View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026-Insertion-15 (Length: 315)
Name: NF5026-Insertion-15
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026-Insertion-15 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 9798286 - 9798117
Alignment:
| Q |
7 |
agaatgtagctaagttaacaatgatatgttagtagatttgctttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctg |
106 |
Q |
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| T |
9798286 |
agaatgtagctaagttaacaatgatatgttagtagatttgctttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctg |
9798187 |
T |
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| Q |
107 |
cataactacttgcgggtagttgggtttggaaatttggtgctaaagggggttgttgtcatttcttcgaagg |
176 |
Q |
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| T |
9798186 |
cataattacttgcgggtagttgggtttggaaatttggtgctaaagggggttgttgtcattttttcgaagg |
9798117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 176 - 315
Target Start/End: Original strand, 45177109 - 45177248
Alignment:
| Q |
176 |
gttgagagttcattattttgtcatgtgtaacacgatacatagtctttaacgtattataatcctttgtttaatttgagcaggttggaattgctaataacac |
275 |
Q |
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| T |
45177109 |
gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatttgagcaggttggaattgctaataacac |
45177208 |
T |
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| Q |
276 |
tggctatgatgagattcatgatgttcatagcttagtagca |
315 |
Q |
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| T |
45177209 |
ttgctatgatgagattcatgatgttcatagcttagtagca |
45177248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 45175559 - 45175686
Alignment:
| Q |
49 |
ttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctgcataactacttgcgggtagttgggtttggaaatttggtgcta |
148 |
Q |
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| T |
45175559 |
ttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctgcataattacttgcgggtagttgggtttggaaatttggtgcta |
45175658 |
T |
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| Q |
149 |
aagggggttgttgtcatttcttcgaagg |
176 |
Q |
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| T |
45175659 |
aagggggttgttgtcatttattcgaagg |
45175686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 181 - 315
Target Start/End: Complemental strand, 44666689 - 44666554
Alignment:
| Q |
181 |
gagttcattattttgtcatgtgtaacacgatacatagtctttaacgtattataatcctttgtttaa-tttgagcaggttggaattgctaataacactggc |
279 |
Q |
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| T |
44666689 |
gagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccgttttagtttgagcaggctgcaattgctaataacacctgc |
44666590 |
T |
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| Q |
280 |
tatgatgagattcatgatgttcatagcttagtagca |
315 |
Q |
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| T |
44666589 |
tatgatgagattcttgatgttcatagcttagtagca |
44666554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 181 - 315
Target Start/End: Complemental strand, 44686013 - 44685878
Alignment:
| Q |
181 |
gagttcattattttgtcatgtgtaacacgatacatagtctttaacgtattataatcctttgtttaa-tttgagcaggttggaattgctaataacactggc |
279 |
Q |
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| T |
44686013 |
gagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccgttttagtttgagcaggctgcaattgctaataacacctgc |
44685914 |
T |
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| Q |
280 |
tatgatgagattcatgatgttcatagcttagtagca |
315 |
Q |
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| T |
44685913 |
tatgatgagattcttgatgttcatagcttagtagca |
44685878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 45093735 - 45093595
Alignment:
| Q |
176 |
gttgagagttcattattttgtcatgtgtaacacgatacatagtctttaacgtattataatcctttgtttaatt-tgagcaggttggaattgctaataaca |
274 |
Q |
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|||| ||||||||||||||||||| |||| || || || || ||||||||||| | | | ||||||| | | |||||||||||||||||||||| ||| |
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| T |
45093735 |
gttgggagttcattattttgtcatttgtagcaaaatgtattgtttttaacgtattgttaccatttgttttagtatgagcaggttggaattgctaattaca |
45093636 |
T |
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| Q |
275 |
ctggctatgatgagattcatgatgttcatagcttagtagca |
315 |
Q |
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| T |
45093635 |
ctggctatcatgtgattcatgatgttcatagcttagtagca |
45093595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 35816689 - 35816755
Alignment:
| Q |
249 |
tgagcaggttggaattgctaataacactggctatgatgagattcatgatgttcatagcttagtagca |
315 |
Q |
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| T |
35816689 |
tgagcaggttggaattgctaattacactggctatggtgagattcatgatgttcatagcttagtagca |
35816755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 45102876 - 45102806
Alignment:
| Q |
242 |
tttaatttgagcaggttggaattgctaataacactggctatgatgagattcatgatgttcatagcttagta |
312 |
Q |
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| T |
45102876 |
tttagtttgagcaggttggagttgctaataacactggctatgatgagtttcatgatgttcatagcttagta |
45102806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 315
Target Start/End: Complemental strand, 45568412 - 45568278
Alignment:
| Q |
181 |
gagttcattattttgtcatgtgtaacacgatacatagtctttaacgtattataatcctttgtttaatt-tgagcaggttggaattgctaataacactggc |
279 |
Q |
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| T |
45568412 |
gagttcattatgttgtcatttgtagcacaa-atacagtttttaacatattgttatcatttgttttagtatgagcaggtaggaattgctaattacactggt |
45568314 |
T |
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| Q |
280 |
tatgatgagattcatgatgttcatagcttagtagca |
315 |
Q |
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| T |
45568313 |
tacaatgagattcatgatgttcatagcttagtagca |
45568278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 45094857 - 45094818
Alignment:
| Q |
36 |
tagtagatttgctttgatcctgtaattgaagaacaactta |
75 |
Q |
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| T |
45094857 |
tagtagatttgctttgatcctgcaactgaagaacaactta |
45094818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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