggctgtgatttagtgtgtggttggcagttgagattaacattaattacagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaa 31525554  T
Q  346 gtctggcttttataataaaggat 368  Q
    |||||||||||||||||||||||    
T  31525555 gtctggcttttataataaaggat 31525577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 23538151 - 23538294
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||  |  |||||||||||    
T  23538151 tgaaaggtcatcagatcaaaggccgagatttagggtgtggttggcagatgagattagcattaattacagattagggaggaaaaataatgagtgattaggg 23538250  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||    
T  23538251 caacactgctagctcatcaagtctgactttaataataaaggatt 23538294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 543 - 690
Target Start/End: Complemental strand, 39668577 - 39668431
Alignment:
Q  543 agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtt 641  Q
    |||||||||||||||||  ||||||||||||| | ||| ||| |||||||||  | ||||| | ||||| ||||||| ||| | ||||| |||||| |||    
T  39668577 agttcggtgcaacgtcatttacatctgggggc-tccaacctaggaaggaaattcattataatagtattactttgaag-cctgcataaacaacctcctgtt 39668480  T
Q  642 tacaggtttcgcacctaatcactacccgtgatatttctatctaaaacac 690  Q
    |||  | ||||||||||||||||||||||||||||||||||||| ||||    
T  39668479 tactagcttcgcacctaatcactacccgtgatatttctatctaagacac 39668431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 483 - 695
Target Start/End: Complemental strand, 11865333 - 11865121
Alignment:
Q  483 taacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggggcattcaag 581  Q
    ||||||||||||| ||||||  ||  ||| ||| |||| ||||||||||||||| ||| ||||||||||||||||||  |||| |||||||||   ||||    
T  11865333 taacaaataacaacttaaagataaaggcaaaaagtaaaaggcacaagttatttgttaacccagttcggtgcaacgtcttctacgtctgggggctaccaag 11865234  T
Q  582 ctatgaaggaaatcgactataa-aatattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttcta 680  Q
    | | |||| ||||  ||||||| | | ||||||||||| | | ||||||  ||||||| | |||  | |||||||||||||||||||| ||  |||||||    
T  11865233 ccaggaagaaaattcactataatagtgttagtttgaag-catgcgtaaa-aacctccgttctactagcttcgcacctaatcactacccatgtaatttcta 11865136  T
Q  681 tctaaaacacaccta 695  Q
    ||||| |||||||||    
T  11865135 tctaagacacaccta 11865121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 769 - 846
Target Start/End: Complemental strand, 39668372 - 39668295
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaattacaactcaactatcagtc 846  Q
    ||||||||||| ||||||| |||||||  |||||||||||||||| ||||| |||||| ||||| |||||||||||||    
T  39668372 agacacactccgagaaacataatccactcttgcttaaaagcttacaagtgattcacaaatacaattcaactatcagtc 39668295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 572
Target Start/End: Original strand, 24608673 - 24608736
Alignment:
Q  510 cagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggg 572  Q
    |||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  24608673 cagaaagtaaaaggcacaagttatttgttaacccagttcggtgcaacgtcacctacgtctgggg 24608736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 576
Target Start/End: Original strand, 12607263 - 12607316
Alignment:
Q  524 cacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggggcat 576  Q
    |||||| |||||| ||| |||||||||||||||||||||||||||||| |||||    
T  12607263 cacaagatatttgataatccagttcggtgcaacgtcacctacatctggaggcat 12607316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 846
Target Start/End: Original strand, 12492839 - 12492918
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcac--aattacaactcaactatcagtc 846  Q
    ||||||||||  ||||||||||||| |  |||||||||||||||  ||||| ||||  || |||||||||||||||||||    
T  12492839 agacacactctgagaaacagaatccgctcttgcttaaaagcttataagtgattcacaaaaatacaactcaactatcagtc 12492918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 8652037 - 8652128
Alignment:
Q  277 gattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    ||||| |||||||||||| |||||||||||||   ||||  |||||||||||   ||| ||||   ||||||| ||||||||||||||||||    
T  8652037 gattaacattaattacggtttagggagggaaactgagaatggattagggcaagcatgctagcttggcaagtctagcttttataataaaggat 8652128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 8663844 - 8663935
Alignment:
Q  277 gattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    ||||| |||||||||||| |||||||||||||   ||||  |||||||||||   ||| ||||   ||||||| ||||||||||||||||||    
T  8663844 gattaacattaattacggtttagggagggaaactgagaatggattagggcaagcatgctagcttggcaagtctagcttttataataaaggat 8663935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 819
Target Start/End: Original strand, 50908074 - 50908124
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtga 819  Q
    ||||||||||| ||||| | |||||||  ||||||||||||||||||||||    
T  50908074 agacacactccgagaaataaaatccactcttgcttaaaagcttacgagtga 50908124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Original strand, 13268845 - 13268878
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    ||||||||||||||| ||||||||||||||||||    
T  13268845 ccagttcggtgcaacttcacctacatctgggggc 13268878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 246 - 368
Target Start/End: Complemental strand, 33366047 - 33365925
Alignment:
Q  246 ggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaa 345  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33366047 ggctgtgatttagtgtgtggttggcagttgagattaacattaattatagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaa 33365948  T
Q  346 gtctggcttttataataaaggat 368  Q
    |||||||||||||||||||||||    
T  33365947 gtctggcttttataataaaggat 33365925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 524 - 695
Target Start/End: Complemental strand, 43902211 - 43902040
Alignment:
Q  524 cacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcc 621  Q
    |||||| |||||| ||| ||| |||||||||||||||||||||| ||||||| | ||||| | ||| |||||| ||||||| | |||||||||||||||     
T  43902211 cacaaggtatttgttaatccaattcggtgcaacgtcacctacatttgggggc-tccaagccaggaaagaaatctactataacagtattagtttgaagtc- 43902114  T
Q  622 tacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacaccta 695  Q
    ||| ||||| ||||| |||||||  | |||||||||||||||||||||||||||| |||||||| |||| ||||    
T  43902113 tacataaacaacctctggtttactagcttcgcacctaatcactacccgtgatattcctatctaagacactccta 43902040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 541 - 682
Target Start/End: Complemental strand, 19584069 - 19583927
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcctacgtaaactacctccgg 639  Q
    ||||||| |||||| ||||||||||||| |||| || ||||| | |||| ||||| ||||||| | |||||||| ||||||||| || ||| ||| ||||    
T  19584069 ccagttcagtgcaatgtcacctacatctaggggaatccaagccaggaagaaaatccactataatagtattagttcgaagtcctatgtgaacaacccccgg 19583970  T
Q  640 tttacaggtttcgcacctaatcactacccgtgatatttctatc 682  Q
    || ||    ||| |||| |||||||||||||||||||||||||    
T  19583969 ttcactaccttctcaccgaatcactacccgtgatatttctatc 19583927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 781 - 846
Target Start/End: Complemental strand, 43901959 - 43901894
Alignment:
Q  781 agaaacagaatccacctttgcttaaaagcttacgagtgactcacaattacaactcaactatcagtc 846  Q
    ||||||| |||||||  |||||||||||||||||| ||| |||||  |||||||||||||||||||    
T  43901959 agaaacataatccactcttgcttaaaagcttacgattgattcacagatacaactcaactatcagtc 43901894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 594
Target Start/End: Complemental strand, 10082452 - 10082380
Alignment:
Q  523 gcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaat 594  Q
    ||||||||| |||| ||||| |||||||||||||||||||||||||| |||||   ||||||| |||||||||    
T  10082452 gcacaagttgtttgttaacccagttcggtgcaacgtcacctacatctaggggctaccaagctaggaaggaaat 10082380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 603
Target Start/End: Original strand, 8531391 - 8531453
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa 603  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| |  ||||||||| |||||||    
T  8531391 ccagttcggtgcaacgtcacctacctctggtggcatccaagccagaaaggaaatccactataa 8531453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 618
Target Start/End: Complemental strand, 10189377 - 10189280
Alignment:
Q  523 gcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactat-aaaatattagtttgaag 618  Q
    ||||||||| |||| ||||| |||||||||||||||||||||||| | |||||   ||||||| |||||||||  ||||| | ||||||| |||||||    
T  10189377 gcacaagttgtttgttaacccagttcggtgcaacgtcacctacatgtaggggctaccaagctaggaaggaaattcactatgataatattaatttgaag 10189280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 695
Target Start/End: Complemental strand, 2166020 - 2165931
Alignment:
Q  606 tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacaccta 695  Q
    |||||||| ||||||||| || | | |||||||||  |||   ||| | |||||||||||||| |||||||||||||||| || ||||||    
T  2166020 tattagttcgaagtcctatgtgatcaacctccggtgcacaaccttctcgcctaatcactacccatgatatttctatctaagactcaccta 2165931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 584
Target Start/End: Original strand, 27716326 - 27716387
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagcta 584  Q
    |||||| |||||| ||||| ||||| |||||||||||||||||| || |||||| |||||||    
T  27716326 cacaagatatttggtaacctagttcagtgcaacgtcacctacatatgcgggcatccaagcta 27716387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 8e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 474 - 854
Target Start/End: Complemental strand, 38802483 - 38802105
Alignment:
Q  474 caacacaattaacaaataacaag-ttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctggg 571  Q
    |||||||| |||||| ||||||  || |||||||||| ||||| || |||| ||||||||||||  || |||||| ||| |||| |||||||||||||||    
T  38802483 caacacaaataacaattaacaaacttgaagtaaattgtagaaaatagatggtacaagttatttgtaaatccagtttggtacaacatcacctacatctggg 38802384  T
Q  572 ggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggt-ttcgcacctaatcactacccg 669  Q
    ||||| ||||    |||||||||| ||||||| | ||||||||||||||| || ||||||  ||||| ||||||  || ||||||||||||||||| |||    
T  38802383 ggcatccaagtctggaaggaaatccactataatagtattagtttgaagtcttatgtaaacagcctccagtttacctgtcttcgcacctaatcactatccg 38802284  T
Q  670 tgatatttctatctaaaacacacctaaaatatgagacaccccccacctcctctcaaatcactcactagtgatttcaacnnnnnnnnnnnntcgaaacaaa 769  Q
    ||||||||||||||||  ||||||| |||||| | || || | ||| |||| || |||||||||| ||||||  ||||            || |||        
T  38802283 tgatatttctatctaaggcacacct-aaatataaaacccctctcacttcctttc-aatcactcaccagtgataacaac----aagtacaatcaaaatggg 38802190  T
Q  770 gacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaattacaactcaactatcagtcaaactcta 854  Q
    ||||||||| ||||||||||||||||  ||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  38802189 gacacactctaagaaacagaatccactcttgattaaaagcttacgagtgattcacacttacaactcaactatcagtccaactcta 38802105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 560 - 690
Target Start/End: Original strand, 14423719 - 14423849
Alignment:
Q  560 cctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcaccta 658  Q
    ||||||||||||| ||| ||||| | |||||||||| ||||||| | |||||||| ||||||||| || |   |||||||||| || |  ||| ||| |     
T  14423719 cctacatctgggg-catccaagccaggaaggaaatccactataatagtattagttcgaagtcctatgtgagtaacctccggttcactgccttctcacatg 14423817  T
Q  659 atcactacccgtgatatttctatctaaaacac 690  Q
    |||||||||| |||||||||||||||| ||||    
T  14423818 atcactacccatgatatttctatctaagacac 14423849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Original strand, 24482317 - 24482350
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    |||||| |||||||||||||||||||||||||||    
T  24482317 ccagtttggtgcaacgtcacctacatctgggggc 24482350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 517 - 854
Target Start/End: Original strand, 15324990 - 15325325
Alignment:
Q  517 taaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagttt 614  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||   ||||| ||||| | |||| ||||| ||||||| | |||||||||    
T  15324990 taaatggcacaagttatttgttaacccagttcggtgcaacttcaccaacatcttaaggcatccaagccaggaagaaaatctactataatagtattagttt 15325089  T
Q  615 gaagtcctacgtaaactacctccggtttacaggt-ttcgcacctaatcactacccgtgat-atttctatctaaaacacacctaaaatatgagacaccccc 712  Q
     ||||||||||||||| |||| ||||||||  |  ||||||| |||||||||| |||||| |||| ||||||| |||| |||| | || || || || |     
T  15325090 aaagtcctacgtaaacaaccttcggtttacttgccttcgcacttaatcactactcgtgattatttttatctaagacactcctaga-taagatacccctct 15325188  T
Q  713 cacctcctctcaaatcactcactagtgatttcaacnnnnnnnnnnnntcgaaacaaagacacactccaagaaacagaatccacctttgcttaaaagctta 812  Q
    ||| |||| |||| |||||||  |  |||  ||||            || ||||| || ||||||||||||||| |||| |||  |||||||||||||||    
T  15325189 cacttcctttcaa-tcactcatcaacgataacaacaaatacaa----tcaaaacagaggcacactccaagaaacggaattcactcttgcttaaaagctta 15325283  T
Q  813 cgagtgactcacaattacaactcaactatcagtcaaactcta 854  Q
    | ||||| ||||||||||||||||||||||||||||||||||    
T  15325284 caagtgattcacaattacaactcaactatcagtcaaactcta 15325325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 226 - 369
Target Start/End: Complemental strand, 3081345 - 3081202
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||||| | | ||| ||||||||||||  ||||| ||||||| |||||||| |||||| | ||  ||||||||||||||  ||   |||||||||    
T  3081345 tgaaaggtcatgaaagcaacggctgagatttaatgtgtgattggcagatgagattaacattaaatgcgtgttagggagggaaaatgagggatgattaggg 3081246  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  3081245 caacactgccagctcatcaagtctggctttaatagtaaaggatt 3081202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 541 - 695
Target Start/End: Complemental strand, 21713511 - 21713356
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccgg 639  Q
    |||||| |||||||| |||||||||| | ||||||| ||| | | |||||||||| ||||||| | ||||||||||||||| |  |||||| ||||| ||    
T  21713511 ccagtttggtgcaacatcacctacatgtaggggcatccaaaccaggaaggaaatccactataatagtattagtttgaagtcatgtgtaaacaacctctgg 21713412  T
Q  640 tttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacaccta 695  Q
    ||||| |  |||||||||||||||||||| |||||||||||||||| || ||||||    
T  21713411 tttactgccttcgcacctaatcactacccatgatatttctatctaagactcaccta 21713356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 508 - 692
Target Start/End: Complemental strand, 31067679 - 31067492
Alignment:
Q  508 tgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aa 605  Q
    |||| ||| |||||| ||||||||||||| ||||| |||| ||||||||||||||||| |||||||||   |||   | |||||||||| ||||||| |     
T  31067679 tgcaaaaagtaaatgacacaagttatttgttaacctagtttggtgcaacgtcacctacgtctgggggctaccaattcaggaaggaaatccactataatag 31067580  T
Q  606 tattagtttgaagtcctacgtaaactacctccggtttac-aggtttcgcacctaatcactacccgtgatatttctatctaaaacacac 692  Q
    |||||||||||||||||||| |||| ||||| ||||| |  |  ||| |||||||||||||||| |||||||||||||||| ||||||    
T  31067579 tattagtttgaagtcctacggaaacaacctctggtttgcttgccttcacacctaatcactacccatgatatttctatctaagacacac 31067492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 541 - 695
Target Start/End: Original strand, 17395555 - 17395709
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccgg 639  Q
    |||||||||||||||||| ||||  | |||||||  |||||| | |||||||||| ||||||| | ||||||||||||| ||| | ||||| || |||||    
T  17395555 ccagttcggtgcaacgtcgcctaagtgtgggggctatcaagccaggaaggaaatccactataatagtattagtttgaag-cctgcataaacaacatccgg 17395653  T
Q  640 tttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacaccta 695  Q
    |||||  | |||||||||||||||| ||||||  |||||||||||| |||||||||    
T  17395654 tttactagattcgcacctaatcacttcccgtgtaatttctatctaagacacaccta 17395709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 546 - 690
Target Start/End: Original strand, 8944737 - 8944881
Alignment:
Q  546 tcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtcctacgtaaactacctccggtttac 644  Q
    |||||||||| |||||||||| ||||||    |||  || |||||||||| ||||||| | ||||||||||||| ||| | ||||| ||||| |||||||    
T  8944737 tcggtgcaacatcacctacatttgggggttaccaaattaggaaggaaatctactataatagtattagtttgaag-cctgcataaacaacctctggtttac 8944835  T
Q  645 aggtttcgcacctaatcactacccgtgatatttctatctaaaacac 690  Q
      | ||||||||||||||||||| ||||||||||||||||| ||||    
T  8944836 tagcttcgcacctaatcactacctgtgatatttctatctaagacac 8944881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 10983161 - 10983229
Alignment:
Q  300 ggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    |||||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10983161 ggagggaaaatcaggattgattagggcaa-actgccagctcatcaagtctggcttttataataaaggatt 10983229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 17841084 - 17840999
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaattacaactcaactatcagtcaaactcta 854  Q
    ||||||||||||| ||||| |||||||  |||| |||||||| || ||||| |||||||||||||||||||||||||| |||||||    
T  17841084 agacacactccaataaacaaaatccactcttgcgtaaaagctgacaagtgattcacaattacaactcaactatcagtccaactcta 17840999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 475 - 695
Target Start/End: Original strand, 18593508 - 18593728
Alignment:
Q  475 aacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctggggg 573  Q
    ||||||| ||||||  ||||| || |||||||||| || || |||||  |||||  |||||| ||||| |||||||||||| ||||||||||||| ||||    
T  18593508 aacacaaataacaataaacaaatttaagtaaattgtaggaagtaaataacacaaagtatttgttaacccagttcggtgcaatgtcacctacatct-gggg 18593606  T
Q  574 cattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgtga 672  Q
    ||| ||||| | ||||| |||| ||||||| ||||||||||||||||| |  ||| |  |||||  ||||||    ||| ||  || |||||||||||||    
T  18593607 catccaagccaagaagg-aatccactataataatattagtttgaagtcatttgtatataacctctagtttacttccttcacatttagtcactacccgtga 18593705  T
Q  673 tatttctatctaaaacacaccta 695  Q
    ||||||||||||| || ||||||    
T  18593706 tatttctatctaagactcaccta 18593728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 497 - 685
Target Start/End: Complemental strand, 17841348 - 17841159
Alignment:
Q  497 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaacca-gttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 595  Q
    ||||| |||||| ||| || |||||| |||||||||||  |||| || |||||  |||||||||| ||||| |||||||||  ||||   ||||||| ||    
T  17841348 ttaaaataaattacagtaagtaaatgacacaagttatt--ctaatcaagttcgtggcaacgtcacatacatatgggggcatcaaagcctggaaggaagtc 17841251  T
Q  596 gactataaaa-tattagtttgaagtcctacgtaaactacctccggtttac-aggtttcgcacctaatcactacccgtgatatttctatctaa 685  Q
     ||||||| | ||||||||||||||| ||||||||| |||||||||||||     ||| |  |||||||||||||||| |||||||||||||    
T  17841250 cactataatagtattagtttgaagtcatacgtaaacaacctccggtttactttccttctcttctaatcactacccgtggtatttctatctaa 17841159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 584
Target Start/End: Complemental strand, 40588850 - 40588739
Alignment:
Q  474 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggg 572  Q
    |||||||||||| ||  ||||| ||||||| |||||||| || |||||  |||| | |||||| ||| |||||||| |||||||||||||||||||||||    
T  40588850 caacacaattaataataaacaaattaaagtcaattgcaggaagtaaataacacagggtatttgttaatccagttcgatgcaacgtcacctacatctgggg 40588751  T
Q  573 gcattcaagcta 584  Q
    | || |||||||    
T  40588750 gtatccaagcta 40588739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 854
Target Start/End: Complemental strand, 31067419 - 31067336
Alignment:
Q  772 cacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcac-aattacaactcaactatcagtcaaactcta 854  Q
    |||||||| ||||| |||||| ||  ||||||||||||||| |||||| |||| |||||||||||||||||||||  |||||||    
T  31067419 cacactccgagaaatagaatctactcttgcttaaaagcttatgagtgattcacaaattacaactcaactatcagttcaactcta 31067336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 783 - 846
Target Start/End: Original strand, 45550281 - 45550344
Alignment:
Q  783 aaacagaatccacctttgcttaaaagcttacgagtgactcacaattacaactcaactatcagtc 846  Q
    ||||| |||||||  ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  45550281 aaacataatccactcttgcttagaagcttacgagtgattcacaattacaactcaactattagtc 45550344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 769 - 854
Target Start/End: Original strand, 18593798 - 18593883
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaattacaactcaactatcagtcaaactcta 854  Q
    ||||||||||||| ||| ||||||||   || ||||||||||| ||||||| || |||||||||| |||||||||||  |||||||    
T  18593798 agacacactccaataaatagaatccattctttcttaaaagcttgcgagtgattcgcaattacaacgcaactatcagtttaactcta 18593883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 840
Target Start/End: Complemental strand, 8162825 - 8162753
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaa-ttacaactcaacta 840  Q
    ||||||||| ||||||||| |||  || ||||||||||||||||| ||||| ||||||  |||||||||||||    
T  8162825 agacacactacaagaaacaaaatttacttttgcttaaaagcttacaagtgattcacaacatacaactcaacta 8162753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 603
Target Start/End: Original strand, 20186609 - 20186668
Alignment:
Q  544 gttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa 603  Q
    |||||||||| ||||||||||||||||||||||| |||  | ||| |||||| |||||||    
T  20186609 gttcggtgcagcgtcacctacatctgggggcattaaagtcaggaatgaaatccactataa 20186668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 832
Target Start/End: Complemental strand, 21713293 - 21713230
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaattacaa 832  Q
    ||||||||||||| ||||| ||| |||  |||||||||||||||| ||||| |||||| |||||    
T  21713293 agacacactccaataaacataatacactcttgcttaaaagcttacaagtgattcacaaatacaa 21713230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 781 - 846
Target Start/End: Original strand, 25867403 - 25867469
Alignment:
Q  781 agaaacagaatccacctttgcttaaaagcttacgagtgactcacaa-ttacaactcaactatcagtc 846  Q
    ||||||||||| |||  |||||||||| ||||| ||||| |||||| ||||||||||||||| ||||    
T  25867403 agaaacagaattcactcttgcttaaaatcttacaagtgattcacaacttacaactcaactataagtc 25867469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 649 - 695
Target Start/End: Complemental strand, 28645718 - 28645672
Alignment:
Q  649 ttcgcacctaatcactacccgtgatatttctatctaaaacacaccta 695  Q
    |||||| ||||||||||||||||  |||||||||||| |||||||||    
T  28645718 ttcgcagctaatcactacccgtgtaatttctatctaagacacaccta 28645672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 826
Target Start/End: Complemental strand, 20476494 - 20476437
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaa 826  Q
    ||||||||||||||||| | ||||||   |||||||||||||||||||| | ||||||    
T  20476494 agacacactccaagaaataaaatccaatcttgcttaaaagcttacgagttattcacaa 20476437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 573
Target Start/End: Complemental strand, 28645858 - 28645793
Alignment:
Q  509 gcagaaattaaatggcacaagttatttgctaacca-gttcggtgcaacgtcacctacatctggggg 573  Q
    ||||||| |||| |||||| |||||||  |||||| |||| ||||||||||||||||||| |||||    
T  28645858 gcagaaagtaaaaggcacatgttatttattaaccaagttctgtgcaacgtcacctacatccggggg 28645793  T

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Target: scaffold0238 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 5189 - 5099
Alignment:
Q  279 ttagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    ||||||||||||| |||||| ||||| ||||  || |||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||    
T  5189 ttagcattaattatggattaaggaggaaaaataaggagtgattaggacaacactgccagcacatcaaatctggcttttatagtaaaggatt 5099  T

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Target: scaffold0238; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 5383 - 5323
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcatt 286  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |||||    
T  5383 tgaaaggtcatcagatcaaaggctgagatttagggtgtggttggcagatgggatttgcatt 5323  T

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Target: scaffold0054 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 524 - 623
Target Start/End: Complemental strand, 8831 - 8730
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||||||| ||| ||||| | |||| ||||| ||||||| | ||||||||||||||||    
T  8831 cacaagatatttgttaacccagtacggtgcaacgtcacctacatctggggacatccaagccaggaagaaaatctactataatagtattagtttgaagtcc 8732  T
Q  622 ta 623  Q
    ||    
T  8731 ta 8730  T

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Target: scaffold0070 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 769 - 826
Target Start/End: Original strand, 5995 - 6052
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcacaa 826  Q
    |||||| |||| ||||| |||||||||| ||||||||||||||| |||||| ||||||    
T  5995 agacactctccgagaaatagaatccaccattgcttaaaagcttatgagtgattcacaa 6052  T

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Target: scaffold0157 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 846
Target Start/End: Complemental strand, 27638 - 27559
Alignment:
Q  769 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgactcac--aattacaactcaactatcagtc 846  Q
    ||||||||||  ||||||||||||| |  |||||||||||||||  ||||| ||||  || |||||||||||||||||||    
T  27638 agacacactctgagaaacagaatccgctcttgcttaaaagcttataagtgattcacaaaaatacaactcaactatcagtc 27559  T

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Target: scaffold0062 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Complemental strand, 2238 - 2205
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    ||||||||||||||| ||||||||||||||||||    
T  2238 ccagttcggtgcaacttcacctacatctgggggc 2205  T

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