View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026-Insertion-5 (Length: 745)
Name: NF5026-Insertion-5
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 4e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 385 - 605
Target Start/End: Original strand, 46300492 - 46300711
Alignment:
| Q |
385 |
caactgttaaattaaattattnnnnnnnttaaaatgtttagaaacatgttgatctggttacaggttaattgaaataaaaaagtgagacacacacatgtcc |
484 |
Q |
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| T |
46300492 |
caactgttaaattaaatttttaaaaaaattaaaatgtttagaaacatgttgatcaggttacaggttaattgaaataaaaaagtgagacaca----tgtcc |
46300587 |
T |
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| Q |
485 |
a-ttcttatttagtggatgtgaccctagcta--gcatttctcaaacagtaaatcattataacatagaatttgctgctgaagggtggttatatcaagtaat |
581 |
Q |
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| T |
46300588 |
aattcttattaagtggatgtaaccctagctatagcatttctgaaacagtaaatcattataacatagaatttgctgctgaagggtggttatatcaagtaat |
46300687 |
T |
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| Q |
582 |
catcaactccacggcggcacacag |
605 |
Q |
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| T |
46300688 |
catcaactccacggcggcacacag |
46300711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 34726356 - 34726450
Alignment:
| Q |
215 |
atgtctcatgtaacttgcaaggtaaactcttaagtaaataagaaagacaacaaagaagagtggtgttaagcatttcaattttataaacagttttc |
309 |
Q |
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| T |
34726356 |
atgtctcatgtaacttgcaaggcaaactcttgagtaaataagcaggagagcaaagaagagtggtgttaagcatttcaatttttcaaacagttttc |
34726450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 34725419 - 34725466
Alignment:
| Q |
8 |
tgatgaagcaagaggaatgcgctgactcactgcatgagttatggcttg |
55 |
Q |
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| T |
34725419 |
tgatgaagcaagaggaatgcactgactcattgcatgagttgtggcttg |
34725466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 38610280 - 38610333
Alignment:
| Q |
70 |
aaaaatatggcaataaacgtgaaataacatggattgatactctttgttgcaagg |
123 |
Q |
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| T |
38610280 |
aaaaatgtggcaatagatgtgaaataacctggattgatactcttggttgcaagg |
38610333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 38795065 - 38795118
Alignment:
| Q |
70 |
aaaaatatggcaataaacgtgaaataacatggattgatactctttgttgcaagg |
123 |
Q |
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| T |
38795065 |
aaaaatgtggcaatagatgtgaaataacctggattgatactcttggttgcaagg |
38795118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 34726241 - 34726295
Alignment:
| Q |
137 |
gacaattgaaaatccaataagatccatgaaatgaaataaatgaaaaatgaacggaactta |
196 |
Q |
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| T |
34726241 |
gacaattgaaaatccaatcagatcc-----atgaaataaatgaaaaatgaacagaactta |
34726295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 34730581 - 34730667
Alignment:
| Q |
223 |
tgtaacttgcaaggtaaactcttaagtaaataagaaagacaacaaagaagagtggtgttaagcatttcaattttataaacagttttc |
309 |
Q |
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| T |
34730581 |
tgtaacttgcaaggtaaactcttgcgtaaataagcaggacagcaaagaaatgtgacgttaagcatgtcaagttttaaaacatttttc |
34730667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 610 - 701
Target Start/End: Complemental strand, 20700405 - 20700314
Alignment:
| Q |
610 |
tctaagtctcggcgtgaaatcaaccctccttcgccagtgacccttccggatgatctcatcgccgaagtcctctcctttcttgacgtgaaatc |
701 |
Q |
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| T |
20700405 |
tctaagtttcggcatgaaatcaactctccttcgccggtaatcctcccggatgatctcatcgcggaagtcctggcctttcttgacgtgaaatc |
20700314 |
T |
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