View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5026-Insertion-4 (Length: 795)
Name: NF5026-Insertion-4
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026-Insertion-4 |
 | |
|
| [»] chr1 (9 HSPs) |
| |
|
| [»] scaffold0710 (2 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 746; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 7 - 795
Target Start/End: Original strand, 51771658 - 51772442
Alignment:
| Q |
7 |
atatcaagattcacatcctacttttaatccctttaaatactacatacttagaatacaaatggactgatcaaaccaagcaagctaagcttcctctaatagc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51771658 |
atatcaagattcacatcctacttttaatccctttaaatactacatacttagaatacaaatggactgatcaaaccaagcaagctaagcttcctctaatagc |
51771757 |
T |
|
| Q |
107 |
tcaaactcaaaccattctctcttcacctagtgctagtgctagtcttttcaacaaaacacaaaccttagtaatcatcattcaacacaacatgcagatctca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
51771758 |
tcaaactcaaaccattctctcttcacctagtgctagtgctagtcttttcaacaaaacacaaaccttagtaatcatcattcaac-----atgcagatctca |
51771852 |
T |
|
| Q |
207 |
cttcttcatgagctagtttctggaactccaatcatatttgatcagttccaaaattccgttaacagatacttacttgattctacctctcatcaatgtcaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51771853 |
cttcttcatgagctagtttctggaactccaatcatatttgatcagttccaaaattccgttaacagatacttacttgattctacctctcatcaatgtcaat |
51771952 |
T |
|
| Q |
307 |
atccatccaaacatcaaagcaaaagtaagactttcatttcctttacagacgaatcatgaaaatcgatctgtatttatggttttaccaatatagagtgctt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51771953 |
atccatccaaacatcaaagcaaaagtaagactttcatttcctttacagacgaatcatgaaaatcgatctgtattgatggttttaccaatatagagtgctt |
51772052 |
T |
|
| Q |
407 |
tttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctagaaaggctgatagtctctcacaaaaagtccaagaacatggtgagtacccttgta |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51772053 |
tttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctagaaaggctgatagtctctcacaaaaagtccaagaacatggtgagtacccttgta |
51772152 |
T |
|
| Q |
507 |
agactgagatgtgtttccaattgttattgcatatatagtttatgaagtccatgccttttgtctgcaatatctatatcagtttatgaactcctcatacagt |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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|
| T |
51772153 |
agactgagatgtgtttccaattgttattgcatatatagtttatgaagtccatgccttttgtctgcaatatctatatcagtttatgaactcctcgtatagt |
51772252 |
T |
|
| Q |
607 |
catttactcgatcgtttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaagag-aaattgagctta |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
51772253 |
catttactcgatcgtttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagctta |
51772352 |
T |
|
| Q |
706 |
ggggctcaaattcttcaagtgggtggagtggagaaagtgtttatgcggtattttagtgtgagtgaggacgagagtctgttgaaaatttcg |
795 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51772353 |
ggggctcaaattcttcaagtgggtggagtggagaaagtgtttatgcggtattttagtgtgagtgaggacgagagcctgttgaaaatttcg |
51772442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 524
Target Start/End: Original strand, 51807254 - 51807751
Alignment:
| Q |
12 |
aagattcacatcctacttttaatccctttaaatactacatacttagaatacaaatggactgatcaaaccaagcaagctaagcttcctctaatagctcaaa |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51807254 |
aagattcacttcctacttttaatccctttaaatactacatccttagaatacatagggactgatcaaaccaagcaagctaagcttcctctaatagctcaaa |
51807353 |
T |
|
| Q |
112 |
ctcaaaccattctctcttcacctagtgctagtgctagtcttttcaacaaaacacaaaccttagtaatcatcattcaacacaacatgcagatctcacttct |
211 |
Q |
| |
|
| ||||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||| || |||| || |
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|
| T |
51807354 |
c------cattccctcttcacctattgctagt------cttttcaacaaaacacaaaccttattaatcatt--------caacatgctgacctcaattaa |
51807433 |
T |
|
| Q |
212 |
tcatgagctagtttctggaactccaatcatatttgatcagttccaaaattccgttaacagatacttacttgattctacctctcatcaatgtcaatatcca |
311 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||||||| |||||||| |||||||||||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
51807434 |
tcatgagctagttgttggaactccaatcatatatcatcagtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatcca |
51807533 |
T |
|
| Q |
312 |
tccaaacatcaaagcaaaagtaagactttcatttcctttacagacgaatcatgaaaatcgatct-------gtatttatggttttaccaatatagagtgc |
404 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||| ||| | | ||||| ||||||||||||| ||||||||| |
|
|
| T |
51807534 |
tccaagcatcaaagcaaaagtaagactttcttttccttgacagatgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatagagtgc |
51807633 |
T |
|
| Q |
405 |
tttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctagaaaggctgatagtctctcacaaaaagtccaagaacatggtgagtacccttg |
504 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
51807634 |
ttt--attgtttcaggtttaacaaattcgaacaagaaaagacttgctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttg |
51807731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 245 - 511
Target Start/End: Original strand, 51779764 - 51780046
Alignment:
| Q |
245 |
tgatcagttccaaaattccgttaacagatacttacttgattctacctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcatt |
344 |
Q |
| |
|
||||||||| |||| ||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
51779764 |
tgatcagtttcaaagttcgataaacagatacatacttgattctgcctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcttt |
51779863 |
T |
|
| Q |
345 |
tcctttac---agacgaatcatgaaaatcgatct-------gtatttatggttttaccaatatagagtgctttttattgtttcaggtttaacaaattcga |
434 |
Q |
| |
|
||||| || |||||||||||||| ||| | | ||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
51779864 |
tccttgacgacagacgaatcatgaacatctaatttcgctaggtattgaatgttttaccaatatagagtgcttt--attgtttcaggtttaacaaattcaa |
51779961 |
T |
|
| Q |
435 |
acaagaaaaggcttgctaga----aaggctgatagtctctcacaaaaagtccaagaacatg----gtgagtacccttgtaagact |
511 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51779962 |
acaagaaaaggcttgctagctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact |
51780046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 621 - 767
Target Start/End: Original strand, 51780133 - 51780280
Alignment:
| Q |
621 |
tttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaaga-gaaattgagcttaggggctcaaattct |
719 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||| | || ||| ||||||||||||||| ||||||| |
|
|
| T |
51780133 |
tttctaatcctattttatataattctgaaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattct |
51780232 |
T |
|
| Q |
720 |
tcaagtgggtggagtggagaaagtgtttatgcggtattttagtgtgag |
767 |
Q |
| |
|
| |||||||||||||||| ||| | ||||||| |||||||||||||| |
|
|
| T |
51780233 |
ttaagtgggtggagtggataaattttttatgcactattttagtgtgag |
51780280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 648 - 766
Target Start/End: Original strand, 51807869 - 51807988
Alignment:
| Q |
648 |
aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaatt-gagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtt |
746 |
Q |
| |
|
|||||||||| ||| || |||||||||| ||| ||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51807869 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
51807968 |
T |
|
| Q |
747 |
tatgcggtattttagtgtga |
766 |
Q |
| |
|
|| || ||||||||||||| |
|
|
| T |
51807969 |
tacgcaatattttagtgtga |
51807988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 51803358 - 51803460
Alignment:
| Q |
14 |
gattcacatcctacttttaatccctttaaatactacatacttagaatacaaatggactgatcaaaccaagcaagc-ta---agcttcctctaatagctca |
109 |
Q |
| |
|
||||||| || ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
51803358 |
gattcacttcttacttttcattcctttaaatactacatacttagaatacaaagggactgatcaaaccaaacaagcatagctagcttcctctaatagctca |
51803457 |
T |
|
| Q |
110 |
aac |
112 |
Q |
| |
|
||| |
|
|
| T |
51803458 |
aac |
51803460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 666 - 767
Target Start/End: Original strand, 51803934 - 51804036
Alignment:
| Q |
666 |
gagcaaacatttctgaaacaattaagagaaa-ttgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtttatgcggtattttagtgt |
764 |
Q |
| |
|
|||||||||| ||| ||||||| ||||| | |||| |||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
51803934 |
gagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaattcttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgt |
51804033 |
T |
|
| Q |
765 |
gag |
767 |
Q |
| |
|
||| |
|
|
| T |
51804034 |
gag |
51804036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 51803596 - 51803681
Alignment:
| Q |
255 |
caaaattccgttaacagatacttacttgattctacctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagacttt |
340 |
Q |
| |
|
||||| || |||||||||||||||||||||||| || |||||||||||||| | || ||||||| |||| ||||||||| ||||| |
|
|
| T |
51803596 |
caaaaatcagttaacagatacttacttgattctgccactcatcaatgtcaactttcaaccaaacaacaaaacaaaagtaaaacttt |
51803681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 455 - 511
Target Start/End: Original strand, 51803796 - 51803852
Alignment:
| Q |
455 |
aaggctgatagtctctcacaaaaagtccaagaacatggtgagtacccttgtaagact |
511 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
51803796 |
aaggccgatagtctctcacaaagagttcaagaacatggtgagtaccctagtaagact |
51803852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 136; Significance: 2e-70; HSPs: 2)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 245 - 511
Target Start/End: Original strand, 6406 - 6688
Alignment:
| Q |
245 |
tgatcagttccaaaattccgttaacagatacttacttgattctacctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcatt |
344 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6406 |
tgatcagtttcaaaattcgattaacagatacatacttgattctgcctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcttt |
6505 |
T |
|
| Q |
345 |
tcctt---tacagacgaatcatgaaaa-------tcgatctgtatttatggttttaccaatatagagtgctttttattgtttcaggtttaacaaattcga |
434 |
Q |
| |
|
||||| |||||||||||||||| | ||| | ||||| | |||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
6506 |
tccttgacgacagacgaatcatgaatatcaaatttcgctaggtattgaatgttttaccaatatagagtgc--tttattgtttcaggtttaacaaattcaa |
6603 |
T |
|
| Q |
435 |
acaagaaaaggctt----gctagaaaggctgatagtctctcacaaaaagtccaagaacatg----gtgagtacccttgtaagact |
511 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6604 |
acaagaaaaggcttgctagctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact |
6688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 621 - 767
Target Start/End: Original strand, 6775 - 6922
Alignment:
| Q |
621 |
tttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaaga-gaaattgagcttaggggctcaaattct |
719 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||| | || ||| ||||||||||||||| ||||||| |
|
|
| T |
6775 |
tttctaatcctattttatataattctgaaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattct |
6874 |
T |
|
| Q |
720 |
tcaagtgggtggagtggagaaagtgtttatgcggtattttagtgtgag |
767 |
Q |
| |
|
| |||||||||||||||| ||| | ||||||| |||||||||||||| |
|
|
| T |
6875 |
ttaagtgggtggagtggataaattttttatgcactattttagtgtgag |
6922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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