View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026-Insertion-8 (Length: 528)
Name: NF5026-Insertion-8
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 23 - 528
Target Start/End: Original strand, 33388295 - 33388800
Alignment:
| Q |
23 |
attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33388295 |
attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaaccgtgtttgcaagattagatc |
33388394 |
T |
|
| Q |
123 |
tcaaaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctatagcatttccccggttgagttcttccggcacgacc |
222 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388395 |
tcaaaatttcaggataggtctgcggctgaagatcattactgaaacttatttcggtatagagtctatagcatttccccggttgagttcttccggcacgacc |
33388494 |
T |
|
| Q |
223 |
tgatctctggtgtgcactagcctttgatattggagacaccaacaaagactcaacacgagttcggggataataaaccttctgcttggcaaatccagggtca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33388495 |
tgatctctggtgtgcactagcctttgatattggagacaccaacaaagactcaacacgagttcggggattataaaccttctgcttggcaaatccagggtca |
33388594 |
T |
|
| Q |
323 |
ataacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaactggaggcg |
422 |
Q |
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| T |
33388595 |
ataacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaactggaggcg |
33388694 |
T |
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| Q |
423 |
gagctggctcaaaaatcttctgctgcatagctgggggaagggtggaatacagtgataacactttcacagggcccaccttctcccctaaatttgcaacttt |
522 |
Q |
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| T |
33388695 |
gagctggctcaaaaatcttctgctgcatagctgggggaagggtagaatacagtgataacactttcacagggcccaccttctcccctaaatttgcaacttt |
33388794 |
T |
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| Q |
523 |
gtttga |
528 |
Q |
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|||||| |
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| T |
33388795 |
gtttga |
33388800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 26 - 521
Target Start/End: Original strand, 38779339 - 38779834
Alignment:
| Q |
26 |
aaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatctca |
125 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |
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| T |
38779339 |
aaggtttcaggggcaggagggtccatgaagtcaaaatgaactaaatcatctatacccagtttcttcaatgtaagaactgtgttggcaagattagatctca |
38779438 |
T |
|
| Q |
126 |
aaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctatagcatttccccggttgagttcttccggcacgacctga |
225 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||| ||||||||||||| ||||||||||| ||||| || || |
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| T |
38779439 |
aaatttcaggataggtctgcggctgaagatcattattgaaacttctttcggtataaagtctaaagcatttccccggctgagttcttccagcacgtccaga |
38779538 |
T |
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| Q |
226 |
tctctggtgtgcactagcctttgatattggagacaccaacaaagactcaacacgagttcggggataataaaccttctgcttggcaaatccagggtcaata |
325 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || | ||| ||||||||||| ||||||||||| |||||| |
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| T |
38779539 |
cctctggtgtgcactagcttttgatattggagacaccaacaaagactcaacacgaactcgagggttatagaccttctgcttagcaaatccaggatcaata |
38779638 |
T |
|
| Q |
326 |
acatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaactggaggcggag |
425 |
Q |
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||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| |
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| T |
38779639 |
acatagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccacaatcttccttccaggggggcctccctccttaactggaggtggag |
38779738 |
T |
|
| Q |
426 |
ctggctcaaaaatcttctgctgcatagctgggggaagggtggaatacagtgataacactttcacagggcccaccttctcccctaaatttgcaactt |
521 |
Q |
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||||||||||||||||||| ||||||||||||||||| || ||||| | || | |||||||||||||||||| ||||| | |||||||||| |
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| T |
38779739 |
ctggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacggctttcacagggcccacctggtcccccatgtttgcaactt |
38779834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 23 - 499
Target Start/End: Complemental strand, 20816809 - 20816333
Alignment:
| Q |
23 |
attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatc |
122 |
Q |
| |
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||||||||||| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||| |
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| T |
20816809 |
attaaggtttctggtgcaggagggtccataaagtcaaaatgtactaaatcgtctatacccaatttcttcaaagtaagaactgtgttggcgagattagatc |
20816710 |
T |
|
| Q |
123 |
tcaaaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctatagcatttccccggttgagttcttccggcacgacc |
222 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||| |||||||||| ||||| |||||||| ||||| || |
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| T |
20816709 |
tcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaagcatttccctggttgtgttcttccagcacgccc |
20816610 |
T |
|
| Q |
223 |
tgatctctggtgtgcactagcctttgatattggagacaccaacaaagactcaacacgagttcggggataataaaccttctgcttggcaaatccagggtca |
322 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||| || | ||||||||||||||| || |||||||||||| |
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| T |
20816609 |
agatctctgaaccgcactagcctttgatattggagacaccaataaagactcaacacgagctcgagggttataaaccttctgcttagccaatccagggtca |
20816510 |
T |
|
| Q |
323 |
ataacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaactggaggcg |
422 |
Q |
| |
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| |||||| |||||||||| || ||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| | |
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| T |
20816509 |
acaacatagactataccattgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaactggaggtg |
20816410 |
T |
|
| Q |
423 |
gagctggctcaaaaatcttctgctgcatagctgggggaagggtggaatacagtgataacactttcacagggcccacc |
499 |
Q |
| |
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||||||||||||||||| | || |||||||| |||||||| || ||||||| | || |||||||||||||||||| |
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| T |
20816409 |
gagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccacc |
20816333 |
T |
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