View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5025_high_4 (Length: 351)
Name: NF5025_high_4
Description: NF5025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5025_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 39729132 - 39729465
Alignment:
| Q |
16 |
agagcaataatgaatacgtaatcaacccttacatactcatatgtacgtacgtgagtaaatcgaaaaactagttgtgtgaaatcgagaactaataatagat |
115 |
Q |
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| T |
39729132 |
agagcaataatgaatacgtaatcaacccttacatactcatatgtaggtacgtgagtaaatcgaaaaactagttgtgtgaaatcgagaactaataatggat |
39729231 |
T |
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| Q |
116 |
ggaataatttannnnnnnnnctttctaaaaatg------aaatttaaattgatttcaaattggagttttgttaatcaaacatgatgttttga--ttttan |
207 |
Q |
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| T |
39729232 |
ggaataatat-tttttttttctttctaaaaatgaaatttaaatttaaattgatttcaaattggagttttgttaatcaaacatgatgttttgatttttttt |
39729330 |
T |
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| Q |
208 |
nnnnnnnggtacaagatattttgatttctttaacttgacaaaattagagatcattatttcaacaaacttgcttgtaatactcagattcgatttattcctc |
307 |
Q |
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| T |
39729331 |
tttttttggtacaagatattttgatttctttaacttgacaaaattagagatcattatttcaacaaacttgcttgtaatactcagattcgatttattactc |
39729430 |
T |
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| Q |
308 |
taatttatatattgttcatttgagaaatcccagatccaacaaag |
351 |
Q |
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| T |
39729431 |
taa---------tgttcatttcagaaatcccagatccaacaaag |
39729465 |
T |
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