View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5025_low_1 (Length: 205)
Name: NF5025_low_1
Description: NF5025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5025_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 36188441 - 36188248
Alignment:
| Q |
14 |
ttctaaatatttcgtacataatatgctagtggtcaaaaccctctcgagttagcaaaatttcttgtcgtatatgtcgatagtttagacttagtcatcaatt |
113 |
Q |
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| T |
36188441 |
ttctaaatatttcgtacataatctgctagtggtcaaaaccctttcaagttagcaaaatttcttgtcgtatatgtcgatagtttagacttggtcatcaatt |
36188342 |
T |
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| Q |
114 |
ttttgagcttgttcatcaattttctgccactattcttccaattttttcttttcaaccaccttctttcctgtctttgt--tataattaataaaca |
205 |
Q |
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| T |
36188341 |
ttttgagcttgttcatcaattttctgctactattcttccaattttttcttttcaaccaccttctttcctgtctttgttatataattaataaaca |
36188248 |
T |
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