View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5026-Insertion-12 (Length: 90)

Name: NF5026-Insertion-12
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5026-Insertion-12
NF5026-Insertion-12
[»] chr2 (3 HSPs)
chr2 (7-90)||(4493692-4493775)
chr2 (7-88)||(4499240-4499321)
chr2 (7-89)||(4506549-4506631)


Alignment Details
Target: chr2 (Bit Score: 84; Significance: 2e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 4493692 - 4493775
Alignment:
Q  7 atatggttgagtgaatgatacattcctggatcgttcggcaagtattgttacatctgctccaatagcatcataggtctgcaatag 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4493692 atatggttgagtgaatgatacattcctggatcgttcggcaagtattgttacatctgctccaatagcatcataggtctgcaatag 4493775  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 4499240 - 4499321
Alignment:
Q  7 atatggttgagtgaatgatacattcctggatcgttcggcaagtattgttacatctgctccaatagcatcataggtctgcaat 88  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  4499240 atatggttgagtgaatgatacattccttgatcgtttggcaagtattgttacatcagctacaaaagcatcataggtctgcaat 4499321  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 4506549 - 4506631
Alignment:
Q  7 atatggttgagtgaatgatacattcctggatcgttcggcaagtattgttacatctgctccaatagcatcataggtctgcaata 89  Q
    ||||||||||||||||||||||||| | ||||| | ||||||||||||||||||| || ||||||||||||||| ||||||||    
T  4506549 atatggttgagtgaatgatacattctttgatcggttggcaagtattgttacatctcctacaatagcatcataggactgcaata 4506631  T

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