View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5025-Insertion-2 (Length: 756)
Name: NF5025-Insertion-2
Description: NF5025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5025-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 170 - 752
Target Start/End: Original strand, 1981126 - 1981709
Alignment:
| Q |
170 |
tgtatataggtttcaccatttcatgtggaacacatttctaaagtgtgagctacatgtatttcatccaataataaaaggatagatgttagaaaaagtattt |
269 |
Q |
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| T |
1981126 |
tgtatataggtttcaccattttatgtggaacacatttctaaagtgtgagctacatgtgtttcatccaataataaaaggatggatgttagaaaaaatattt |
1981225 |
T |
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| Q |
270 |
tatccaataataaaagaatggatattagaaagaatgtgttaaaatgagtgttgttaacgttactcgtaaaaaattcttctgaaaatgttttattattaaa |
369 |
Q |
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| T |
1981226 |
tatccaataataaaagaatggatattagaaagaatgtgttaaaatgagtgttgttaacattactcgtaaaaaattcttctgaaaatgttttattattaaa |
1981325 |
T |
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| Q |
370 |
acatttacaaatcaatatgaattttagctaaaatacttcgaaatcaaaatggtactttcaaatcttttaagttcataaaaacactttgaaatcttaaaag |
469 |
Q |
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| T |
1981326 |
atatttacaaatcaatatgaattttagctaaaatactttgaaatcaaaatggtactttcaaatcttttaagttcataaaaacactttgaaatcttaaaag |
1981425 |
T |
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| Q |
470 |
tgtgctataaatccatcaaaattatatttcttttgggtactcaatcttacaattatcataaaaagaatgcaaccgaggcgtaaaatctaaaaggat---- |
565 |
Q |
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| T |
1981426 |
tgtgctataaatccatcaaaattatatttcttttgggtactcaatcttacaattatcataaaaagaatgcaaccgaggcgtaaaatctaaaaggattcag |
1981525 |
T |
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| Q |
566 |
tcagtctttgaacatgttagaaatagtacacaaatattggttcatatgtcaaggtgattgatttgtcataaagaaagggctccccattgaagaaccctcg |
665 |
Q |
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| T |
1981526 |
tcagtctttgaacatgttagtaatagtacacaaacattggttcatatgtcaaggtgattgatttgtcat-aagaaagggctccccattgaagaaccctcg |
1981624 |
T |
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| Q |
666 |
tttctatcttttcttttctgttcctttagaagnnnnnnnnttactctgtattcaccaggaattaagcaatctctatactattatcaa |
752 |
Q |
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| T |
1981625 |
tttctatcttttcttttctgttcctttaaaag-aaaaaaattactctgtattcacca-gaattaagcaatctctatactattatcaa |
1981709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 1980792 - 1980911
Alignment:
| Q |
7 |
acattcaggcatcatcattaaatgataattgcttttacgagtagtagtagtcaaatccaagagcatataaattagaatgctaatttttgg-gaactaata |
105 |
Q |
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| T |
1980792 |
acattccggcatcatcattaaatgataattgcttttacgagtagtagtagtcaaatccaagagcatataaattagaatgctaatttttggagaactagta |
1980891 |
T |
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| Q |
106 |
taatttatatacatgaaaaa |
125 |
Q |
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| T |
1980892 |
taatttatatacgtgaaaaa |
1980911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 5206401 - 5206453
Alignment:
| Q |
278 |
aataaaagaatggatattagaaagaatgtgttaaaatgagtgttgttaacgtta |
331 |
Q |
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| T |
5206401 |
aataaaaaaatagatattaaaaa-aatgtgttaaaatgagtgttgttaacgtta |
5206453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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