View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026-Insertion-16 (Length: 307)
Name: NF5026-Insertion-16
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026-Insertion-16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 1139178 - 1139477
Alignment:
| Q |
8 |
cctttagcctcaatccaccacctgatttttcacattattctccaatactattatccaacatctcaaaaacatcatatgaccaaagtaaccaaaccaatat |
107 |
Q |
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| T |
1139178 |
cctttagcctcaatccaccacctgatttttcacattctcctccaatactactatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatat |
1139277 |
T |
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| Q |
108 |
ttctatcaaacaaaattgttcggctattactcataatcttacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgag |
207 |
Q |
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| T |
1139278 |
ttctatcaaacaaaattgttcggctattactcataaccttacttcaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgag |
1139377 |
T |
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| Q |
208 |
gatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtccta |
307 |
Q |
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| T |
1139378 |
gatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtccta |
1139477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 1135970 - 1136265
Alignment:
| Q |
8 |
cctttagcctcaatccaccacctgatttttcacattattctccaatactattatccaacatctcaaaaacatcatatgaccaaagtaaccaaaccaatat |
107 |
Q |
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| T |
1135970 |
ccttaagcctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatat |
1136069 |
T |
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| Q |
108 |
ttctatcaaacaaaattgttcggctattactcataatcttacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgag |
207 |
Q |
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| T |
1136070 |
ttctatcaaacaaaattgtccggcta---ctcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgag |
1136166 |
T |
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| Q |
208 |
gatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcct |
306 |
Q |
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| T |
1136167 |
gatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcct |
1136265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 93 - 306
Target Start/End: Complemental strand, 54479474 - 54479261
Alignment:
| Q |
93 |
taaccaaaccaatatttctatcaaacaaaattgttcggctattactcataatcttacttaaaatggattggaagaattattaaagattcctaaggctatg |
192 |
Q |
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||||||||| ||||||||||||||| || |||| | || | ||||| |||| ||||||| | |||| ||| |||| || || |||||||||| ||||||| |
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| T |
54479474 |
taaccaaacaaatatttctatcaaaaaatattgcttggttgttactaataaccttacttcacatgggttgaaagacttgttgaagattcctatggctatg |
54479375 |
T |
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| Q |
193 |
catgacatgaatgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttct |
292 |
Q |
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| T |
54479374 |
catgacatgaatgaggatgaattgttttggagagcttcattggaacctatgattcataaaactccattcaaacaaacaccaaaggttgcgtttatgttct |
54479275 |
T |
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| Q |
293 |
tgacaaaaggtcct |
306 |
Q |
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| T |
54479274 |
tgacaataggtcct |
54479261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 146 - 302
Target Start/End: Complemental strand, 31269290 - 31269134
Alignment:
| Q |
146 |
ttacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgat |
245 |
Q |
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|||||| |||||| ||||| ||||| || |||||||| | |||||||||||| |||||||| || |||||||||||||||||||| || ||||||||| |
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| T |
31269290 |
ttacttcaaatgggttggaggaatttttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgat |
31269191 |
T |
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| Q |
246 |
tcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaagg |
302 |
Q |
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| T |
31269190 |
tcataaacctccattcaaacaaataccaaaggttgcatttatgtttttgaccaaagg |
31269134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 305
Target Start/End: Complemental strand, 48324581 - 48324469
Alignment:
| Q |
193 |
catgacatgaatgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttct |
292 |
Q |
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| T |
48324581 |
catgatatgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttt |
48324482 |
T |
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| Q |
293 |
tgacaaaaggtcc |
305 |
Q |
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| T |
48324481 |
tgacaaaaggtcc |
48324469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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