View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5025_high_12 (Length: 307)
Name: NF5025_high_12
Description: NF5025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5025_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 28 - 244
Target Start/End: Original strand, 43606735 - 43606952
Alignment:
| Q |
28 |
tcacatgcaacactcaccctcttctttaaccaagtgttcactcccatatccacgtgtcatcacctcctacctccttacttaaattaaattctaacatttt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43606735 |
tcacatgcaacactcaccctcttctttaaccaagtgttcactcccatatccacgtgtcatcacctcctacctccttacttaaattaaattctaacatttt |
43606834 |
T |
|
| Q |
128 |
tctcatcattatgtca-cnnnnnnnccctagtgaactgaactgaactaaactaagagtctaagacatattcctaattcaatggctgaaactctcagggat |
226 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43606835 |
tctcatcattatgtcaccaaaaaaaccctagtgaactgaactgaactaaactaagagtctaagacatattcctaattcaatggctgaaactctcagggat |
43606934 |
T |
|
| Q |
227 |
gactactacggttaccac |
244 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
43606935 |
gactactacggttaccac |
43606952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University