View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5025_high_2 (Length: 367)
Name: NF5025_high_2
Description: NF5025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5025_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 20457999 - 20457641
Alignment:
| Q |
1 |
taaaacgaagttgcacacaaaattcgatccattagttttgtgaacaccgaatattactttatcaataacaaagaaataaatcatatacacaacttataac |
100 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20457999 |
taaaacgaagttgcactcaaaattcgatccactagttttgtgaacaccaaatattactttatcaataacaaagaaataaatcatatacacaacttataac |
20457900 |
T |
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| Q |
101 |
caattccacggattctgctatagcagagtaatctacatgaatattaaaatagatggtataaaaatttaacaaaacaatcatcagaaatgtacatttggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20457899 |
caattccacggattctgctatagcagagtaatctacatgaatattaagatagatggtataaaaatttaacaaaacaatcatcagaaatgtacatttggaa |
20457800 |
T |
|
| Q |
201 |
ttccagcacttttttgacagaggtaataacaacattatcaaatgatatagtaattatgaaacaaactccaattgctaaaacaatatacctggccttctcc |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20457799 |
ttccagcacttttttgacagaggtaaaaacaacattatcaagtgatatagtaattatgaaacaaattccaattgctaaaacaatatacctggccttctcc |
20457700 |
T |
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| Q |
301 |
gctagaactggatggtgattgagtagaagtcgaatctgagtttctactcgtctgtggtg |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20457699 |
actagaactggatggtgattgagtagaagtcgaatctgagtttctactcgtctgtggtg |
20457641 |
T |
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