View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5025-Insertion-6 (Length: 346)
Name: NF5025-Insertion-6
Description: NF5025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5025-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 346
Target Start/End: Original strand, 41890332 - 41890670
Alignment:
| Q |
8 |
ctatgtaaattccagcctgaaataaaagacacaaattgataatcaatacattgagaaaacaagtcttaaatttctttggtttcttgattcattacccaat |
107 |
Q |
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| T |
41890332 |
ctatgtaaattccagcctgaaataaaagacacaaattgataatcaatacattgagaaaacaagtcttaaatttctttggtttcttgattcattacccaat |
41890431 |
T |
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| Q |
108 |
tgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgactttttag |
207 |
Q |
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| T |
41890432 |
tgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgactttttag |
41890531 |
T |
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| Q |
208 |
tttcagaatcaattcatcttaaattgacaatttgacataagaatagagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccacca |
307 |
Q |
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| T |
41890532 |
tttcagaatcaattcattttaaattgacaatttgacataagaatagagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccacca |
41890631 |
T |
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| Q |
308 |
aagaatccaagaagatcgccaaagaatggaaaagtgact |
346 |
Q |
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| T |
41890632 |
aagaatccaagaagatcaccaaagaatggaaaagtgact |
41890670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 96 - 340
Target Start/End: Original strand, 41896022 - 41896276
Alignment:
| Q |
96 |
tcattacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataa |
195 |
Q |
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| T |
41896022 |
tcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataattcacaagaaaataa |
41896121 |
T |
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| Q |
196 |
ttgactttttagtttcagaatcaattcatcttaaa--ttgacaatttgacataagaatagaga--------ggacaagagagccttacaaaatatgaagt |
285 |
Q |
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| T |
41896122 |
ttcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaattgagaggacaagagtgccttacaaaatatgacgt |
41896221 |
T |
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| Q |
286 |
gggagcaaaaccaaatccaccaaagaatccaagaagatcgccaaagaatggaaaa |
340 |
Q |
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| T |
41896222 |
gggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaa |
41896276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 22551974 - 22551910
Alignment:
| Q |
269 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcgccaaagaa |
333 |
Q |
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| T |
22551974 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaa |
22551910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 22552153 - 22552070
Alignment:
| Q |
99 |
ttacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaatt |
182 |
Q |
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| T |
22552153 |
ttacccaatttatgaaccagttgatgctaaatctctttggtttcttgattattagccacattatactaggaagctgaaacaatt |
22552070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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