View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5026-Insertion-6 (Length: 710)

Name: NF5026-Insertion-6
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5026-Insertion-6
NF5026-Insertion-6
[»] chr5 (5 HSPs)
chr5 (5-370)||(12870153-12870518)
chr5 (226-369)||(43469538-43469681)
chr5 (497-687)||(24394586-24394776)
chr5 (621-688)||(27598722-27598788)
chr5 (541-576)||(16842517-16842552)
[»] chr6 (12 HSPs)
chr6 (367-710)||(1118350-1118691)
chr6 (5-368)||(27765318-27765681)
chr6 (474-621)||(10374838-10374988)
chr6 (524-621)||(22885215-22885314)
chr6 (524-621)||(22903173-22903272)
chr6 (474-686)||(14448499-14448710)
chr6 (524-621)||(22918018-22918117)
chr6 (277-368)||(24848312-24848403)
chr6 (541-642)||(10289067-10289170)
chr6 (518-572)||(32668630-32668684)
chr6 (497-594)||(34208832-34208930)
chr6 (512-687)||(3904681-3904855)
[»] chr7 (12 HSPs)
chr7 (226-369)||(10646041-10646184)
chr7 (474-696)||(11918335-11918556)
chr7 (483-687)||(5299087-5299290)
chr7 (524-638)||(12505688-12505803)
chr7 (541-574)||(30226084-30226117)
chr7 (525-603)||(12484259-12484339)
chr7 (541-600)||(2076505-2076563)
chr7 (541-600)||(2082924-2082982)
chr7 (586-687)||(6629358-6629457)
chr7 (517-618)||(9732817-9732920)
chr7 (541-600)||(14984671-14984729)
chr7 (541-600)||(15414282-15414340)
[»] chr1 (7 HSPs)
chr1 (226-369)||(46566568-46566711)
chr1 (226-368)||(12606569-12606711)
chr1 (246-368)||(49195411-49195533)
chr1 (226-368)||(40908316-40908458)
chr1 (524-603)||(25123321-25123401)
chr1 (524-603)||(21433929-21434009)
chr1 (541-574)||(49086718-49086751)
[»] chr4 (9 HSPs)
chr4 (246-368)||(31525455-31525577)
chr4 (226-369)||(23538151-23538294)
chr4 (543-687)||(39668436-39668577)
chr4 (510-572)||(24608673-24608736)
chr4 (483-574)||(11865241-11865333)
chr4 (524-576)||(12607263-12607316)
chr4 (277-368)||(8652037-8652128)
chr4 (277-368)||(8663844-8663935)
chr4 (541-574)||(13268845-13268878)
[»] chr3 (7 HSPs)
chr3 (246-368)||(33365925-33366047)
chr3 (524-687)||(43902050-43902211)
chr3 (523-594)||(10082380-10082452)
chr3 (541-603)||(8531391-8531453)
chr3 (523-618)||(10189280-10189377)
chr3 (541-684)||(19583927-19584069)
chr3 (524-584)||(27716326-27716387)
[»] chr2 (12 HSPs)
chr2 (226-369)||(3081202-3081345)
chr2 (300-369)||(10983161-10983229)
chr2 (541-687)||(21713366-21713511)
chr2 (517-645)||(15324990-15325119)
chr2 (508-687)||(31067499-31067679)
chr2 (475-620)||(18593508-18593653)
chr2 (474-584)||(40588739-40588850)
chr2 (541-696)||(17395555-17395709)
chr2 (546-687)||(8944737-8944876)
chr2 (497-645)||(17841201-17841348)
chr2 (544-603)||(20186609-20186668)
chr2 (509-573)||(28645793-28645858)
[»] chr8 (2 HSPs)
chr8 (474-687)||(38802268-38802483)
chr8 (541-574)||(24482317-24482350)
[»] scaffold0238 (2 HSPs)
scaffold0238 (279-369)||(5099-5189)
scaffold0238 (226-286)||(5323-5383)
[»] scaffold0054 (1 HSPs)
scaffold0054 (524-621)||(8732-8831)
[»] scaffold0062 (1 HSPs)
scaffold0062 (541-574)||(2205-2238)


Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 370
Target Start/End: Complemental strand, 12870518 - 12870153
Alignment:
Q  5 acacatgaggtacttcatcgctctctcataaagaagaaggagttagaggaggaaagaatttggcattgaaaacataagagtgaatgggaatagcaaaaaa 104  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12870518 acacatgaggtacttcatcgctctctcagaaaaaagaaggagttagaggaggaaagagtttggcattgaaaacataagagtgaatgggaatagcaaaaaa 12870419  T
Q  105 gttgagagattggggagatagagagacacctcgggtaatacaaattcatttgaaaactgaatggacattgaaggttcattggtgggtagttggcagatag 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12870418 gttgagagattggggagatagagagacacctcgggtaatacgaattcatttgaaaactgaatggacattgaaggttcattagtgggtagttggcagatag 12870319  T
Q  205 ggtcagcacttgatgcaagcttgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagg 304  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||  |||||  ||||||||||||||||||||||||||    
T  12870318 ggtcagcacttaatgcaagcttgaaaagtcatcagatcaaaggctgagatttagggtgtggttggttgttgaagttagcattaattacggattagggagg 12870219  T
Q  305 gaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggattc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12870218 gaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttatagtaaaggattc 12870153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 43469538 - 43469681
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||| || |||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||| |||||||||||  ||||||||||||||    
T  43469538 tgaaaggtcttccgatcaaaggctgagatttagggtgtggttggcagatgaaattaacattaattacggatttgggagggaaaataagaagtgattaggg 43469637  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43469638 caacactgccagctcatcaagtctggcttttataataaaggatt 43469681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 497 - 687
Target Start/End: Original strand, 24394586 - 24394776
Alignment:
Q  497 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 595  Q
    ||||| ||||||||||||| ||||||  || ||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  24394586 ttaaattaaattgcagaaagtaaatgatacgagttatttgttaacccatttcggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatc 24394685  T
Q  596 gactataa-aatattagtttgaagtccctacgtaaactacctccggtttac-aggtttcgcacctaatcactacccggtgatatttctatctaa 687  Q
     ||||||| | |||| ||||||||| ||| ||| ||| |||||||||||||  |  |||||||||||||| || ||  ||||||||||||||||    
T  24394686 cactataatagtatttgtttgaagt-cctgcgt-aacaacctccggtttacttgccttcgcacctaatcatta-cctatgatatttctatctaa 24394776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 621 - 688
Target Start/End: Original strand, 27598722 - 27598788
Alignment:
Q  621 cctacgtaaactacctccggtttacaggtttcgcacctaatcactacccggtgatatttctatctaaa 688  Q
    ||||| ||||| |||||||||||||  ||||||||||||||||||| |  ||||||||||||||||||    
T  27598722 cctacataaacaacctccggtttactagtttcgcacctaatcacta-cttgtgatatttctatctaaa 27598788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 576
Target Start/End: Original strand, 16842517 - 16842552
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcat 576  Q
    |||||||||||||||||||||||||||||| |||||    
T  16842517 ccagttcggtgcaacgtcacctacatctggaggcat 16842552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 367 - 710
Target Start/End: Original strand, 1118350 - 1118691
Alignment:
Q  367 attcatgataaaaacaaagataattgaaattctggtaggtagtaaaatatgtcgaacatgatgtcaaaacatacggaatgtcgagcacaatgtaattaac 466  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1118350 attcatgataaaaacaaagataattgaaattctggcaggtagtaaaatatgtcgaacatgatgtcaaaacatacggaatgtcgagcacaatgtaattaac 1118449  T
Q  467 aacttagcaacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaaccagttcggtgcaacgtcacctacat 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||    
T  1118450 aacttagcaacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaattagttaggtgcaacgtcacctacat 1118549  T
Q  567 ctgggggcattcaagctatgaaggaaatcgactataaaatattagtttgaagtccctacgtaaactacctccggtttacaggtttcgcacctaatcacta 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  1118550 ctgggggcattcaagctatgaaggaaatcgactataaaatattagtttgaagt-cctacataaactacctccggtttacagctttcgcacctaatcacta 1118648  T
Q  667 cccggtgatatttctatct-aaacacacctaaaatatgagacacc 710  Q
    ||| ||||||||||||||| |||||||||| ||||||||||||||    
T  1118649 ccc-gtgatatttctatctaaaacacacct-aaatatgagacacc 1118691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 5 - 368
Target Start/End: Complemental strand, 27765681 - 27765318
Alignment:
Q  5 acacatgaggtacttcatcgctctctcataaagaagaaggagttagaggaggaaagaatttggcattgaaaacataagagtgaatgggaatagcaaaaaa 104  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27765681 acacgtgaggtacttcatcgctctctcagaaagaagaaggagttagaggaggaaagagtttggcattgaaaacataagagtgaatgggaatagcaaaaaa 27765582  T
Q  105 gttgagagattggggagatagagagacacctcgggtaatacaaattcatttgaaaactgaatggacattgaaggttcattg------gtgggtagttggc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||    
T  27765581 gttgagagattggggagatagagagacacctcgggtaatacaaattcatttgaaaactgaatggacattgaaggttcattggtgttagtgggtagttggc 27765482  T
Q  199 agatagggtcagcacttgatgcaagcttgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggatta 298  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||||| || |||||||  |||||||||||||||||||||||||||||||| ||||||    
T  27765481 agatagggtcagcacttaatgcaaatttgaaaggtcatcagatcaaagactaagatttatggtgtggttggcagttgagattagcattaattatggatta 27765382  T
Q  299 gggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    |||||||||||||| ||||||||||||||      |||||||||||||||| ||||| ||||||||||||    
T  27765381 gggagggaaaaacaaaagtgattagggca------ccagctcatcaagtctagctttaataataaaggat 27765318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 474 - 621
Target Start/End: Complemental strand, 10374988 - 10374838
Alignment:
Q  474 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggg 572  Q
    |||||||| |||||| |||||| ||||||||||||||||||| |||||| |||||| |||| | ||| ||||||  |||||||||||||||||| |||||    
T  10374988 caacacaaataacaattaacaacttaaagtaaattgcagaaagtaaatgacacaaggtattagttaacccagtttagtgcaacgtcacctacatttgggg 10374889  T
Q  573 gc-attcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    || |||||||| | |||||||| | ||||||| | ||||||||||||||||    
T  10374888 gcaattcaagccaggaaggaaaaccactataatagtattagtttgaagtcc 10374838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 524 - 621
Target Start/End: Complemental strand, 22885314 - 22885215
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||| | ||||||||||||||||    
T  22885314 cacaagatatttgttaacccagtacggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatctactataatagtattagtttgaagtcc 22885215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 524 - 621
Target Start/End: Complemental strand, 22903272 - 22903173
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||||||| ||| ||||| | |||| ||||| ||||||| | ||||||||||||||||    
T  22903272 cacaagatatttgttaacccagtgcggtgcaacgtcacctacatctggggacatccaagccaggaagaaaatctactataatagtattagtttgaagtcc 22903173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 474 - 686
Target Start/End: Complemental strand, 14448710 - 14448499
Alignment:
Q  474 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggg 572  Q
    |||||||| || |||||||||| ||||||  || | | ||||  ||| || |||||||||||| ||||| |||||||||||||||||| || ||||  ||    
T  14448710 caacacaaatagcaaataacaaattaaagataaataccgaaagaaaaaggtacaagttatttgttaacctagttcggtgcaacgtcacttagatcttagg 14448611  T
Q  573 gcattcaagctatgaaggaaatcgacta-taaaatattagtttgaagtccctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgg 671  Q
    ||  ||||||   |||||||||| |||| || | |||||||||||||  ||| | ||||| ||||||||| |||    ||||||||||||| ||||||      
T  14448610 gctatcaagcctagaaggaaatccactattatagtattagtttgaag--cctgcataaacaacctccggtctactaaattcgcacctaatctctaccc-a 14448514  T
Q  672 tgatatttctatcta 686  Q
    |||||||||||||||    
T  14448513 tgatatttctatcta 14448499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 621
Target Start/End: Complemental strand, 22918117 - 22918018
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||||| |||  |||||||||||||||||||||| || ||| ||||| | |||||||||| |  |||| | ||||||||||||||||    
T  22918117 cacaagatatttgttaacccagtatggtgcaacgtcacctacatctgaggacatccaagccaggaaggaaatctataataatagtattagtttgaagtcc 22918018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 24848312 - 24848403
Alignment:
Q  277 gattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    ||||| |||||||||||| |||||||| |||||  ||||  |||||||||||   ||| ||||   ||||||| ||||||||||||||||||    
T  24848312 gattaacattaattacggtttagggagcgaaaatgagaatagattagggcaaacatgctagcttggcaagtctagcttttataataaaggat 24848403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 642
Target Start/End: Original strand, 10289067 - 10289170
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa---aatattagtttgaagtccctacgtaaactacctc 637  Q
    |||||||||||||| ||||| || ||||||||||||  | | || |||||||||| |||||||    ||||||||||||||| |||| || ||| |||||    
T  10289067 ccagttcggtgcaatgtcacttatatctgggggcatctacgttaggaaggaaatccactataatagtatattagtttgaagt-cctatgtgaacaacctc 10289165  T
Q  638 cggtt 642  Q
    |||||    
T  10289166 cggtt 10289170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 572
Target Start/End: Original strand, 32668630 - 32668684
Alignment:
Q  518 aaatggcacaagttatttgctaaccagttcggtgcaacgtcacctacatctgggg 572  Q
    ||||| |||||||| ||||  | |||||||||||||| |||||||||||||||||    
T  32668630 aaatgacacaagttgtttgtaacccagttcggtgcaaagtcacctacatctgggg 32668684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 594
Target Start/End: Original strand, 34208832 - 34208930
Alignment:
Q  497 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaat 594  Q
    |||||||||| ||||| ||  ||||  |||||  |||||||||||| |||||||||||| || |||||||||||  ||||| | ||| |||||||||||    
T  34208832 ttaaagtaaaatgcaggaaggaaataacacaaagtatttgctaacccagttcggtgcaatgttacctacatctgatggcatccgagccatgaaggaaat 34208930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 687
Target Start/End: Complemental strand, 3904855 - 3904681
Alignment:
Q  512 gaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tatt 609  Q
    |||| |||| |||||||| |||||| ||||| ||||||||| |||||| ||||| | |||||  |  ||||| | |||||||||| ||||||| | ||||    
T  3904855 gaaaataaaaggcacaagatatttgttaacctagttcggtgaaacgtcccctacgtttggggctac-caagccaggaaggaaatcaactataatagtatt 3904757  T
Q  610 agtttgaagtccctacgtaaactacctccggtttacaggtttcgcacctaatcactacccggtgatatttctatctaa 687  Q
    | ||  |||||| || || ||| ||||||||||||  |  ||| ||| ||||||||||||| ||||||||||||||||    
T  3904756 aattgaaagtcc-tatgtgaacaacctccggtttatcgccttctcacttaatcactacccg-tgatatttctatctaa 3904681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 10646041 - 10646184
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  10646041 tgaatggtcatcagatcaaaggctgagatttagggtgtggttggcagatgagattagcattaattacggatttgggagggaaaataagaagtgattaggg 10646140  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  10646141 caacactgccagctcatcaagtctggcttttagaataaaggatt 10646184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 474 - 696
Target Start/End: Complemental strand, 11918556 - 11918335
Alignment:
Q  474 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaac-cagttcggtgcaacgtcacctacatctgggg 572  Q
    |||||||| |||| |  ||||| ||||||||||||| || || |||||  |||||  |||||| |||| ||||| |||||||| ||||||||||||||||    
T  11918556 caacacaaataaccataaacaacttaaagtaaattgtaggaagtaaataacacaaagtatttgttaactcagttgggtgcaacatcacctacatctgggg 11918457  T
Q  573 gcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtccctacgtaaactacctccggtttacaggtttcgcacctaatcactacccgg 671  Q
    |||  ||||| |||||||||||  | | ||| | | |||||||||||| |||| |||||| ||||| ||||||| |  || ||||||||||||||||| |    
T  11918456 gcagccaagccatgaaggaaat--attgtaatagttttagtttgaagt-cctatgtaaacaacctctggtttactgccttggcacctaatcactaccc-g 11918361  T
Q  672 tgatatttctatctaa-acacaccta 696  Q
    |||||||||||||||| |||||||||    
T  11918360 tgatatttctatctaagacacaccta 11918335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 483 - 687
Target Start/End: Original strand, 5299087 - 5299290
Alignment:
Q  483 taacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggggcattcaag 581  Q
    ||||||||||||| ||||||  ||  || |||| |||||||||||||||||| | ||| |||||| ||| |||| || |||| |||| |||||   ||||    
T  5299087 taacaaataacaacttaaagataaaagctgaaagtaaatggcacaagttattcgttaacccagtttggtacaacatcgcctagatctaggggctaccaag 5299186  T
Q  582 ctatgaaggaaatcgactataa-aatattagtttgaagtccctacgtaaactacctccggtttacaggtttcgcacctaatcactacccggtgatatttc 680  Q
    | | |||||||||| ||||||| | ||||| |||||||  | | | ||||| |||||  | ||||  | |||||||||||||||||||| |||| |||||    
T  5299187 ccaggaaggaaatccactataatagtattattttgaag--catgcataaacaacctcaagattactagcttcgcacctaatcactaccc-gtgaaatttc 5299283  T
Q  681 tatctaa 687  Q
    |||||||    
T  5299284 tatctaa 5299290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 524 - 638
Target Start/End: Original strand, 12505688 - 12505803
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatct-gggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtc 620  Q
    |||||| |||||| ||||| ||||||||| |||||||||||||||| ||||||   ||||||| |||||||||| ||||||| | ||| |||||||||      
T  12505688 cacaagatatttgttaacccagttcggtgtaacgtcacctacatctggggggctaccaagctaggaaggaaatctactataatagtatcagtttgaag-- 12505785  T
Q  621 cctacgtaaactacctcc 638  Q
    ||| ||||||||| ||||    
T  12505786 ccttcgtaaactatctcc 12505803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 574
Target Start/End: Original strand, 30226084 - 30226117
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    ||||||||||||||||||||||||||||||||||    
T  30226084 ccagttcggtgcaacgtcacctacatctgggggc 30226117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 525 - 603
Target Start/End: Original strand, 12484259 - 12484339
Alignment:
Q  525 acaagttatttgctaacca-gttcggtgcaacgtcacctacatct-gggggcattcaagctatgaaggaaatcgactataa 603  Q
    ||||| |||||| |||||| |||||||| |||||||||||||||| ||||||   ||||||| |||||||||| |||||||    
T  12484259 acaagatatttgttaaccaagttcggtgtaacgtcacctacatctggggggctaccaagctaggaaggaaatctactataa 12484339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 2076505 - 2076563
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgacta 600  Q
    |||||||||||||||||||||||| |||||||||   ||||| |||||||||||| ||||    
T  2076505 ccagttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2076563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 2082924 - 2082982
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgacta 600  Q
    |||||||||||||||||||||||| |||||||||   ||||| |||||||||||| ||||    
T  2082924 ccagttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2082982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 687
Target Start/End: Complemental strand, 6629457 - 6629358
Alignment:
Q  586 gaaggaaatcgactataaaa-tattagtttgaagtccctacgtaaactacctccggtttacaggtttcgcacctaatcactacccggtgatatttctatc 684  Q
    |||||||||| ||||||| | |||||||||||||  ||| | ||||| || | | ||||||  ||||||||||||||||||||||  |||||||||||||    
T  6629457 gaaggaaatccactataatagtattagtttgaag--cctgcataaacaactttcagtttactagtttcgcacctaatcactaccc-atgatatttctatc 6629361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 618
Target Start/End: Complemental strand, 9732920 - 9732817
Alignment:
Q  517 taaatggcacaagttatttgctaac-cagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactata-aaatattagttt 614  Q
    |||| |||||||||| |||| |||| |||||| ||||||||||||||| ||||||||||   ||||| ||||| |||||  ||||||  ||||||| |||    
T  9732920 taaaaggcacaagttgtttgttaactcagttcagtgcaacgtcacctagatctgggggctaccaagccatgaacgaaattcactatagcaatattaattt 9732821  T
Q  615 gaag 618  Q
    ||||    
T  9732820 gaag 9732817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 14984671 - 14984729
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgacta 600  Q
    |||||||||||||||||||||||| |||||||||  |||||| | |||||||||| ||||    
T  14984671 ccagttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 14984729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 15414282 - 15414340
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgacta 600  Q
    |||||||||||||||||||||||| |||||||||  |||||| | |||||||||| ||||    
T  15414282 ccagttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 15414340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 7e-54; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 226 - 369
Target Start/End: Complemental strand, 46566711 - 46566568
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||  ||| |||||||||||  ||||||||||||||    
T  46566711 tgaaaggtcatcagatcaaaggctgagatttaggatgtggttggcagatgagattagcattaattacaaatttgggagggaaaataagaagtgattaggg 46566612  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  46566611 caacactgccagctcatcaaatctggcttttataataaaggatt 46566568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 226 - 368
Target Start/End: Original strand, 12606569 - 12606711
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||  || |||||||||||    
T  12606569 tgaaaggtcatcagatcaaaggctgagatttagggtgtggttggcagatgggattagcattaattatggattagggagggaaaataaggagtgattaggg 12606668  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    ||||||||||||| |||||||||||||||||||| ||||||||    
T  12606669 caacactgccagcacatcaagtctggcttttatagtaaaggat 12606711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 246 - 368
Target Start/End: Original strand, 49195411 - 49195533
Alignment:
Q  246 ggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaa 345  Q
    ||||| ||||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49195411 ggctgtgatttagtgtgtggttggcagatgagattaacattaattacagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaa 49195510  T
Q  346 gtctggcttttataataaaggat 368  Q
    |||||||||||||||||||||||    
T  49195511 gtctggcttttataataaaggat 49195533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 226 - 368
Target Start/End: Complemental strand, 40908458 - 40908316
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||||| | | ||| ||||||||||||  ||||||||||||| |||||||| |||||| | |   ||||||||||||||  ||   |||||||||    
T  40908458 tgaaaggtcatgaaagcaacggctgagatttaacgtgtggttggcagatgagattaacattaaattcatgttagggagggaaaatgagggatgattaggg 40908359  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  40908358 caacactgccagctcatcaagtctggcttttatagtaaaggat 40908316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 524 - 603
Target Start/End: Original strand, 25123321 - 25123401
Alignment:
Q  524 cacaagttatttgctaac-cagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa 603  Q
    |||||| |||||| |||| || ||||||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||    
T  25123321 cacaaggtatttgttaacacaattcggtgtaacgtcacctacatgtgggggcattcaagccatgaaggaaatccactataa 25123401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 524 - 603
Target Start/End: Original strand, 21433929 - 21434009
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa 603  Q
    ||||||||||||||||||| | ||| ||||||| ||||||||||||| |||||||||||  | |||||||||| |||||||    
T  21433929 cacaagttatttgctaacccaattcagtgcaacttcacctacatctgagggcattcaagtcaagaaggaaatccactataa 21434009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Complemental strand, 49086751 - 49086718
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    |||||||||||||||||||||||||| |||||||    
T  49086751 ccagttcggtgcaacgtcacctacatgtgggggc 49086718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 7e-51; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 246 - 368
Target Start/End: Original strand, 31525455 - 31525577
Alignment:
Q  246 ggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaa 345  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31525455 ggctgtgatttagtgtgtggttggcagttgagattaacattaattacagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaa 31525554  T
Q  346 gtctggcttttataataaaggat 368  Q
    |||||||||||||||||||||||    
T  31525555 gtctggcttttataataaaggat 31525577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 23538151 - 23538294
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||  |  |||||||||||    
T  23538151 tgaaaggtcatcagatcaaaggccgagatttagggtgtggttggcagatgagattagcattaattacagattagggaggaaaaataatgagtgattaggg 23538250  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||    
T  23538251 caacactgctagctcatcaagtctgactttaataataaaggatt 23538294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 543 - 687
Target Start/End: Complemental strand, 39668577 - 39668436
Alignment:
Q  543 agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtccctacgtaaactacctccggt 641  Q
    |||||||||||||||||  ||||||||||||| | ||| ||| |||||||||  | ||||| | ||||| |||||||  ||| | ||||| |||||| ||    
T  39668577 agttcggtgcaacgtcatttacatctgggggc-tccaacctaggaaggaaattcattataatagtattactttgaag--cctgcataaacaacctcctgt 39668481  T
Q  642 ttacaggtttcgcacctaatcactacccggtgatatttctatctaa 687  Q
    ||||  | |||||||||||||||||||| |||||||||||||||||    
T  39668480 ttactagcttcgcacctaatcactaccc-gtgatatttctatctaa 39668436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 572
Target Start/End: Original strand, 24608673 - 24608736
Alignment:
Q  510 cagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggg 572  Q
    |||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  24608673 cagaaagtaaaaggcacaagttatttgttaacccagttcggtgcaacgtcacctacgtctgggg 24608736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 574
Target Start/End: Complemental strand, 11865333 - 11865241
Alignment:
Q  483 taacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    ||||||||||||| ||||||  ||  ||| ||| |||| ||||||||||||||| ||| ||||||||||||||||||  |||| |||||||||    
T  11865333 taacaaataacaacttaaagataaaggcaaaaagtaaaaggcacaagttatttgttaacccagttcggtgcaacgtcttctacgtctgggggc 11865241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 576
Target Start/End: Original strand, 12607263 - 12607316
Alignment:
Q  524 cacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggggcat 576  Q
    |||||| |||||| ||| |||||||||||||||||||||||||||||| |||||    
T  12607263 cacaagatatttgataatccagttcggtgcaacgtcacctacatctggaggcat 12607316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 8652037 - 8652128
Alignment:
Q  277 gattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    ||||| |||||||||||| |||||||||||||   ||||  |||||||||||   ||| ||||   ||||||| ||||||||||||||||||    
T  8652037 gattaacattaattacggtttagggagggaaactgagaatggattagggcaagcatgctagcttggcaagtctagcttttataataaaggat 8652128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 8663844 - 8663935
Alignment:
Q  277 gattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 368  Q
    ||||| |||||||||||| |||||||||||||   ||||  |||||||||||   ||| ||||   ||||||| ||||||||||||||||||    
T  8663844 gattaacattaattacggtttagggagggaaactgagaatggattagggcaagcatgctagcttggcaagtctagcttttataataaaggat 8663935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Original strand, 13268845 - 13268878
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    ||||||||||||||| ||||||||||||||||||    
T  13268845 ccagttcggtgcaacttcacctacatctgggggc 13268878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 246 - 368
Target Start/End: Complemental strand, 33366047 - 33365925
Alignment:
Q  246 ggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaa 345  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33366047 ggctgtgatttagtgtgtggttggcagttgagattaacattaattatagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaa 33365948  T
Q  346 gtctggcttttataataaaggat 368  Q
    |||||||||||||||||||||||    
T  33365947 gtctggcttttataataaaggat 33365925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 524 - 687
Target Start/End: Complemental strand, 43902211 - 43902050
Alignment:
Q  524 cacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||| ||| |||||||||||||||||||||| ||||||| | ||||| | ||| |||||| ||||||| | ||||||||||||||      
T  43902211 cacaaggtatttgttaatccaattcggtgcaacgtcacctacatttgggggc-tccaagccaggaaagaaatctactataacagtattagtttgaagt-- 43902115  T
Q  622 ctacgtaaactacctccggtttacaggtttcgcacctaatcactacccggtgatatttctatctaa 687  Q
    |||| ||||| ||||| |||||||  | |||||||||||||||||||| |||||||| ||||||||    
T  43902114 ctacataaacaacctctggtttactagcttcgcacctaatcactaccc-gtgatattcctatctaa 43902050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 594
Target Start/End: Complemental strand, 10082452 - 10082380
Alignment:
Q  523 gcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaat 594  Q
    ||||||||| |||| ||||| |||||||||||||||||||||||||| |||||   ||||||| |||||||||    
T  10082452 gcacaagttgtttgttaacccagttcggtgcaacgtcacctacatctaggggctaccaagctaggaaggaaat 10082380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 603
Target Start/End: Original strand, 8531391 - 8531453
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa 603  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| |  ||||||||| |||||||    
T  8531391 ccagttcggtgcaacgtcacctacctctggtggcatccaagccagaaaggaaatccactataa 8531453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 618
Target Start/End: Complemental strand, 10189377 - 10189280
Alignment:
Q  523 gcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactat-aaaatattagtttgaag 618  Q
    ||||||||| |||| ||||| |||||||||||||||||||||||| | |||||   ||||||| |||||||||  ||||| | ||||||| |||||||    
T  10189377 gcacaagttgtttgttaacccagttcggtgcaacgtcacctacatgtaggggctaccaagctaggaaggaaattcactatgataatattaatttgaag 10189280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 684
Target Start/End: Complemental strand, 19584069 - 19583927
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtccctacgtaaactacctccg 639  Q
    ||||||| |||||| ||||||||||||| |||| || ||||| | |||| ||||| ||||||| | |||||||| ||||| |||| || ||| ||| |||    
T  19584069 ccagttcagtgcaatgtcacctacatctaggggaatccaagccaggaagaaaatccactataatagtattagttcgaagt-cctatgtgaacaacccccg 19583971  T
Q  640 gtttacaggtttcgcacctaatcactacccggtgatatttctatc 684  Q
    ||| ||    ||| |||| ||||||||||| ||||||||||||||    
T  19583970 gttcactaccttctcaccgaatcactaccc-gtgatatttctatc 19583927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 584
Target Start/End: Original strand, 27716326 - 27716387
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagcta 584  Q
    |||||| |||||| ||||| ||||| |||||||||||||||||| || |||||| |||||||    
T  27716326 cacaagatatttggtaacctagttcagtgcaacgtcacctacatatgcgggcatccaagcta 27716387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 226 - 369
Target Start/End: Complemental strand, 3081345 - 3081202
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattacggattagggagggaaaaacagaagtgattaggg 325  Q
    ||||||||||| | | ||| ||||||||||||  ||||| ||||||| |||||||| |||||| | ||  ||||||||||||||  ||   |||||||||    
T  3081345 tgaaaggtcatgaaagcaacggctgagatttaatgtgtgattggcagatgagattaacattaaatgcgtgttagggagggaaaatgagggatgattaggg 3081246  T
Q  326 caacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  3081245 caacactgccagctcatcaagtctggctttaatagtaaaggatt 3081202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 10983161 - 10983229
Alignment:
Q  300 ggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    |||||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10983161 ggagggaaaatcaggattgattagggcaa-actgccagctcatcaagtctggcttttataataaaggatt 10983229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 541 - 687
Target Start/End: Complemental strand, 21713511 - 21713366
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtccctacgtaaactacctccg 639  Q
    |||||| |||||||| |||||||||| | ||||||| ||| | | |||||||||| ||||||| | |||||||||||||||  |  |||||| ||||| |    
T  21713511 ccagtttggtgcaacatcacctacatgtaggggcatccaaaccaggaaggaaatccactataatagtattagtttgaagtca-tgtgtaaacaacctctg 21713413  T
Q  640 gtttacaggtttcgcacctaatcactacccggtgatatttctatctaa 687  Q
    |||||| |  ||||||||||||||||||||  ||||||||||||||||    
T  21713412 gtttactgccttcgcacctaatcactaccc-atgatatttctatctaa 21713366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 645
Target Start/End: Original strand, 15324990 - 15325119
Alignment:
Q  517 taaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagttt 614  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||   ||||| ||||| | |||| ||||| ||||||| | |||||||||    
T  15324990 taaatggcacaagttatttgttaacccagttcggtgcaacttcaccaacatcttaaggcatccaagccaggaagaaaatctactataatagtattagttt 15325089  T
Q  615 gaagtccctacgtaaactacctccggtttac 645  Q
     |||| ||||||||||| |||| ||||||||    
T  15325090 aaagt-cctacgtaaacaaccttcggtttac 15325119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 508 - 687
Target Start/End: Complemental strand, 31067679 - 31067499
Alignment:
Q  508 tgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aa 605  Q
    |||| ||| |||||| ||||||||||||| ||||| |||| ||||||||||||||||| |||||||||   |||   | |||||||||| ||||||| |     
T  31067679 tgcaaaaagtaaatgacacaagttatttgttaacctagtttggtgcaacgtcacctacgtctgggggctaccaattcaggaaggaaatccactataatag 31067580  T
Q  606 tattagtttgaagtccctacgtaaactacctccggtttac-aggtttcgcacctaatcactacccggtgatatttctatctaa 687  Q
    |||||||||||||| |||||| |||| ||||| ||||| |  |  ||| ||||||||||||||||  ||||||||||||||||    
T  31067579 tattagtttgaagt-cctacggaaacaacctctggtttgcttgccttcacacctaatcactaccc-atgatatttctatctaa 31067499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 475 - 620
Target Start/End: Original strand, 18593508 - 18593653
Alignment:
Q  475 aacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctggggg 573  Q
    ||||||| ||||||  ||||| || |||||||||| || || |||||  |||||  |||||| ||||| |||||||||||| ||||||||||||| ||||    
T  18593508 aacacaaataacaataaacaaatttaagtaaattgtaggaagtaaataacacaaagtatttgttaacccagttcggtgcaatgtcacctacatct-gggg 18593606  T
Q  574 cattcaagctatgaaggaaatcgactataa-aatattagtttgaagtc 620  Q
    ||| ||||| | ||||| |||| ||||||| |||||||||||||||||    
T  18593607 catccaagccaagaagg-aatccactataataatattagtttgaagtc 18593653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 584
Target Start/End: Complemental strand, 40588850 - 40588739
Alignment:
Q  474 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggg 572  Q
    |||||||||||| ||  ||||| ||||||| |||||||| || |||||  |||| | |||||| ||| |||||||| |||||||||||||||||||||||    
T  40588850 caacacaattaataataaacaaattaaagtcaattgcaggaagtaaataacacagggtatttgttaatccagttcgatgcaacgtcacctacatctgggg 40588751  T
Q  573 gcattcaagcta 584  Q
    | || |||||||    
T  40588750 gtatccaagcta 40588739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 541 - 696
Target Start/End: Original strand, 17395555 - 17395709
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtccctacgtaaactacctccg 639  Q
    |||||||||||||||||| ||||  | |||||||  |||||| | |||||||||| ||||||| | |||||||||||||  ||| | ||||| || ||||    
T  17395555 ccagttcggtgcaacgtcgcctaagtgtgggggctatcaagccaggaaggaaatccactataatagtattagtttgaag--cctgcataaacaacatccg 17395652  T
Q  640 gtttacaggtttcgcacctaatcactacccggtgatatttctatctaa-acacaccta 696  Q
    ||||||  | |||||||||||||||| ||| |||  |||||||||||| |||||||||    
T  17395653 gtttactagattcgcacctaatcacttccc-gtgtaatttctatctaagacacaccta 17395709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 687
Target Start/End: Original strand, 8944737 - 8944876
Alignment:
Q  546 tcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataaaa-tattagtttgaagtccctacgtaaactacctccggttta 644  Q
    |||||||||| |||||||||| ||||||    |||  || |||||||||| ||||||| | |||||||||||||  ||| | ||||| ||||| ||||||    
T  8944737 tcggtgcaacatcacctacatttgggggttaccaaattaggaaggaaatctactataatagtattagtttgaag--cctgcataaacaacctctggttta 8944834  T
Q  645 caggtttcgcacctaatcactacccggtgatatttctatctaa 687  Q
    |  | ||||||||||||||||| || |||||||||||||||||    
T  8944835 ctagcttcgcacctaatcacta-cctgtgatatttctatctaa 8944876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 497 - 645
Target Start/End: Complemental strand, 17841348 - 17841201
Alignment:
Q  497 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaacca-gttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 595  Q
    ||||| |||||| ||| || |||||| |||||||||||  |||| || |||||  |||||||||| ||||| |||||||||  ||||   ||||||| ||    
T  17841348 ttaaaataaattacagtaagtaaatgacacaagttatt--ctaatcaagttcgtggcaacgtcacatacatatgggggcatcaaagcctggaaggaagtc 17841251  T
Q  596 gactataaaa-tattagtttgaagtccctacgtaaactacctccggtttac 645  Q
     ||||||| | |||||||||||||||  ||||||||| |||||||||||||    
T  17841250 cactataatagtattagtttgaagtca-tacgtaaacaacctccggtttac 17841201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 603
Target Start/End: Original strand, 20186609 - 20186668
Alignment:
Q  544 gttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa 603  Q
    |||||||||| ||||||||||||||||||||||| |||  | ||| |||||| |||||||    
T  20186609 gttcggtgcagcgtcacctacatctgggggcattaaagtcaggaatgaaatccactataa 20186668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 573
Target Start/End: Complemental strand, 28645858 - 28645793
Alignment:
Q  509 gcagaaattaaatggcacaagttatttgctaacca-gttcggtgcaacgtcacctacatctggggg 573  Q
    ||||||| |||| |||||| |||||||  |||||| |||| ||||||||||||||||||| |||||    
T  28645858 gcagaaagtaaaaggcacatgttatttattaaccaagttctgtgcaacgtcacctacatccggggg 28645793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 474 - 687
Target Start/End: Complemental strand, 38802483 - 38802268
Alignment:
Q  474 caacacaattaacaaataacaag-ttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctggg 571  Q
    |||||||| |||||| ||||||  || |||||||||| ||||| || |||| ||||||||||||  || |||||| ||| |||| |||||||||||||||    
T  38802483 caacacaaataacaattaacaaacttgaagtaaattgtagaaaatagatggtacaagttatttgtaaatccagtttggtacaacatcacctacatctggg 38802384  T
Q  572 ggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtccctacgtaaactacctccggtttacaggt-ttcgcacctaatcactaccc 669  Q
    ||||| ||||    |||||||||| ||||||| | |||||||||||||| | || ||||||  ||||| ||||||  || ||||||||||||||||| ||    
T  38802383 ggcatccaagtctggaaggaaatccactataatagtattagtttgaagt-cttatgtaaacagcctccagtttacctgtcttcgcacctaatcactatcc 38802285  T
Q  670 ggtgatatttctatctaa 687  Q
     |||||||||||||||||    
T  38802284 -gtgatatttctatctaa 38802268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Original strand, 24482317 - 24482350
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    |||||| |||||||||||||||||||||||||||    
T  24482317 ccagtttggtgcaacgtcacctacatctgggggc 24482350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 5189 - 5099
Alignment:
Q  279 ttagcattaattacggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggatt 369  Q
    ||||||||||||| |||||| ||||| ||||  || |||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||    
T  5189 ttagcattaattatggattaaggaggaaaaataaggagtgattaggacaacactgccagcacatcaaatctggcttttatagtaaaggatt 5099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 5383 - 5323
Alignment:
Q  226 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcatt 286  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |||||    
T  5383 tgaaaggtcatcagatcaaaggctgagatttagggtgtggttggcagatgggatttgcatt 5323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 524 - 621
Target Start/End: Complemental strand, 8831 - 8732
Alignment:
Q  524 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgactataa-aatattagtttgaagtcc 621  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||||||| ||| ||||| | |||| ||||| ||||||| | ||||||||||||||||    
T  8831 cacaagatatttgttaacccagtacggtgcaacgtcacctacatctggggacatccaagccaggaagaaaatctactataatagtattagtttgaagtcc 8732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 574
Target Start/End: Complemental strand, 2238 - 2205
Alignment:
Q  541 ccagttcggtgcaacgtcacctacatctgggggc 574  Q
    ||||||||||||||| ||||||||||||||||||    
T  2238 ccagttcggtgcaacttcacctacatctgggggc 2205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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