View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5025_high_1_N (Length: 373)

Name: NF5025_high_1_N
Description: NF5025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5025_high_1_N
NF5025_high_1_N
[»] chr5 (36 HSPs)
chr5 (29-359)||(38816609-38816932)
chr5 (164-239)||(19820428-19820503)
chr5 (190-319)||(22423764-22423895)
chr5 (164-231)||(22013364-22013431)
chr5 (164-238)||(42469171-42469245)
chr5 (189-238)||(15410483-15410532)
chr5 (186-238)||(6326332-6326384)
chr5 (162-287)||(37328829-37328955)
chr5 (203-287)||(3966492-3966577)
chr5 (179-237)||(15382442-15382500)
chr5 (203-236)||(6035472-6035505)
chr5 (272-321)||(8420075-8420124)
chr5 (186-239)||(21191090-21191143)
chr5 (164-231)||(2436878-2436939)
chr5 (267-319)||(9929668-9929720)
chr5 (203-239)||(17123037-17123073)
chr5 (186-230)||(21522722-21522766)
chr5 (186-230)||(21533288-21533332)
chr5 (203-239)||(27144452-27144488)
chr5 (164-239)||(6247572-6247647)
chr5 (203-287)||(11685928-11686012)
chr5 (196-239)||(14674251-14674294)
chr5 (196-239)||(19579683-19579726)
chr5 (179-238)||(21137654-21137713)
chr5 (196-239)||(34879332-34879375)
chr5 (196-238)||(5873548-5873590)
chr5 (291-321)||(24906250-24906280)
chr5 (208-238)||(27932229-27932259)
chr5 (205-239)||(28588708-28588742)
chr5 (186-232)||(36642803-36642849)
chr5 (190-239)||(19552577-19552626)
chr5 (164-237)||(30135264-30135336)
chr5 (212-241)||(32766975-32767004)
chr5 (179-239)||(13287433-13287493)
chr5 (203-239)||(31084312-31084348)
chr5 (203-287)||(41995460-41995543)
[»] chr7 (38 HSPs)
chr7 (164-238)||(27944991-27945065)
chr7 (164-238)||(24105629-24105702)
chr7 (207-289)||(29787354-29787435)
chr7 (186-239)||(11722132-11722185)
chr7 (177-287)||(24339605-24339716)
chr7 (189-270)||(19206025-19206107)
chr7 (203-287)||(32308109-32308194)
chr7 (209-319)||(11700798-11700909)
chr7 (179-239)||(1433419-1433479)
chr7 (159-319)||(7328639-7328805)
chr7 (164-235)||(2034392-2034462)
chr7 (188-239)||(2425767-2425818)
chr7 (164-239)||(43027503-43027578)
chr7 (179-238)||(43249958-43250017)
chr7 (197-239)||(8046061-8046103)
chr7 (203-270)||(22484014-22484082)
chr7 (197-239)||(23191879-23191921)
chr7 (189-239)||(26733279-26733329)
chr7 (208-282)||(30731031-30731104)
chr7 (206-279)||(11072290-11072362)
chr7 (188-237)||(49107795-49107844)
chr7 (203-239)||(20549780-20549816)
chr7 (200-239)||(2948669-2948708)
chr7 (203-287)||(6630897-6630982)
chr7 (196-239)||(21828439-21828482)
chr7 (207-238)||(28155563-28155594)
chr7 (165-239)||(598160-598233)
chr7 (188-238)||(5235960-5236010)
chr7 (221-287)||(9933282-9933347)
chr7 (197-239)||(20545270-20545312)
chr7 (179-237)||(26329418-26329476)
chr7 (188-237)||(4017830-4017879)
chr7 (291-320)||(17852091-17852120)
chr7 (203-236)||(25791642-25791675)
chr7 (187-239)||(11061110-11061162)
chr7 (291-319)||(15680900-15680928)
chr7 (179-239)||(17851396-17851456)
chr7 (203-239)||(22868031-22868067)
[»] chr6 (45 HSPs)
chr6 (186-287)||(10294079-10294181)
chr6 (179-239)||(9027143-9027203)
chr6 (164-239)||(853893-853968)
chr6 (179-287)||(16766662-16766771)
chr6 (179-239)||(5000660-5000720)
chr6 (179-319)||(5732474-5732604)
chr6 (164-232)||(8365560-8365628)
chr6 (166-238)||(12696277-12696348)
chr6 (189-319)||(8805524-8805656)
chr6 (179-287)||(9107355-9107464)
chr6 (188-239)||(9629357-9629408)
chr6 (164-239)||(30866178-30866253)
chr6 (164-238)||(6389693-6389767)
chr6 (189-239)||(9658854-9658904)
chr6 (201-239)||(19040339-19040377)
chr6 (164-232)||(3398569-3398637)
chr6 (179-239)||(7938081-7938141)
chr6 (190-238)||(13851712-13851760)
chr6 (179-238)||(7977865-7977924)
chr6 (196-239)||(20371144-20371187)
chr6 (179-282)||(34073337-34073441)
chr6 (186-239)||(426548-426601)
chr6 (198-239)||(7265627-7265668)
chr6 (187-239)||(8777007-8777059)
chr6 (179-239)||(34595099-34595159)
chr6 (272-319)||(426478-426525)
chr6 (196-239)||(17841623-17841666)
chr6 (187-270)||(31579229-31579311)
chr6 (164-238)||(25038106-25038180)
chr6 (165-239)||(31959111-31959184)
chr6 (291-321)||(34073276-34073306)
chr6 (278-319)||(2117134-2117175)
chr6 (206-239)||(10842524-10842557)
chr6 (189-283)||(26562664-26562759)
chr6 (203-239)||(677826-677862)
chr6 (164-237)||(4877890-4877965)
chr6 (163-239)||(7930254-7930330)
chr6 (203-239)||(7996412-7996448)
chr6 (203-239)||(8022353-8022389)
chr6 (203-239)||(10339160-10339196)
chr6 (187-239)||(16833281-16833333)
chr6 (203-239)||(17341698-17341734)
chr6 (206-238)||(21395342-21395374)
chr6 (203-239)||(21424836-21424872)
chr6 (203-287)||(34290064-34290147)
[»] chr8 (22 HSPs)
chr8 (186-287)||(22651948-22652050)
chr8 (181-287)||(29510289-29510396)
chr8 (164-232)||(25192388-25192456)
chr8 (173-239)||(926822-926888)
chr8 (186-239)||(27213519-27213572)
chr8 (164-232)||(126390-126457)
chr8 (164-239)||(13436998-13437073)
chr8 (196-239)||(31109552-31109595)
chr8 (177-239)||(24362236-24362298)
chr8 (206-239)||(39954313-39954346)
chr8 (199-239)||(31236611-31236651)
chr8 (196-272)||(37283812-37283887)
chr8 (164-239)||(4298920-4298994)
chr8 (164-239)||(11944615-11944690)
chr8 (177-239)||(4673459-4673521)
chr8 (205-239)||(27101506-27101540)
chr8 (197-239)||(34897068-34897110)
chr8 (164-282)||(11927076-11927195)
chr8 (206-239)||(13844630-13844663)
chr8 (179-239)||(2572090-2572150)
chr8 (187-239)||(20873042-20873094)
chr8 (191-287)||(29776013-29776108)
[»] chr2 (34 HSPs)
chr2 (164-275)||(21782817-21782927)
chr2 (164-228)||(33519736-33519800)
chr2 (164-239)||(20539708-20539783)
chr2 (179-270)||(4332891-4332981)
chr2 (189-239)||(21616737-21616787)
chr2 (164-237)||(19536434-19536507)
chr2 (163-236)||(23717976-23718048)
chr2 (163-236)||(24105648-24105720)
chr2 (212-270)||(1327976-1328033)
chr2 (189-287)||(36409614-36409711)
chr2 (179-264)||(18276486-18276570)
chr2 (165-230)||(21624217-21624282)
chr2 (206-319)||(19573970-19574078)
chr2 (214-287)||(44860320-44860394)
chr2 (201-289)||(18420417-18420506)
chr2 (272-319)||(19536361-19536408)
chr2 (204-239)||(37411278-37411313)
chr2 (165-239)||(38117193-38117261)
chr2 (163-237)||(14996260-14996333)
chr2 (272-318)||(18255945-18255991)
chr2 (163-238)||(21374734-21374810)
chr2 (179-269)||(28412315-28412404)
chr2 (181-239)||(31018557-31018615)
chr2 (272-318)||(34691770-34691816)
chr2 (272-318)||(34714182-34714228)
chr2 (163-284)||(2331743-2331863)
chr2 (177-238)||(4142875-4142936)
chr2 (197-238)||(21091706-21091747)
chr2 (203-239)||(896200-896236)
chr2 (190-238)||(10535794-10535842)
chr2 (187-239)||(30404884-30404936)
chr2 (207-239)||(31284041-31284073)
chr2 (283-319)||(42511322-42511358)
chr2 (206-238)||(42832311-42832343)
[»] scaffold0306 (1 HSPs)
scaffold0306 (163-239)||(13349-13425)
[»] scaffold0223 (1 HSPs)
scaffold0223 (164-319)||(20122-20279)
[»] scaffold0152 (1 HSPs)
scaffold0152 (163-239)||(21902-21978)
[»] chr1 (38 HSPs)
chr1 (187-239)||(6427323-6427375)
chr1 (179-239)||(40917716-40917776)
chr1 (180-239)||(398799-398858)
chr1 (187-239)||(2896155-2896207)
chr1 (172-318)||(10572535-10572690)
chr1 (163-238)||(5376535-5376609)
chr1 (164-239)||(5927374-5927449)
chr1 (266-319)||(48547938-48547991)
chr1 (195-239)||(12443494-12443538)
chr1 (203-239)||(17831565-17831601)
chr1 (203-239)||(36878450-36878486)
chr1 (186-278)||(1486703-1486796)
chr1 (179-279)||(38503285-38503386)
chr1 (218-321)||(44482234-44482343)
chr1 (177-232)||(48040503-48040558)
chr1 (186-264)||(1262856-1262933)
chr1 (189-239)||(9709795-9709845)
chr1 (189-239)||(34298411-34298461)
chr1 (164-238)||(39130802-39130876)
chr1 (203-239)||(19562655-19562691)
chr1 (203-238)||(609493-609528)
chr1 (196-239)||(6415035-6415078)
chr1 (164-239)||(31014993-31015068)
chr1 (196-239)||(46348417-46348460)
chr1 (187-238)||(48450622-48450673)
chr1 (203-237)||(3490426-3490460)
chr1 (205-239)||(10475011-10475045)
chr1 (173-239)||(15641064-15641130)
chr1 (203-241)||(40285686-40285724)
chr1 (186-239)||(20157384-20157437)
chr1 (206-239)||(21530681-21530714)
chr1 (209-287)||(25361881-25361960)
chr1 (209-238)||(41877505-41877534)
chr1 (206-287)||(9828036-9828118)
chr1 (179-239)||(10577769-10577829)
chr1 (196-232)||(18556497-18556533)
chr1 (206-270)||(25452152-25452215)
chr1 (164-224)||(34315663-34315722)
[»] chr3 (38 HSPs)
chr3 (164-239)||(8383207-8383282)
chr3 (177-276)||(5441029-5441128)
chr3 (200-289)||(8039818-8039908)
chr3 (179-238)||(24205076-24205135)
chr3 (164-230)||(8842280-8842346)
chr3 (195-260)||(5407261-5407325)
chr3 (179-239)||(28917966-28918026)
chr3 (179-238)||(4991002-4991061)
chr3 (173-232)||(10335327-10335386)
chr3 (164-287)||(25064859-25064981)
chr3 (164-239)||(55401025-55401100)
chr3 (165-239)||(8587055-8587129)
chr3 (188-238)||(9800014-9800064)
chr3 (165-239)||(32429414-32429488)
chr3 (187-239)||(2620087-2620139)
chr3 (179-239)||(15796328-15796388)
chr3 (187-239)||(26492239-26492291)
chr3 (196-235)||(21720746-21720785)
chr3 (283-321)||(4466538-4466576)
chr3 (291-321)||(5440965-5440995)
chr3 (189-239)||(12674535-12674585)
chr3 (283-321)||(13807237-13807275)
chr3 (163-237)||(14223889-14223962)
chr3 (196-237)||(3865592-3865633)
chr3 (196-237)||(12703989-12704030)
chr3 (207-260)||(34307794-34307846)
chr3 (179-239)||(3164059-3164119)
chr3 (203-239)||(4987325-4987361)
chr3 (203-239)||(6525714-6525750)
chr3 (196-232)||(10318075-10318111)
chr3 (165-237)||(14618732-14618804)
chr3 (195-239)||(14832080-14832124)
chr3 (203-239)||(21479107-21479143)
chr3 (206-238)||(25074781-25074813)
chr3 (203-239)||(26290360-26290396)
chr3 (187-239)||(26508083-26508135)
chr3 (283-319)||(27505334-27505370)
chr3 (203-239)||(40052321-40052357)
[»] scaffold0168 (3 HSPs)
scaffold0168 (173-319)||(21002-21149)
scaffold0168 (258-319)||(21217-21278)
scaffold0168 (258-319)||(21346-21407)
[»] scaffold0053 (1 HSPs)
scaffold0053 (179-239)||(8763-8823)
[»] scaffold0007 (1 HSPs)
scaffold0007 (179-238)||(225303-225362)
[»] scaffold0003 (1 HSPs)
scaffold0003 (179-287)||(241559-241668)
[»] scaffold0004 (1 HSPs)
scaffold0004 (197-238)||(92790-92831)
[»] scaffold0044 (1 HSPs)
scaffold0044 (204-289)||(53170-53256)
[»] scaffold0018 (2 HSPs)
scaffold0018 (167-239)||(178853-178925)
scaffold0018 (197-238)||(192284-192325)
[»] chr4 (21 HSPs)
chr4 (179-239)||(23293020-23293080)
chr4 (203-238)||(35723420-35723455)
chr4 (203-237)||(17345451-17345485)
chr4 (181-238)||(847918-847975)
chr4 (186-239)||(36635296-36635349)
chr4 (179-238)||(24343472-24343531)
chr4 (181-287)||(30982863-30982967)
chr4 (196-238)||(7012048-7012090)
chr4 (158-239)||(7670625-7670709)
chr4 (189-239)||(20521883-20521933)
chr4 (179-237)||(20633450-20633508)
chr4 (196-319)||(30298928-30299048)
chr4 (196-319)||(30327796-30327916)
chr4 (205-239)||(40613441-40613475)
chr4 (168-237)||(28084475-28084544)
chr4 (207-239)||(1747205-1747237)
chr4 (164-239)||(5775392-5775469)
chr4 (196-239)||(16184801-16184842)
chr4 (275-319)||(18844423-18844467)
chr4 (283-319)||(28470448-28470484)
chr4 (164-232)||(28720827-28720894)
[»] scaffold0652 (1 HSPs)
scaffold0652 (179-239)||(496-556)
[»] scaffold0279 (1 HSPs)
scaffold0279 (164-240)||(17903-17979)
[»] scaffold0475 (1 HSPs)
scaffold0475 (179-238)||(3281-3340)
[»] scaffold0103 (1 HSPs)
scaffold0103 (196-239)||(51793-51836)
[»] scaffold0697 (1 HSPs)
scaffold0697 (206-239)||(1636-1669)
[»] scaffold0110 (1 HSPs)
scaffold0110 (194-276)||(28830-28913)
[»] scaffold0450 (1 HSPs)
scaffold0450 (291-319)||(8564-8592)
[»] scaffold0027 (2 HSPs)
scaffold0027 (187-239)||(46655-46707)
scaffold0027 (273-321)||(46731-46778)


Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 29 - 359
Target Start/End: Complemental strand, 38816932 - 38816609
Alignment:
Q  29 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgcttgaattgaagcaataat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38816932 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgtttgaattgaagcaataat 38816833  T
Q  129 ttgagaaaatagaataattgaacggtaaccatatactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||    
T  38816832 ttgagaaaatagaataattgaacggtaaccatatactatgaagcactaatacggactccg-------cacggatactgacacgccgacaccgctaataat 38816740  T
Q  229 ttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagttatattcg 328  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38816739 ttgagaaaatcgctatatttcagtataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgattcatagttatattcg 38816640  T
Q  329 tgaatcgtgatagtgttggagactgacatct 359  Q
    |||||||||||||||||||||||||||||||    
T  38816639 tgaatcgtgatagtgttggagactgacatct 38816609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 19820503 - 19820428
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatc 19820428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 190 - 319
Target Start/End: Complemental strand, 22423895 - 22423764
Alignment:
Q  190 acacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtc-ggac 286  Q
    ||||| ||||||||||||||| | |||||  ||||||||||||||||||| | ||| |||| ||||||  ||| ||||||||| ||||||||||| ||||    
T  22423895 acacgacacggatactgacaccctgacactactaataatttgagaaaatcac-ataattcaatataattatatatgtcggtgtcgtgtcggtgtctggac 22423797  T
Q  287 atggctaattcgaggagtgtccgtgcttcatag 319  Q
    | | ||||| |||||||||||||||||||||||    
T  22423796 acgcctaatccgaggagtgtccgtgcttcatag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 22013364 - 22013431
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttg 231  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttg 22013431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 42469171 - 42469245
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||||||||| | |||||| ||| ||||| |||||||| |||||||||||||| | |||||||||||||||||    
T  42469171 ctatgaagcacggacacggacaccgaacacgacacggataatgacacgccgacacggataataatttgagaaaat 42469245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 15410532 - 15410483
Alignment:
Q  189 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  15410532 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaat 15410483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 6326384 - 6326332
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||    
T  6326384 ccggacacgacacggacactgacacgccgacatcgctagtaatttgagaaaat 6326332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 37328955 - 37328829
Alignment:
Q  162 tactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--a 259  Q
    |||||||||||||| | |||||| ||| ||||| |||||| ||||| || ||||||| || |||||||||  |||||| | | | |||| | |||||  |    
T  37328955 tactatgaagcacggacacggacaccgaacacgacacggacactgatacaccgacacagcaaataatttgtaaaaatcac-aaaattcagtgtaattaca 37328857  T
Q  260 tgtgtcggtgtggtgtcggtgtcggaca 287  Q
    ||||||||||| ||||||||||||||||    
T  37328856 tgtgtcggtgtcgtgtcggtgtcggaca 37328829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 3966492 - 3966577
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 287  Q
    ||||||| ||||||||||||||||||||||||||||| | | | |||| | ||||  ||||||||||||| ||||| ||||||||||    
T  3966492 actgacatgccgacaccgctaataatttgagaaaatcac-acaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggaca 3966577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 15382442 - 15382500
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    |||||| ||||||||| |||||| | |||||||||||||| ||||||||||||| ||||    
T  15382442 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaa 15382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 6035472 - 6035505
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaa 236  Q
    ||||||||||||||||||||||||||||||||||    
T  6035472 actgacacgccgacaccgctaataatttgagaaa 6035505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 8420075 - 8420124
Alignment:
Q  272 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 321  Q
    |||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  8420075 gtgtcggtgtcggacgcgcctaattcgaggagtatccgtgcttcatagtt 8420124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 21191143 - 21191090
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||| |||||| ||||||| |||||||| ||||||||||||| ||||||    
T  21191143 ccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatc 21191090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 2436878 - 2436939
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttg 231  Q
    |||||||||||| |||||||| ||||||||| |||      |||||||||||||||||||||||||||    
T  2436878 ctatgaagcacggatacggacaccggacacgacac------tgacacgccgacaccgctaataatttg 2436939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 9929668 - 9929720
Alignment:
Q  267 gtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
    |||| |||||||| ||||||| | ||||||||||||||||| |||||||||||    
T  9929668 gtgtcgtgtcggtatcggacacgactaattcgaggagtgtctgtgcttcatag 9929720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 17123037 - 17123073
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||| |||||||||||||||||||||||||    
T  17123037 actgacacgccaacaccgctaataatttgagaaaatc 17123073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 21522722 - 21522766
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataattt 230  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||    
T  21522722 ccggacacgacacggacactgacacgccgacacagctaataattt 21522766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 21533288 - 21533332
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataattt 230  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||    
T  21533288 ccggacacgacacggacactgacacgccgacacagctaataattt 21533332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 27144452 - 27144488
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||||||||||||||||||||| |||||    
T  27144452 actgacacgccgacaccgctaataatttgaggaaatc 27144488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 6247572 - 6247647
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||| |||| || ||||| |||||||||  ||| | ||||||||||||||||  |||||||||||| ||||||    
T  6247572 ctatgaaacacggatgcggacaccggacacgatacgcacactgacacgccgacacatctaataatttgaaaaaatc 6247647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 11685928 - 11686012
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 287  Q
    ||||||| |||||||||||||||||||||||||| |||| ||| || | | ||||  ||||||||||||| || |||||||||||||    
T  11685928 actgacatgccgacaccgctaataatttgagaaagtcgc-ataatttagtgtaattatatgtgtcggtgtcgt-tcggtgtcggaca 11686012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 14674251 - 14674294
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||    
T  14674251 cacggacactgacacgccgacacagctaataatttgaaaaaatc 14674294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 19579683 - 19579726
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||    
T  19579683 cacggacactgatacgccgacacagctaataatttgagaaaatc 19579726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 21137654 - 21137713
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||| ||||||||  |||||| ||||||||||||||| || ||||||| |||||||||    
T  21137654 acggacaccggacacaacacggacactgacacgccgacatcggtaataatctgagaaaat 21137713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 34879332 - 34879375
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||    
T  34879332 cacggatacggacacgccggcaccgctaaaaatttgagaaaatc 34879375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 5873590 - 5873548
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||    
T  5873590 cacggacactgacatgccgacacctctaataatttgagaaaat 5873548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Complemental strand, 24906280 - 24906250
Alignment:
Q  291 ctaattcgaggagtgtccgtgcttcatagtt 321  Q
    |||||||||||||||||||||||||||||||    
T  24906280 ctaattcgaggagtgtccgtgcttcatagtt 24906250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 238
Target Start/End: Original strand, 27932229 - 27932259
Alignment:
Q  208 cacgccgacaccgctaataatttgagaaaat 238  Q
    |||||||||||||||||||||||||||||||    
T  27932229 cacgccgacaccgctaataatttgagaaaat 27932259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 28588742 - 28588708
Alignment:
Q  205 tgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||| ||||||||||||||||||    
T  28588742 tgacacgccgacaccggtaataatttgagaaaatc 28588708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 36642849 - 36642803
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataatttga 232  Q
    ||||||||| |||||| |||||||||||||||| | |||||||||||    
T  36642849 ccggacacgacacggacactgacacgccgacacagttaataatttga 36642803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 19552626 - 19552577
Alignment:
Q  190 acacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||| |||||| |||||||||||||||| | ||||||||||| ||||||    
T  19552626 acacgacacggacactgacacgccgacacagttaataatttgaaaaaatc 19552577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 30135264 - 30135336
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    |||||||||||  |||||||| | ||||||| ||| ||||| |||||||||||||  |||||||||||| ||||    
T  30135264 ctatgaagcacatatacggacac-ggacacgacacagataccgacacgccgacacaactaataatttgaaaaaa 30135336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 32767004 - 32766975
Alignment:
Q  212 ccgacaccgctaataatttgagaaaatcgc 241  Q
    ||||||||||||||||||||||||||||||    
T  32767004 ccgacaccgctaataatttgagaaaatcgc 32766975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 13287493 - 13287433
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||| |||||| ||| ||||| |||||| | ||||||||||| ||||||    
T  13287493 acggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatc 13287433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 31084312 - 31084348
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  31084312 actgacacgccgacacagctaataatttgaaaaaatc 31084348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 41995460 - 41995543
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 287  Q
    ||||||||||||||||  ||||||||| || |||||| | ||| |||| | |||||| |||||||||  || |||||||||||||    
T  41995460 actgacacgccgacacaactaataattcgaaaaaatcac-ataattcaatgtaattaagtgtcggtgccgtatcggtgtcggaca 41995543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 27944991 - 27945065
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||||||||| |||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 24105629 - 24105702
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||||||||| ||||||| | |||||||| |||||| |||||||||||||||| ||||||||||||| |||||    
T  24105629 ctatgaagcacggatacgga-tacggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 24105702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 29787435 - 29787354
Alignment:
Q  207 acacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatg 289  Q
    ||||||||||||||||||||||||||||||||| | ||| |||| | ||||||||||| |||||  ||||||||| |||||||    
T  29787435 acacgccgacaccgctaataatttgagaaaatcac-ataattcagtgtaattatgtgttggtgtaatgtcggtgttggacatg 29787354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 11722185 - 11722132
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||    
T  11722185 ccggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatc 11722132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 24339605 - 24339716
Alignment:
Q  177 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtg 274  Q
    |||||||| ||||||||| || ||| | |||||||||||||| ||||||||||||| |||||| | ||| |||| | |||||  | |||||||||| |||    
T  24339605 atacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaagtgtcggtgtcgtg 24339703  T
Q  275 tcggtgtcggaca 287  Q
    |||||||||||||    
T  24339704 tcggtgtcggaca 24339716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 19206025 - 19206107
Alignment:
Q  189 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 270  Q
    |||||| |||||| ||  ||||||||||||||||||||||||||||||||| | ||| |||||||||||  |||||||||||||    
T  19206025 gacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcac-ataattcattataattatatgtgtcggtgt 19206107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 32308109 - 32308194
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 287  Q
    ||||||||||||||||||||||||||||||||||||| | ||| |||| | ||||  |||||||| |||| |||||||||| |||||    
T  32308109 actgacacgccgacaccgctaataatttgagaaaatcac-ataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgttggaca 32308194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 11700798 - 11700909
Alignment:
Q  209 acgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcgg--acatggctaattcgaggagtgt 306  Q
    |||| ||||||| ||||||||||| |||||| | ||| |||| | |||||||||||| |||| || ||||||||||  ||| ||||||| ||||||||||    
T  11700798 acgctgacaccgttaataatttgacaaaatcac-ataattcaatgtaattatgtgtctgtgttgtctcggtgtcggacacacggctaatccgaggagtgt 11700896  T
Q  307 ccgtgcttcatag 319  Q
    || || |||||||    
T  11700897 ccctgattcatag 11700909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 1433419 - 1433479
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||| ||||| |||||| | |||||||||||||||| ||||||||||||||||||    
T  1433419 acggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaaaatc 1433479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 319
Target Start/End: Complemental strand, 7328805 - 7328639
Alignment:
Q  159 atatactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat- 257  Q
    ||||||||||||||||| |||||||| ||| ||||| ||| || | | ||||| ||| || |||||||||||||||||||  | ||| || | | ||||     
T  7328805 atatactatgaagcacggatacggacaccgaacacgacacagacattaacacgtcgatactgctaataatttgagaaaataac-ataatttagtgtaatt 7328707  T
Q  258 -tatgtgtcggtgtggtgtc-----ggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
     ||||||||||||| |||||     ||||||||||| | ||||| ||| |||||| ||||||||||||    
T  7328706 atatgtgtcggtgtcgtgtcgtgttggtgtcggacacgcctaatccgatgagtgttcgtgcttcatag 7328639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 2034392 - 2034462
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 235  Q
    |||||||||||| ||||||| | | |||||| |||||||||| ||||| ||||||| |||||||||||||||    
T  2034392 ctatgaagcacggatacgga-tactgacacgacacggatacttacacgtcgacaccactaataatttgagaa 2034462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 2425818 - 2425767
Alignment:
Q  188 ggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||    
T  2425818 ggacacgacacagatactgacacgccggcaccgttaataatttgagaaaatc 2425767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 43027578 - 43027503
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||| || ||||| | ||||||| |||||| ||||||||| |||| | ||||||||||||| ||||||    
T  43027578 ctatgaagcacggatgcggacactggacacgacacggacactgacacggcgacccagctaataatttgaaaaaatc 43027503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 43249958 - 43250017
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||| ||||||| | |||||| |||||||||||||||| | |||||||||||||||||    
T  43249958 acggacaccggacaagacacggacactgacacgccgacacggataataatttgagaaaat 43250017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 8046103 - 8046061
Alignment:
Q  197 acggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  8046103 acggatactgacacgccaacaccactaataatttgagaaaatc 8046061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 22484014 - 22484082
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 270  Q
    |||||||||||||||||||||||||||| ||||||| || ||| |||| ||||||  |||||||||||||    
T  22484014 actgacacgccgacaccgctaataattttagaaaattgc-ataattcagtataattatatgtgtcggtgt 22484082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 23191879 - 23191921
Alignment:
Q  197 acggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  23191879 acggacactgatacgccgacaccgctaataatttgagaaaatc 23191921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 26733279 - 26733329
Alignment:
Q  189 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||| ||||||||| |||||||||||||||||||| ||||||    
T  26733279 gacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatc 26733329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 30731031 - 30731104
Alignment:
Q  208 cacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtc 282  Q
    |||||||||||||| ||||||||||||||||| | ||| |||| | ||||| ||||||||||| |||| ||||||    
T  30731031 cacgccgacaccgcgaataatttgagaaaatcac-ataattcagtgtaattgtgtgtcggtgtcgtgttggtgtc 30731104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 11072290 - 11072362
Alignment:
Q  206 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggt 279  Q
    ||||||||||||||| ||||||||||| ||||    |||| |||| ||||||||||||||||||| ||||||||    
T  11072290 gacacgccgacaccgataataatttgaaaaaaata-tataattcaatataattatgtgtcggtgtcgtgtcggt 11072362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 49107795 - 49107844
Alignment:
Q  188 ggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    ||||||| ||||||  ||||||| ||||||||||||||||||||||||||    
T  49107795 ggacacgacacggactctgacacaccgacaccgctaataatttgagaaaa 49107844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 20549780 - 20549816
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||| ||||||||||||||||||||||||||||    
T  20549780 actgacacaccgacaccgctaataatttgagaaaatc 20549816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 2948669 - 2948708
Alignment:
Q  200 gatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  2948669 gatactgacacgccgacaccgctgataattttagaaaatc 2948708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 6630982 - 6630897
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 287  Q
    ||||||||||||||||| |||||||||||||||| || || || |||| | ||||  ||||||||| ||| |||| |||||||||||    
T  6630982 actgacacgccgacaccactaataatttgagaaagtcact-taattcagtgtaattatatgtgtcgatgtcgtgttggtgtcggaca 6630897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 21828482 - 21828439
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||||||||||||||| || |||||||||||||||    
T  21828482 cacggacactgacacgccgacaccgttagtaatttgagaaaatc 21828439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 28155563 - 28155594
Alignment:
Q  207 acacgccgacaccgctaataatttgagaaaat 238  Q
    ||||||||||||||||||||||||||||||||    
T  28155563 acacgccgacaccgctaataatttgagaaaat 28155594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 598160 - 598233
Alignment:
Q  165 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||  |||||| || |||| | |||||| ||||||||  |||||||||||||||||| ||||||||    
T  598160 tatgaagcacgac-acggacaccagacatgacacggacactgacacatcgacaccgctaataatttaagaaaatc 598233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 5235960 - 5236010
Alignment:
Q  188 ggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||||| ||| || ||||||||| |||||||||||||||||| |||||||    
T  5235960 ggacacgacacagacactgacacgtcgacaccgctaataatttaagaaaat 5236010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 9933282 - 9933347
Alignment:
Q  221 ctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 287  Q
    |||||||||||| |||||| | |||||||| || | ||||||||| |||| ||||||||||||||||    
T  9933282 ctaataatttgaaaaaatcac-atatttcagtaaacttatgtgtcagtgtcgtgtcggtgtcggaca 9933347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 20545312 - 20545270
Alignment:
Q  197 acggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||| |||||||| |||||||||||||||||| ||||||    
T  20545312 acggatacggacacgccaacaccgctaataatttgaaaaaatc 20545270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 26329476 - 26329418
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    |||||| | ||||||| ||| || ||||||||||||||| || ||||||||||||||||    
T  26329476 acggacactggacacgacacagacactgacacgccgacatcgttaataatttgagaaaa 26329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 4017879 - 4017830
Alignment:
Q  188 ggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    ||||||| |||||| || ||||||||||||| | ||||||||||||||||    
T  4017879 ggacacgacacggacaccgacacgccgacacggataataatttgagaaaa 4017830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 320
Target Start/End: Original strand, 17852091 - 17852120
Alignment:
Q  291 ctaattcgaggagtgtccgtgcttcatagt 320  Q
    ||||||||||||||||||||||||||||||    
T  17852091 ctaattcgaggagtgtccgtgcttcatagt 17852120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 25791642 - 25791675
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaa 236  Q
    ||||||||||||||||||||||| ||||||||||    
T  25791642 actgacacgccgacaccgctaattatttgagaaa 25791675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 11061162 - 11061110
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||| ||| |||||| |||||||| ||||||| ||||||||||||| ||||||    
T  11061162 cggatacgacacggacactgacacaccgacacagctaataatttgaaaaaatc 11061110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Original strand, 15680900 - 15680928
Alignment:
Q  291 ctaattcgaggagtgtccgtgcttcatag 319  Q
    |||||||||||||||||||||||||||||    
T  15680900 ctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 17851396 - 17851456
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||| || |||||| |||||  ||| |||||||||||||| ||||||||    
T  17851396 acggacaccggacacgacatggataccgacacatcgataccgctaataattttagaaaatc 17851456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 22868031 - 22868067
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  22868031 actgacacgccgacaccactaataatatgagaaaatc 22868067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 10294079 - 10294181
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcg 283  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||| |||||||| | ||||  ||||||||||||| |||| |||||||    
T  10294079 ccggacacgacacggatactgacatgccgataccgctaataatttgagataatcgc-atatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcg 10294177  T
Q  284 gaca 287  Q
    ||||    
T  10294178 gaca 10294181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 9027143 - 9027203
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  9027143 acggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatc 9027203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 853968 - 853893
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||| |||| |||||||| ||||||||| ||||||| |||||||||||||||  |||||||||||| ||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatc 853893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 16766662 - 16766771
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtc 276  Q
    |||||| ||||||||| || ||| |||||||||||||||| ||||||||||||| |||||| | ||| |||| | |||||  | |||||||||| |||||    
T  16766662 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaagtgtcggtgtcgtgtc 16766760  T
Q  277 ggtgtcggaca 287  Q
    |||||||||||    
T  16766761 ggtgtcggaca 16766771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 5000720 - 5000660
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||| | |||||||||||||||| ||||||||||||||||| |||||||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgagaaaatc 5000660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 319
Target Start/End: Complemental strand, 5732604 - 5732474
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcgg 278  Q
    |||||| | ||||||| || ||| |||||||||||||||||| |||||||||||||||||| | |||||| | | ||||||| |         |||||||    
T  5732604 acggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcac-atattttagtgtaattatat---------gtgtcgg 5732515  T
Q  279 tgtcggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
    ||||||||| | ||||| |||||||||||| ||||||||||    
T  5732514 tgtcggacacgcctaatccgaggagtgtccatgcttcatag 5732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 8365628 - 8365560
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 232  Q
    |||||||||||| |||||||| || |||||| |||||| ||||||||||||||||  ||||||||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttga 8365560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 12696277 - 12696348
Alignment:
Q  166 atgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||||||| |||||||| | ||||||| |||||| |||||||||||||||| ||||||||||||| |||||    
T  12696277 atgaagcacggatacggacac-ggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 12696348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 319
Target Start/End: Complemental strand, 8805656 - 8805524
Alignment:
Q  189 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggt---gtcgga 285  Q
    |||||| ||| || || |||||| || ||| |||||||||||||||||||| | ||| || | | ||||||||||||||||| ||||| |    || |||    
T  8805656 gacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcac-ataatttagtgtaattatgtgtcggtgtagtgtcagacacgtggga 8805558  T
Q  286 catggctaattcgaggagtgtccgtgcttcatag 319  Q
    |||| ||||| |||||||||||||||||||||||    
T  8805557 catgcctaatccgaggagtgtccgtgcttcatag 8805524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 287
Target Start/End: Complemental strand, 9107464 - 9107355
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtc 276  Q
    |||||| ||||||||| |||||| ||| |||||||||||| ||||||||||||| |||||| | | | |||| | |||||  | |||||||||| |||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcac-aaaattcagtgtaattacaagtgtcggtgtcgtgtc 9107366  T
Q  277 ggtgtcggaca 287  Q
    |||||||||||    
T  9107365 ggtgtcggaca 9107355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 9629357 - 9629408
Alignment:
Q  188 ggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  9629357 ggacacgacacggatattgacacgccgacaccgccaataatttgagaaaatc 9629408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 30866253 - 30866178
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||| |||||||||||| ||||||| | ||| || || ||||| || |||||||||||||||||||||||||    
T  30866253 ctatgaagtacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatc 30866178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 6389693 - 6389767
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||||||||| | || ||| ||||||||| |||||| ||| |||||||||||| | |||||||||||||||||    
T  6389693 ctatgaagcacggacacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaat 6389767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 9658854 - 9658904
Alignment:
Q  189 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||| |||||||||||||||||||||||||||| ||||||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaatc 9658904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 19040339 - 19040377
Alignment:
Q  201 atactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19040339 atactgacacgccgacaccgctaataatttgagaaaatc 19040377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 3398569 - 3398637
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 232  Q
    |||||||||| | ||||||||  || ||||| |||||| |||||||||||||||| |||||||||||||    
T  3398569 ctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataatttga 3398637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 7938081 - 7938141
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||| || ||| |||||||||||||||| ||||||||||||| ||||||    
T  7938081 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatc 7938141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 13851712 - 13851760
Alignment:
Q  190 acacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  13851712 acacgacacggacactgacacgtcgacaccgctaataatttgagaaaat 13851760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 7977924 - 7977865
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||| | ||||||| || |||||||||||||||||||| ||||||||||||| |||||    
T  7977924 acggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaat 7977865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 20371187 - 20371144
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  20371187 cacggacattgacacgccgacaccgctaataatttgagaaaatc 20371144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 34073441 - 34073337
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtc 276  Q
    |||||| | ||||||| |||||| ||||||| ||| ||| ||||||||||||||||||||| | ||| |||| | ||||  |||| |||||||| |||||    
T  34073441 acggacactggacacgacacggacactgacatgccaacatcgctaataatttgagaaaatctc-ataattcagtgtaattatatgggtcggtgtcgtgtc 34073343  T
Q  277 ggtgtc 282  Q
    ||||||    
T  34073342 ggtgtc 34073337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 426601 - 426548
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||| |||||| |||||||||||||||| | ||||||||||| ||||||    
T  426601 ccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatc 426548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 7265668 - 7265627
Alignment:
Q  198 cggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  7265668 cggacactgacacgccaacaccgctaataatttgagaaaatc 7265627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 8777059 - 8777007
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||| |||||| ||||||||||||||||  |||||||||||| ||||||    
T  8777059 cggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatc 8777007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 34595099 - 34595159
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||| |||||| | ||||||||||||||  |||||||||||| ||||||    
T  34595099 acggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatc 34595159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 426525 - 426478
Alignment:
Q  272 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
    |||||||||||||||| | |||||  ||||||||||||||||||||||    
T  426525 gtgtcggtgtcggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 17841666 - 17841623
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||    
T  17841666 cacggacactgacacgccgacacagctaataatttgaaaaaatc 17841623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 31579311 - 31579229
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 270  Q
    |||||||| || ||| |||| ||| || |||||| |||||||||||||||||| | ||| |||| | |||||||||||||||||    
T  31579311 cggacacgacatggacactgccacaccaacaccgttaataatttgagaaaatcac-ataattcagtgtaattatgtgtcggtgt 31579229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 25038180 - 25038106
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||||||||| ||||||||   | | ||| ||| ||||||||||||  ||||||| |||||||||||||||||    
T  25038180 ctatgaagcacggatacggacattgaatacgacacagatactgacacgttgacaccgttaataatttgagaaaat 25038106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 31959111 - 31959184
Alignment:
Q  165 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||| |||||||| | ||||| | |||| | |||||||||||| ||| ||||||||||||| ||||||    
T  31959111 tatgaagcacggatacggacac-ggacatgacacgaacactgacacgccgtcacagctaataatttgaaaaaatc 31959184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Complemental strand, 34073306 - 34073276
Alignment:
Q  291 ctaattcgaggagtgtccgtgcttcatagtt 321  Q
    |||||||||||||||||||||||||||||||    
T  34073306 ctaattcgaggagtgtccgtgcttcatagtt 34073276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 2117134 - 2117175
Alignment:
Q  278 gtgtcggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  2117134 gtgtcggacatgcctaatcggaggagtgtccgtgcttcatag 2117175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 10842524 - 10842557
Alignment:
Q  206 gacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||||||||||||||||| ||||||    
T  10842524 gacacgccgacaccgctaataatttgaaaaaatc 10842557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 26562664 - 26562759
Alignment:
Q  189 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcg 283  Q
    ||||| ||||| | || ||||||||||||| ||||| |||||||||||||| | ||| |||| | ||||  ||||||||| ||| ||||||||||||    
T  26562664 gacaccgcacgaacacggacacgccgacactgctaaaaatttgagaaaatcac-ataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtcg 26562759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 677826 - 677862
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||| | ||||||||||||||||||    
T  677826 actgacacgccgacactgttaataatttgagaaaatc 677862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 4877890 - 4877965
Alignment:
Q  164 ctatgaagcacgaatacggactc--cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    |||||||||||  |||||||| |  || ||||| |||||||| |||||| ||||||| ||||||||||||| ||||    
T  4877890 ctatgaagcacagatacggacacgccgaacacgacacggatagtgacacaccgacacagctaataatttgaaaaaa 4877965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 7930254 - 7930330
Alignment:
Q  163 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||| | |||| ||| |||||||| | ||||| ||||||| ||||||||   ||||||||||| ||||||    
T  7930254 actatgaagcatggatacagacaccggacacagaacggacactgacatgccgacacaattaataatttgaaaaaatc 7930330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 7996448 - 7996412
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  7996448 actgacatgccgacactgctaataatttgagaaaatc 7996412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 8022353 - 8022389
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  8022353 actgacatgccgacactgctaataatttgagaaaatc 8022389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 10339196 - 10339160
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||||||||| | |||||||||||||||    
T  10339196 actgacacgccgacaccgcgattaatttgagaaaatc 10339160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 16833281 - 16833333
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||| ||| || ||||||||||||||||  |||||||||||| ||||||    
T  16833281 cggacacgacacagacactgacacgccgacacaactaataatttgaaaaaatc 16833333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 17341734 - 17341698
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  17341734 actgacacgccgacaccgttaataatttgataaaatc 17341698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 21395374 - 21395342
Alignment:
Q  206 gacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||||| ||||||||||||||||||||||||    
T  21395374 gacacgccaacaccgctaataatttgagaaaat 21395342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 21424872 - 21424836
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  21424872 actgacacgccaacaccgctaataatttgaaaaaatc 21424836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 34290147 - 34290064
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 287  Q
    ||||||| ||||||||  ||||||||||| || |||| | ||| |||| | ||||||||||||||||| ||||| ||||| ||||    
T  34290147 actgacatgccgacacaactaataatttgcgagaatcac-ataattcagtgtaattatgtgtcggtgtcgtgtcagtgtccgaca 34290064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 22651948 - 22652050
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcggtgtcg 283  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||| |||||| | ||| |||| |||||||  | |||||||||| ||||||||||||    
T  22651948 ccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcac-ataattcaatataattacaagtgtcggtgtcgtgtcggtgtcg 22652046  T
Q  284 gaca 287  Q
    ||||    
T  22652047 gaca 22652050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 29510396 - 29510289
Alignment:
Q  181 ggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcgg 278  Q
    |||| ||||||||| |||||| |||||||||||||||| ||||||||||||| |||||| | | | |||| |||||||  | |||||||||| |||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcac-aaaattcagtataattacaagtgtcggtgtagtgtcgg 29510298  T
Q  279 tgtcggaca 287  Q
    |||||||||    
T  29510297 tgtcggaca 29510289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 25192456 - 25192388
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 232  Q
    |||||||||||||||||||||  ||||||||  ||||| |||||||||||||||| |||||||||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataatttga 25192388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 926888 - 926822
Alignment:
Q  173 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||| |||||| ||||||||| |||||| ||||||||||| ||||  |||||||||||||||||||    
T  926888 acgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaatc 926822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 27213519 - 27213572
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||    
T  27213519 ccggacacgacacggatacagacacgccgacactgctaataatttcagaaaatc 27213572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 126457 - 126390
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 232  Q
    |||||||||||| ||||| || | |||||||  ||||||||||||||||| ||||||||||||||||||    
T  126457 ctatgaagcacggatacgcacac-ggacacgatacggatactgacacgccaacaccgctaataatttga 126390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 13437073 - 13436998
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||| | | |||| ||||||| | || ||| |||||||||||||||| ||||||||||||| ||||||    
T  13437073 ctatgaagcacggacatggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatc 13436998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 31109595 - 31109552
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  31109595 cacggacactgacacgccgacaccgttaataatttgagaaaatc 31109552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 24362298 - 24362236
Alignment:
Q  177 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||| ||||| ||| ||| || || ||||||||||||||||||||||||||||| ||||    
T  24362298 atacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatc 24362236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 39954346 - 39954313
Alignment:
Q  206 gacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||||||||||||||||||||||||    
T  39954346 gacacgccgacaccgctaataatttgagaaaatc 39954313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 31236651 - 31236611
Alignment:
Q  199 ggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  31236651 ggatacggacacgccgacactgctaataatttgagaaaatc 31236611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 37283887 - 37283812
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtgg 272  Q
    |||||| ||||||| || | ||||||||||||| |||||||||| | ||| |||| | |||||||||||||||||||    
T  37283887 cacggacactgacatgcgggcaccgctaataatctgagaaaatcac-ataattcagtgtaattatgtgtcggtgtgg 37283812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 4298994 - 4298920
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||| ||| |||| | ||||||| ||| |||||| |||||||||||| | ||||||||||| ||||||    
T  4298994 ctatgaagcacggatatggacac-ggacacgacacagatactaacacgccgacacagttaataatttgaaaaaatc 4298920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 11944615 - 11944690
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||  |||||||| ||  ||||| ||||||| || |||||||||||| | ||||||||||| ||||||    
T  11944615 ctatgaagcacagatacggacaccaaacacgacacggatgctaacacgccgacactgttaataatttgataaaatc 11944690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 4673521 - 4673459
Alignment:
Q  177 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||  |||||||| ||| || |||||||||||||||| | ||||||||||| ||||||    
T  4673521 atacggacatcggacacgacacagacactgacacgccgacacagataataatttgaaaaaatc 4673459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 27101506 - 27101540
Alignment:
Q  205 tgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||||||||||||||| ||||||    
T  27101506 tgacacgccgacaccgctaataatttgaaaaaatc 27101540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 34897068 - 34897110
Alignment:
Q  197 acggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||| || |||||| |||||||||||||||||||||||||||    
T  34897068 acggacacagacacgtcgacaccgctaataatttgagaaaatc 34897110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 11927195 - 11927076
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatg 261  Q
    |||||||||||  |||||||| ||  ||||| ||||||| || | |||||||||| | ||||||||||| |||||| | ||| |||| | ||||  ||||    
T  11927195 ctatgaagcacagatacggacaccaaacacgacacggatgctaatacgccgacactgttaataatttgataaaatcac-ataattcagtgtaattatatg 11927097  T
Q  262 tgtcggtgtggtgtcggtgtc 282  Q
    ||||||||| |||| ||||||    
T  11927096 tgtcggtgtcgtgttggtgtc 11927076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 13844663 - 13844630
Alignment:
Q  206 gacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||| ||||||||||||||||||||    
T  13844663 gacacgccgacactgctaataatttgagaaaatc 13844630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 2572150 - 2572090
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| | ||||||| ||||||||| |||||| ||||||  |||||||||||| ||||||    
T  2572150 acggacactggacacgacacggataccgacacgtcgacacacctaataatttgaaaaaatc 2572090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 20873042 - 20873094
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||| |||||| |||||||||||||||  | ||||||||||| ||||||    
T  20873042 cggacacgacacggacactgacacgccgacatagataataatttgaaaaaatc 20873094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 29776013 - 29776108
Alignment:
Q  191 cacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 287  Q
    |||| |||||| | ||||| | |||||| |||||||||||||||||||| |  || |||| ||||||||| |||||||||   ||| ||||||||||    
T  29776013 cacgacacggacattgacaagtcgacactgctaataatttgagaaaatcac-gtaattcagtataattatatgtcggtgttaagtcagtgtcggaca 29776108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 275
Target Start/End: Complemental strand, 21782927 - 21782817
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtg 263  Q
    ||||||||||||||||| ||| | ||||||| |||  | |||||||||||||||| |||||||||||||||||||| | ||| |||| | ||||||||||    
T  21782927 ctatgaagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcac-ataattcagtgtaattatgtg 21782829  T
Q  264 tcggtgtggtgt 275  Q
     |||||| ||||    
T  21782828 ccggtgtcgtgt 21782817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 33519736 - 33519800
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataat 228  Q
    |||||||||||| |||||||| ||||||||| | ||||||||||||| |||||||||||||||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 33519800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 20539783 - 20539708
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||| |||||||| | ||||||| |||||| ||||||||| |||||| ||||||||||||| ||||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatc 20539708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 4332891 - 4332981
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 270  Q
    |||||| ||||||||||||| |||||| ||| |||||||| | |||||||||| ||||||| | ||| |||| | |||||||||||||||||    
T  4332891 acggacaccggacacggcacagatacttacatgccgacactgataataatttgggaaaatcac-ataattcaatgtaattatgtgtcggtgt 4332981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 21616737 - 21616787
Alignment:
Q  189 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  21616737 gacacgacacggacacggacacgccgacaccgctaataatttgagaaaatc 21616787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 19536507 - 19536434
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    |||||||||||  |||||||| ||||||||| |||||| | ||||||||||||||  |||||||||||| ||||    
T  19536507 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaa 19536434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 23717976 - 23718048
Alignment:
Q  163 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaa 236  Q
    ||||||||||||| |||| ||| | ||||| | |||||| |||||||| |||||||||||||||||||||||||    
T  23717976 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaaa 23718048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 24105648 - 24105720
Alignment:
Q  163 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaa 236  Q
    ||||||||||||| |||| ||| | ||||| | |||||| |||||||| |||||||||||||||||||||||||    
T  24105648 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaaa 24105720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 1327976 - 1328033
Alignment:
Q  212 ccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 270  Q
    ||||||||||||||||||||||||||||  || | |||| |||||||||||||||||||    
T  1327976 ccgacaccgctaataatttgagaaaatc-ataaaattcagtataattatgtgtcggtgt 1328033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 36409711 - 36409614
Alignment:
Q  189 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 287  Q
    |||||| |||||||||| ||| |||||||||||| ||||||||| |||||| | ||| || | | |||||||||||||||||  ||| |||||| ||||    
T  36409711 gacacgacacggatactcacatgccgacaccgctgataatttgaaaaaatcac-ataatttagtgtaattatgtgtcggtgtcatgttggtgtctgaca 36409614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 18276486 - 18276570
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgt 264  Q
    |||||| |||||||||  || || ||||| | ||||||||||||||||||||||||||||| || || |||| | |||||||||||    
T  18276486 acggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatcact-taattcagtgtaattatgtgt 18276570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 21624217 - 21624282
Alignment:
Q  165 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataattt 230  Q
    |||||||| || |||||||| ||| ||||| ||| || |||||||||||||||| |||||||||||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattt 21624282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 319
Target Start/End: Original strand, 19573970 - 19574078
Alignment:
Q  206 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtg 305  Q
    ||||||||||||||| ||||||||| |||||||  | ||| |||| | |||||||     ||||  ||||||||||||||||   |||||||||||||||    
T  19573970 gacacgccgacaccgataataatttaagaaaataac-ataattcagtgtaattata----ggtggcgtgtcggtgtcggacacacctaattcgaggagtg 19574064  T
Q  306 tccgtgcttcatag 319  Q
    ||| ||||||||||    
T  19574065 tccatgcttcatag 19574078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 44860320 - 44860394
Alignment:
Q  214 gacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 287  Q
    |||||||||||||||||||||||||||| ||| |||| | ||||  ||||||||||||| |||| ||||| |||||    
T  44860320 gacaccgctaataatttgagaaaatcgc-ataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggaca 44860394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 18420506 - 18420417
Alignment:
Q  201 atactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggacatg 289  Q
    ||||||||||||| |||| |||||||||||||||||||| | ||| |||| |  ||||||  |||||||||| |||||  |||||||||||    
T  18420506 atactgacacgccaacactgctaataatttgagaaaatcac-ataattcaatgcaattataagtgtcggtgttgtgtccatgtcggacatg 18420417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 19536408 - 19536361
Alignment:
Q  272 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  19536408 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 19536361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 37411313 - 37411278
Alignment:
Q  204 ctgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||||||||||||||||||||||||||    
T  37411313 ctgacatgccgacaccgctaataatttgagaaaatc 37411278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 38117261 - 38117193
Alignment:
Q  165 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||| |||||||| ||||||||| |||      |||||||||||||| ||||||||||||| ||||||    
T  38117261 tatgaagcacggatacggacaccggacacgacac------tgacacgccgacacagctaataatttgaaaaaatc 38117193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 14996333 - 14996260
Alignment:
Q  163 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    ||||||||||||| |||||||| | | ||| | |||||| ||||||| |||||||| ||||||||||||| ||||    
T  14996333 actatgaagcacggatacggacgcag-acatgacacggacactgacaagccgacacagctaataatttgaaaaaa 14996260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 18255991 - 18255945
Alignment:
Q  272 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 318  Q
    |||||||||||||||| | ||||| | ||||||||||||||||||||    
T  18255991 gtgtcggtgtcggacacgcctaatccaaggagtgtccgtgcttcata 18255945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 21374810 - 21374734
Alignment:
Q  163 actatgaagcacgaatacggactccggacacgg--cacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||||||||||| |||||||| | |||||| |  |||||| ||| |||||||||||| ||||||||||||| |||||    
T  21374810 actatgaagcacggatacggacac-ggacaccggacacggacactaacacgccgacacagctaataatttgaaaaaat 21374734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 28412315 - 28412404
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtg 269  Q
    |||||| || |||||| |||||| ||| ||||| | |||||| ||||||||||| |||||| | ||| |||| | ||||||||||||||||    
T  28412315 acggacaccagacacgacacggacactaacacgtcaacaccgttaataatttgataaaatcac-ataattcagtgtaattatgtgtcggtg 28412404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 31018557 - 31018615
Alignment:
Q  181 ggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||| ||||| ||| || ||| ||||||||||| |||||||||||||||| ||||||||    
T  31018557 ggacaccggatacgacatggacactgacacgccaacaccgctaataatttcagaaaatc 31018615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 34691816 - 34691770
Alignment:
Q  272 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 318  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34691816 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34691770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 34714228 - 34714182
Alignment:
Q  272 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 318  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34714228 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34714182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 2331743 - 2331863
Alignment:
Q  163 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgt 262  Q
    ||||||||||||| | || |||  || || || |||||| | ||||||||  |||||  |||||||||||||||||| | ||| |||| | || ||||||    
T  2331743 actatgaagcacggacacagacatcgaacgcgacacggacattgacacgcaaacaccattaataatttgagaaaatcac-ataattcagtgtatttatgt 2331841  T
Q  263 gtcggtgtggtgtcggtgtcgg 284  Q
    |||||||| ||||| |||||||    
T  2331842 gtcggtgtcgtgtcagtgtcgg 2331863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 4142936 - 4142875
Alignment:
Q  177 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||||| ||| ||||| | |||| ||||||||||||||||| |||| ||||| |||||||    
T  4142936 atacggacaccgaacacgacccggacactgacacgccgacaccactaacaatttaagaaaat 4142875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 21091706 - 21091747
Alignment:
Q  197 acggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||| |||||||| ||||||||||||||||||| |||||||    
T  21091706 acggacactgacacaccgacaccgctaataatttaagaaaat 21091747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 896200 - 896236
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  896200 actgacacgccgacactgctaatagtttgagaaaatc 896236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 10535842 - 10535794
Alignment:
Q  190 acacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||| ||| |||||| | |||||||||||| |||||||||||||||||    
T  10535842 acacgacacagatactaatacgccgacaccgataataatttgagaaaat 10535794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 30404936 - 30404884
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| | |||||| |||||||||||||||| | ||||||||||| ||||||    
T  30404936 cggacatgacacggacactgacacgccgacacggttaataatttgaaaaaatc 30404884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 31284041 - 31284073
Alignment:
Q  207 acacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||| ||||||||||||||||||||    
T  31284041 acacgccgacactgctaataatttgagaaaatc 31284073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 42511358 - 42511322
Alignment:
Q  283 ggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  42511358 ggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 42832343 - 42832311
Alignment:
Q  206 gacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||| |||||||||||||||||||||||||||    
T  42832343 gacacaccgacaccgctaataatttgagaaaat 42832311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 13349 - 13425
Alignment:
Q  163 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||| |||||||| ||||| | | |||||| ||||||||||||||||  |||||||||||||||||||    
T  13349 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 13425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 319
Target Start/End: Original strand, 20122 - 20279
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atg 261  Q
    |||||||||||  |||||||| ||||||||| |||||| | |||||||||||||| ||||||||||||| |||||| | ||| |||| | |||||  | |    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaag 20220  T
Q  262 tgtcggtgtggtgtcggtgtcggacatggctaattcgaggagt---gtccgtgcttcatag 319  Q
    |||| |||| |||||||||  ||||| | ||||| ||||||||   |||||||||||||||    
T  20221 tgtcagtgtcgtgtcggtg--ggacacgcctaatccgaggagtacagtccgtgcttcatag 20279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 21978 - 21902
Alignment:
Q  163 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||| |||||||| ||||| | | |||||| ||||||||||||||||  |||||||||||||||||||    
T  21978 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 21902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 6427323 - 6427375
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  6427323 cggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatc 6427375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 40917716 - 40917776
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatc 40917776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 398858 - 398799
Alignment:
Q  180 cggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatc 398799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 2896207 - 2896155
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  2896207 cggacacaacacggacactgacacgccgacaccgctaataatttgagaaaatc 2896155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 318
Target Start/End: Complemental strand, 10572690 - 10572535
Alignment:
Q  172 cacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtg 269  Q
    |||| |||||||| ||||||||| || | | ||||||||||||||||| ||||||||||||||||||| | ||| |||  | |||||  |||||||||||    
T  10572690 cacggatacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcac-ataattcggtgtaattaaatgtgtcggtg 10572592  T
Q  270 tggtgtcggtgtc--------ggacatggctaattcgaggagtgtccgtgcttcata 318  Q
    | |||| ||||||        ||||| | ||||||| ||||||||||||||||||||    
T  10572591 ttgtgttggtgtcaggcacgtggacacgcctaattcaaggagtgtccgtgcttcata 10572535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 5376609 - 5376535
Alignment:
Q  163 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||||| ||||| |||| || |||||||||| |||||| ||| |||||||||||||||||||||||| |||||||    
T  5376609 actatgaggcacgtatacaga-tccggacacgacacggacactaacacgccgacaccgctaataatttaagaaaat 5376535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 5927449 - 5927374
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||| ||||||| |||||||| ||||||||| |||||| ||||||||||  |||| ||||||||||||| ||||||    
T  5927449 ctattaagcacggatacggacaccggacacgacacggacactgacacgctaacactgctaataatttgaaaaaatc 5927374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 48547991 - 48547938
Alignment:
Q  266 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
    ||||| |||||||||||||| | | |||||||||||||||||||||||||||||    
T  48547991 ggtgtcgtgtcggtgtcggatacgcctaattcgaggagtgtccgtgcttcatag 48547938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 12443538 - 12443494
Alignment:
Q  195 gcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||    
T  12443538 gcacggatacggacacgccgacacagctaataatttgagaaaatc 12443494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 17831601 - 17831565
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||||||||||||||||||||||||    
T  17831601 actgacacgccgacaccgctaataatttgagaaaatc 17831565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 36878450 - 36878486
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||||||||||||||||||||||||    
T  36878450 actgacacgccgacaccgctaataatttgagaaaatc 36878486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 278
Target Start/End: Complemental strand, 1486796 - 1486703
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcgg 278  Q
    ||||| ||| ||||||||||||||||| ||||| ||||||||||||| |||||| | ||| |||| | |||||||  |||||||||| |||||||    
T  1486796 ccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcac-ataattcagtgtaattataagtgtcggtgtcgtgtcgg 1486703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 38503285 - 38503386
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtc 276  Q
    |||||| | ||||| | |||||| ||| |||| ||||||||||||||||||||||||||||  ||||||||| | ||||  |||||||||||||  ||||    
T  38503285 acggacacgggacatgacacggacactaacacaccgacaccgctaataatttgagaaaatc-atatatttcagtgtaattatatgtgtcggtgtcctgtc 38503383  T
Q  277 ggt 279  Q
    |||    
T  38503384 ggt 38503386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 321
Target Start/End: Original strand, 44482234 - 44482343
Alignment:
Q  218 ccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggacatg-----gctaattcgaggagtgtccgt 310  Q
    ||||| |||||||||||||||| | ||| |||| | |||||||  |||||||||| |||||||||||||||| |     |||||| ||||||||||||||    
T  44482234 ccgcttataatttgagaaaatcac-ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacagctaatccgaggagtgtccgt 44482332  T
Q  311 gcttcatagtt 321  Q
    ||| |||||||    
T  44482333 gctccatagtt 44482343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 48040558 - 48040503
Alignment:
Q  177 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 232  Q
    |||||||| ||||||||| |||||| |||||||||||||||| | |||||||||||    
T  48040558 atacggacaccggacacgacacggacactgacacgccgacacagataataatttga 48040503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 1262856 - 1262933
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgt 264  Q
    ||||||||| |||| | || ||||||||||||| |||||||||||||||||||| | ||| |||| |||||||| ||||    
T  1262856 ccggacacgacacgaacacggacacgccgacacagctaataatttgagaaaatcac-ataattcaatataattaagtgt 1262933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 9709795 - 9709845
Alignment:
Q  189 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||| ||||||| ||| |||||||||||||||||||||||||    
T  9709795 gacacgacacggacactgacatgcctacaccgctaataatttgagaaaatc 9709845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 34298411 - 34298461
Alignment:
Q  189 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||| |||||||| |||||||| |||||||||||||||||||    
T  34298411 gacacgacacggaaactgacacaccgacaccactaataatttgagaaaatc 34298461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 39130876 - 39130802
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||||||||| |||||||| ||||||||| || ||||| |||||||| |||||   ||||||||| |||||||    
T  39130876 ctatgaagcacggatacggacaccggacacgacatggatattgacacgctgacactattaataattttagaaaat 39130802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 19562691 - 19562655
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||| ||||||||||||||||||||    
T  19562691 actgacacgccgacactgctaataatttgagaaaatc 19562655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 609528 - 609493
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||||||||||||||| ||||||||||||||||||    
T  609528 actgacacgccgacaccactaataatttgagaaaat 609493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 6415078 - 6415035
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||    
T  6415078 cacggacactgacacgccgacatcgctaattatttgagaaaatc 6415035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 31014993 - 31015068
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||| | || ||| |||| |||| |||||  |||||| |||| |||| ||||||||||||||||||||    
T  31014993 ctatgaagcacggacacagacaccgggcacgacacgggcactgacgcgcctacacagctaataatttgagaaaatc 31015068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 46348460 - 46348417
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||    
T  46348460 cacggacactgacacgccgacacagctaataatttgaaaaaatc 46348417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 48450673 - 48450622
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||||| |||||| ||||||||||| |||| ||||||||||||| |||||    
T  48450673 cggacacgacacggacactgacacgccaacacagctaataatttgaaaaaat 48450622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 3490460 - 3490426
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaa 237  Q
    |||||||||||||||| ||||||||||||||||||    
T  3490460 actgacacgccgacactgctaataatttgagaaaa 3490426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 10475045 - 10475011
Alignment:
Q  205 tgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||||||||||||| |||||||||||    
T  10475045 tgacacgccgacaccgctaataacttgagaaaatc 10475011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 15641130 - 15641064
Alignment:
Q  173 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||| ||||||  |||||| | |||||| ||||||| |||||||| ||||||||||| ||||||||    
T  15641130 acgaacacggacatcggacatgacacggacactgacatgccgacactgctaataatttaagaaaatc 15641064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 40285724 - 40285686
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatcgc 241  Q
    |||||||| || |||||||||||||||||||||||||||    
T  40285724 actgacacaccaacaccgctaataatttgagaaaatcgc 40285686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 20157437 - 20157384
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||| |||||  ||||||||  |||||||||||||||| ||||||||||    
T  20157437 ccggacacgacacgggcactgacacatcgacaccgctaataatgtgagaaaatc 20157384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 21530681 - 21530714
Alignment:
Q  206 gacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||||| ||||||||||||||||||    
T  21530681 gacacgccgacaccgttaataatttgagaaaatc 21530714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 25361881 - 25361960
Alignment:
Q  209 acgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 287  Q
    ||||||||||| || |||||||||||||||| | ||| |||| | ||||  |||||||| |||| ||||||||||||||||    
T  25361881 acgccgacaccactgataatttgagaaaatcac-ataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggaca 25361960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 41877534 - 41877505
Alignment:
Q  209 acgccgacaccgctaataatttgagaaaat 238  Q
    ||||||||||||||||||||||||||||||    
T  41877534 acgccgacaccgctaataatttgagaaaat 41877505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 9828036 - 9828118
Alignment:
Q  206 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataa--ttatgtgtcggtgtggtgtcggtgtcggaca 287  Q
    |||||||||||||| |||||||||||| |||||| | ||| |||| | |||  |||||||||||||| ||||| ||||| ||||    
T  9828036 gacacgccgacaccactaataatttgataaaatcac-ataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagaca 9828118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 10577829 - 10577769
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||| |||||| || ||||||||||||| ||||||  ||| ||||||||    
T  10577829 acggacaccggacacgacacggacaccgacacgccgacacagctaatttttttagaaaatc 10577769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 18556533 - 18556497
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttga 232  Q
    |||||| |||||||||||||||| |||||||||||||    
T  18556533 cacggacactgacacgccgacacagctaataatttga 18556497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 25452215 - 25452152
Alignment:
Q  206 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 270  Q
    |||| ||| |||| |||||||||||||||||||| | ||| |||| | |||||||||||||||||    
T  25452215 gacatgccaacactgctaataatttgagaaaatctc-ataattcagtgtaattatgtgtcggtgt 25452152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 34315663 - 34315722
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaa 224  Q
    |||||||||||| ||||||| |  ||||||| |||||||||||||| |||||||| |||||    
T  34315663 ctatgaagcacggatacgga-tatggacacgacacggatactgacatgccgacacagctaa 34315722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 8383207 - 8383282
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||| |||||| | |||||| | ||||||| |||||| | |||||||||||||||||||||||||||||||||||    
T  8383207 ctatgtagcacggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatc 8383282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 5441128 - 5441029
Alignment:
Q  177 atacggac-tccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgt 275  Q
    |||||||| |||||||||| ||| || |||||||||||| ||||||||| |||||||||||||| | ||| |||| |  |||||||||||||||| ||||    
T  5441128 atacggacatccggacacgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcac-ataattcaatggaattatgtgtcggtgttgtgt 5441030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 8039908 - 8039818
Alignment:
Q  200 gatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggacatg 289  Q
    |||| ||||||||| ||||||||||||||||||||||||   |||| |||| | ||||  ||||||||||||| ||||||||||||||||||    
T  8039908 gatattgacacgccaacaccgctaataatttgagaaaat-tatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatg 8039818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 24205135 - 24205076
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||| ||||||||| |||||| |||||||||||||||| | |||||||||||||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaat 24205076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 8842280 - 8842346
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataattt 230  Q
    |||||||||||| |||||||| ||||| ||| |||||| | ||||| ||||||||||||||||||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataattt 8842346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 5407325 - 5407261
Alignment:
Q  195 gcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat 260  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| | ||| |||||| |||||||    
T  5407325 gcacggataccgacacgccgacaccgctaaaaatttgagaaaatcac-ataattcattgtaattat 5407261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 28917966 - 28918026
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||| |||||| |||||||||||||||  ||||||||||||| ||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatc 28918026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 4991061 - 4991002
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||| ||| ||||| |||||| |||||||| ||||||||||||||| |||||||||||    
T  4991061 acggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaat 4991002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 10335386 - 10335327
Alignment:
Q  173 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 232  Q
    ||||| |||||| ||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  10335386 acgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttga 10335327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 287
Target Start/End: Original strand, 25064859 - 25064981
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtg 263  Q
    ||||||| ||||  ||| ||| ||||||||| ||| || | ||||||||||||||||||||| |||||| |||||| | ||| || | | ||||||||||    
T  25064859 ctatgaaacacgggtacagacaccggacacgacacagacattgacacgccgacaccgctaatgatttgaaaaaatcac-ataatttagtgtaattatgtg 25064957  T
Q  264 tcggtgtggtgtcggtgtcggaca 287  Q
    | ||| | |||| |||||||||||    
T  25064958 ttggtatcgtgttggtgtcggaca 25064981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 55401025 - 55401100
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||  |||||||| ||||| ||| |||||| ||||| ||||||||||  |||||||||||| ||||||    
T  55401025 ctatgaagcacagatacggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatc 55401100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 8587129 - 8587055
Alignment:
Q  165 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||  |||||||| ||||||| | |||||| ||||||||||||||||  ||| |||||||| ||||||    
T  8587129 tatgaagcacagatacggacaccggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatc 8587055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 9800014 - 9800064
Alignment:
Q  188 ggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||||| |||| | ||||||||||||||||| ||||||||||||||||||    
T  9800014 ggacacgacacgtacactgacacgccgacacctctaataatttgagaaaat 9800064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 32429488 - 32429414
Alignment:
Q  165 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||| |||||||| ||||||||  |||| | | |||||| |||||| |||||||||||| ||||||||    
T  32429488 tatgaagcacgtatacggacaccggacacaacacgaacattgacactccgacaacgctaataatttaagaaaatc 32429414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 2620139 - 2620087
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||| | |||| ||||||||||||||||| ||||| |||||||||||||    
T  2620139 cggacacgactcggacactgacacgccgacaccactaatcatttgagaaaatc 2620087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 15796388 - 15796328
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||| |||||| | |||||||||||||| | ||||||||||| ||||||    
T  15796388 acggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatc 15796328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 26492291 - 26492239
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||| |||||| |||||||||||||||  ||||||||||||| ||||||    
T  26492291 cggacacgacacggacactgacacgccgacagagctaataatttgaaaaaatc 26492239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 21720746 - 21720785
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaa 235  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  21720746 cacggacactgacacgccgacaccgataataatttgagaa 21720785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 4466576 - 4466538
Alignment:
Q  283 ggacatggctaattcgaggagtgtccgtgcttcatagtt 321  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  4466576 ggacacggcttattcgaggagtgtccgtgcttcatagtt 4466538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Complemental strand, 5440995 - 5440965
Alignment:
Q  291 ctaattcgaggagtgtccgtgcttcatagtt 321  Q
    |||||||||||||||||||||||||||||||    
T  5440995 ctaattcgaggagtgtccgtgcttcatagtt 5440965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 12674585 - 12674535
Alignment:
Q  189 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||| | |||||| ||||||| ||||||||||||||||||||    
T  12674585 gacacgacacggacattgacacaccgacactgctaataatttgagaaaatc 12674535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Original strand, 13807237 - 13807275
Alignment:
Q  283 ggacatggctaattcgaggagtgtccgtgcttcatagtt 321  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  13807237 ggacatgcctaattcgaggagtgtccgtgtttcatagtt 13807275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 14223962 - 14223889
Alignment:
Q  163 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    ||||||||||||||| || ||| | ||||||| ||| || || ||||||||||||| | ||||||||||||||||    
T  14223962 actatgaagcacgaacacagacac-ggacacgacacagacaccgacacgccgacacagataataatttgagaaaa 14223889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 3865633 - 3865592
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    |||||| |||||||||||||||| ||||||||||||| ||||    
T  3865633 cacggacactgacacgccgacacagctaataatttgaaaaaa 3865592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 12703989 - 12704030
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    ||||||||  |||||||||||||| |||||||||||||||||    
T  12703989 cacggatatggacacgccgacaccactaataatttgagaaaa 12704030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 34307846 - 34307794
Alignment:
Q  207 acacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat 260  Q
    |||||| |||||||||||||||||||||||||| | |||||||| | |||||||    
T  34307846 acacgctgacaccgctaataatttgagaaaatcac-atatttcagtgtaattat 34307794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 3164119 - 3164059
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||| |||||| | || |||| |||||| ||||||||||||| ||||||    
T  3164119 acggacaccggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatc 3164059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 4987361 - 4987325
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  4987361 actgacacgccgacacagctaataatttgaaaaaatc 4987325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 6525750 - 6525714
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||| | |||||||||||||||||||||||||||    
T  6525750 actgacatgtcgacaccgctaataatttgagaaaatc 6525714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 10318111 - 10318075
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttga 232  Q
    |||||| |||||||||||||||| |||||||||||||    
T  10318111 cacggacactgacacgccgacacagctaataatttga 10318075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 14618732 - 14618804
Alignment:
Q  165 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    |||||||||||  ||||||| || |||||| |||||  ||||| |||| |||||| |||||||||| ||||||    
T  14618732 tatgaagcacgggtacggacaccagacacgacacgggcactgagacgctgacacccctaataatttaagaaaa 14618804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 14832080 - 14832124
Alignment:
Q  195 gcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||| |||||||||| || ||||||||||||| ||||||    
T  14832080 gcacggatacggacacgccgatacagctaataatttgaaaaaatc 14832124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 21479107 - 21479143
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  21479107 actgacacgccgacacagctaataatttgaaaaaatc 21479143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 25074781 - 25074813
Alignment:
Q  206 gacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||||||||||||| |||||||||||||||||    
T  25074781 gacacgccgacaccgataataatttgagaaaat 25074813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 26290360 - 26290396
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||||  ||||||||||||||||||    
T  26290360 actgacacgccgacaccattaataatttgagaaaatc 26290396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 26508083 - 26508135
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||  || ||||||||||||| ||||| ||||||||||||| ||||||    
T  26508083 cggacacgatacagatactgacacgctgacacagctaataatttgaaaaaatc 26508135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 27505334 - 27505370
Alignment:
Q  283 ggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  27505334 ggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 40052321 - 40052357
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  40052321 actgacacgccgacacagctaataatttgaaaaaatc 40052357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 173 - 319
Target Start/End: Original strand, 21002 - 21149
Alignment:
Q  173 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 270  Q
    ||||| |||||| || |||||| |||||| ||||||| || ||||| | |||||||||||||||||| | |||  ||  ||||||  ||||||||||| |    
T  21002 acgaacacggacaccagacacgacacggacactgacatgctgacacggttaataatttgagaaaatcac-ataagtcggtataattatatgtgtcggtat 21100  T
Q  271 ggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
     ||||||||||| |||| | ||||| |||| ||| ||||||||||||||    
T  21101 cgtgtcggtgtcagacacgcctaatccgagaagtatccgtgcttcatag 21149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 21217 - 21278
Alignment:
Q  258 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||||||| ||||||||||||||    
T  21217 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgaggagtatccgtgcttcatag 21278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 21346 - 21407
Alignment:
Q  258 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| |||||| |||||||||||    
T  21346 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtgtctgtgcttcatag 21407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 8763 - 8823
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||    
T  8763 acggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 8823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 225362 - 225303
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||| ||||||||| |||||| |||||||||||||||| | |||||||||||||||||    
T  225362 acggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaat 225303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 241559 - 241668
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtc 276  Q
    |||||| ||||||||| |||||| |||||||||||||||| ||||||||||||  |||||| | ||| || | | |||||||  |||||||||| ||||     
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcac-ataatttagtgtaattatgagtgtcggtgtcgtgtt 241657  T
Q  277 ggtgtcggaca 287  Q
    |||||||||||    
T  241658 ggtgtcggaca 241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 92790 - 92831
Alignment:
Q  197 acggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  92790 acggacactgacacgccgacaccgctaataatttgagaaaat 92831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 289
Target Start/End: Original strand, 53170 - 53256
Alignment:
Q  204 ctgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggacatg 289  Q
    |||||||||||| ||||| ||||||||||||||||| | ||| |||| | |||||||  |||||||||  ||||||||||||||||||    
T  53170 ctgacacgccgataccgccaataatttgagaaaatcac-ataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatg 53256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 178925 - 178853
Alignment:
Q  167 tgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||| |||  ||| ||||||||| |||||| ||||||||||||||||  |||||||||||| ||||||    
T  178925 tgaagcacggatattgacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatc 178853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 192325 - 192284
Alignment:
Q  197 acggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  192325 acggacactgacacgccgacaccgttaataatttgagaaaat 192284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 23293080 - 23293020
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||| |||||| | |||||||||||||| ||||||||||||| ||||||    
T  23293080 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatc 23293020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 35723455 - 35723420
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaat 238  Q
    ||||||||||||||||||||||||||||||||||||    
T  35723455 actgacacgccgacaccgctaataatttgagaaaat 35723420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 17345485 - 17345451
Alignment:
Q  203 actgacacgccgacaccgctaataatttgagaaaa 237  Q
    |||||||||||||||||||||||||||||||||||    
T  17345485 actgacacgccgacaccgctaataatttgagaaaa 17345451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 847918 - 847975
Alignment:
Q  181 ggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||| ||||||||| ||| || |||||||||||||  |||||||||||||||||||||    
T  847918 ggaccccggacacgacacagacactgacacgccgatgccgctaataatttgagaaaat 847975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 36635296 - 36635349
Alignment:
Q  186 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||| | |||| ||||||||||| ||||| |||||||||||||||||||    
T  36635296 ccggacacgactcggacactgacacgccaacaccactaataatttgagaaaatc 36635349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 24343472 - 24343531
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||| ||||||||| ||||||  | ||||||||||||| | |||||||||||||||||    
T  24343472 acggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaat 24343531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 30982967 - 30982863
Alignment:
Q  181 ggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcgg 278  Q
    |||| ||||| ||| |||||| || ||||||||   ||||||||| ||||||||||||| | |||||||| | |||||||  |||||||||| |||||||    
T  30982967 ggacaccggatacgacacggacacagacacgcc---accgctaatgatttgagaaaatcac-atatttcagtgtaattataagtgtcggtgtcgtgtcgg 30982872  T
Q  279 tgtcggaca 287  Q
    |||| ||||    
T  30982871 tgtcagaca 30982863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 7012048 - 7012090
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||| || ||||||||||||||| |||||||||||||||||    
T  7012048 cacggacaccgacacgccgacaccgataataatttgagaaaat 7012090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 7670625 - 7670709
Alignment:
Q  158 catatactatgaagcacgaatacggactccggacacggcacggatactgaca---cgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||||||||| |||  ||||||||| | |||| |||||||   ||||||||  ||||||| ||||||||||||    
T  7670625 catatagtatgaagcacgaatatggataccggacacgacgcggaaactgacacgtcgccgacattgctaatagtttgagaaaatc 7670709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 20521933 - 20521883
Alignment:
Q  189 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||| ||||||||||||| |||| ||||||||||| ||||||    
T  20521933 gacacgacacggacactgacacgccgataccgataataatttgataaaatc 20521883  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 20633450 - 20633508
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    |||||| || ||||||  ||||| ||||||||| |||||||||||||||||||| ||||    
T  20633450 acggacaccagacacgatacggacactgacacgtcgacaccgctaataatttgaaaaaa 20633508  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 30298928 - 30299048
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcggtgtcggacatggcta 293  Q
    |||||| |||||||||||||||| ||||||||||||| ||||  |  ||| |||| | |||||  | |||||||||| ||| ||     ||||| | |||    
T  30298928 cacggacactgacacgccgacacagctaataatttgaaaaaaatgacataattcagtgtaattacaagtgtcggtgtcgtgccg-----ggacacgtcta 30299022  T
Q  294 attcgaggagtgtccgtgcttcatag 319  Q
    || |||||||||||||||||||||||    
T  30299023 atccgaggagtgtccgtgcttcatag 30299048  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 30327796 - 30327916
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcggtgtcggacatggcta 293  Q
    |||||| |||||||||||||||| ||||||||||||| ||||  |  ||| |||| | |||||  | |||||||||| ||| ||     ||||| | |||    
T  30327796 cacggacactgacacgccgacacagctaataatttgaaaaaaatgacataattcagtgtaattacaagtgtcggtgtcgtgccg-----ggacacgtcta 30327890  T
Q  294 attcgaggagtgtccgtgcttcatag 319  Q
    || |||||||||||||||||||||||    
T  30327891 atccgaggagtgtccgtgcttcatag 30327916  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 40613441 - 40613475
Alignment:
Q  205 tgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||||||||| ||||||||||||    
T  40613441 tgacacgccgacaccgctaatattttgagaaaatc 40613475  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 28084475 - 28084544
Alignment:
Q  168 gaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 237  Q
    |||||||  |||||||| ||||||||| ||| ||  ||||||||||||||| ||||| ||||||| ||||    
T  28084475 gaagcacagatacggacaccggacacgacacagacgctgacacgccgacacagctaagaatttgaaaaaa 28084544  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 1747205 - 1747237
Alignment:
Q  207 acacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||||||||||| |||||||||||    
T  1747205 acacgccgacaccgctaataaattgagaaaatc 1747237  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 5775469 - 5775392
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacgga---tactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||||||||||| |||| | ||||||| ||||||   |||||||||  |||||||  ||||||||||||||||||    
T  5775469 ctatgaagcacgaatatggacacaggacacgacacggacactactgacac-acgacaccattaataatttgagaaaatc 5775392  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 16184801 - 16184842
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||||||||||||||  |||||||||||||||||||||    
T  16184801 cacggacactgacacgccgac--cgctaataatttgagaaaatc 16184842  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 18844467 - 18844423
Alignment:
Q  275 tcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
    ||||||||||||| | ||||| |||| ||||||||||||||||||    
T  18844467 tcggtgtcggacacgcctaatccgagaagtgtccgtgcttcatag 18844423  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 28470448 - 28470484
Alignment:
Q  283 ggacatggctaattcgaggagtgtccgtgcttcatag 319  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  28470448 ggacatgcctaatccgaggagtgtccgtgcttcatag 28470484  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 28720827 - 28720894
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 232  Q
    |||||||||||| |||| ||| | ||||||| |||| | ||||||| |||||||| |||||||||||||    
T  28720827 ctatgaagcacgtatacagacac-ggacacgacacgaacactgacatgccgacacagctaataatttga 28720894  T

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Target: scaffold0652 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 556 - 496
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| ||| ||||| |||||| ||||| |||||||||| ||||||||||||| ||||||    
T  556 acggacaccgaacacgccacggacactgatacgccgacactgctaataatttgaaaaaatc 496  T

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Target: scaffold0279 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 17979 - 17903
Alignment:
Q  164 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcg 240  Q
    |||||||||||| |||||||| | |||||||  ||  | ||  ||||||| ||||||||||||||||||||||||||    
T  17979 ctatgaagcacggatacggacactggacacgatacaaacaccaacacgcctacaccgctaataatttgagaaaatcg 17903  T

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Target: scaffold0475 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 3281 - 3340
Alignment:
Q  179 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 238  Q
    |||||| ||||||||| |||||||||||||||| |||||  ||||| ||||| |||||||    
T  3281 acggacaccggacacgacacggatactgacacgtcgacaatgctaacaattttagaaaat 3340  T

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Target: scaffold0103 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 51793 - 51836
Alignment:
Q  196 cacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||    
T  51793 cacggacactgacacgccgacacagctaataatttgaaaaaatc 51836  T

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Target: scaffold0697 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 1636 - 1669
Alignment:
Q  206 gacacgccgacaccgctaataatttgagaaaatc 239  Q
    ||||||||||||||| ||||||||||||||||||    
T  1636 gacacgccgacaccgttaataatttgagaaaatc 1669  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 28830 - 28913
Alignment:
Q  194 ggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtc 276  Q
    |||||| | ||| |||||||||||||| ||||||||| |||||||||| ||| |||| | ||||  ||||||||||||| |||||    
T  28830 ggcacgaacactaacacgccgacaccgttaataatttaagaaaatcgc-ataattcaatgtaattatatgtgtcggtgttgtgtc 28913  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Complemental strand, 8592 - 8564
Alignment:
Q  291 ctaattcgaggagtgtccgtgcttcatag 319  Q
    |||||||||||||||||||||||||||||    
T  8592 ctaattcgaggagtgtccgtgcttcatag 8564  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 46655 - 46707
Alignment:
Q  187 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 239  Q
    |||||||| |||||| | |||||||||||||| | ||||||||||| ||||||    
T  46655 cggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatc 46707  T

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Target: scaffold0027; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 46731 - 46778
Alignment:
Q  273 tgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 321  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||||||    
T  46731 tgtcggtgtcg-acacgcctaatccgaggagtgtccgtgcttcatagtt 46778  T

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