View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5025_high_8 (Length: 328)
Name: NF5025_high_8
Description: NF5025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5025_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 6454779 - 6455092
Alignment:
| Q |
1 |
gttcaacttcttggtggtcatgaaagtaagcaatattatcctagataagcacttttatacgataagtgtttattctgtaagtgtttacttaagttcttta |
100 |
Q |
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| T |
6454779 |
gttcaactacttggtggtcatgaaagtaagcaatattatcctagataagcacttttatacgataagtgtttattctataagcgtttacttaagttcttta |
6454878 |
T |
|
| Q |
101 |
ttcaaatagaatcaatatatacatgattattttgatatgaaatattatcatttcttcttcattatggtaagaacatgaacatgtccataacaaaatataa |
200 |
Q |
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| T |
6454879 |
ttcaaatagaatcaatatatacatgattattttgatatgaaatattatcatttcttcttcattatggaaagaacatgaacatgtccataacaaaatataa |
6454978 |
T |
|
| Q |
201 |
ggaaaaaacaagattaatgtannnnnnngcttatcttttattacaaggaagtataatataagtatatgattatggatcatgttaattaattgtgtaatta |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
6454979 |
cgaaaaaacaagattaatgtatttttttgcttatcttttattacaaggaagtataatataag--------tatggatcatgttagttaattgtgtaatta |
6455070 |
T |
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| Q |
301 |
aacttgcaggagcaacaccaaa |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
6455071 |
aacttgcaggagcaacaccaaa |
6455092 |
T |
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