View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5026_high_1 (Length: 631)

Name: NF5026_high_1
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5026_high_1
NF5026_high_1
[»] chr6 (12 HSPs)
chr6 (54-147)||(1831209-1831304)
chr6 (41-142)||(15603721-15603824)
chr6 (52-141)||(11680417-11680508)
chr6 (81-147)||(1131873-1131939)
chr6 (88-149)||(13758522-13758583)
chr6 (106-149)||(15060267-15060310)
chr6 (81-147)||(22012054-22012121)
chr6 (106-141)||(26817743-26817778)
chr6 (105-147)||(1423078-1423120)
chr6 (81-147)||(18675452-18675518)
chr6 (81-147)||(34043643-34043710)
chr6 (81-147)||(20990538-20990604)
[»] chr2 (10 HSPs)
chr2 (30-147)||(31548801-31548920)
chr2 (52-147)||(25621891-25621987)
chr2 (106-149)||(6883759-6883802)
chr2 (106-147)||(7444046-7444087)
chr2 (228-336)||(31548615-31548723)
chr2 (81-147)||(44322160-44322227)
chr2 (81-147)||(6221485-6221552)
chr2 (81-147)||(33015131-33015198)
chr2 (81-147)||(44313981-44314048)
chr2 (81-147)||(2554155-2554221)
[»] chr4 (9 HSPs)
chr4 (52-149)||(10142585-10142684)
chr4 (56-145)||(13957694-13957785)
chr4 (81-149)||(52460640-52460708)
chr4 (92-149)||(25201776-25201833)
chr4 (106-149)||(3665085-3665128)
chr4 (109-145)||(24611029-24611065)
chr4 (81-147)||(10094960-10095027)
chr4 (52-143)||(42511284-42511377)
chr4 (106-147)||(31915592-31915633)
[»] chr8 (9 HSPs)
chr8 (30-148)||(23231934-23232054)
chr8 (56-149)||(9381777-9381872)
chr8 (52-149)||(11648049-11648148)
chr8 (81-147)||(1981695-1981762)
chr8 (81-147)||(16729829-16729895)
chr8 (52-149)||(602067-602166)
chr8 (106-147)||(7263571-7263612)
chr8 (228-332)||(11647869-11647973)
chr8 (147-183)||(23231934-23231970)
[»] chr7 (10 HSPs)
chr7 (52-149)||(8113441-8113540)
chr7 (52-139)||(43178549-43178638)
chr7 (106-147)||(20394724-20394765)
chr7 (52-145)||(24441602-24441697)
chr7 (81-147)||(8389237-8389304)
chr7 (106-148)||(9420803-9420845)
chr7 (81-143)||(21863958-21864020)
chr7 (106-149)||(3123703-3123746)
chr7 (81-147)||(13754214-13754280)
chr7 (106-147)||(35477916-35477957)
[»] chr3 (7 HSPs)
chr3 (52-149)||(44879887-44879986)
chr3 (53-149)||(47185419-47185517)
chr3 (81-149)||(33100367-33100435)
chr3 (89-147)||(15760966-15761025)
chr3 (81-147)||(19157192-19157259)
chr3 (81-147)||(27941454-27941521)
chr3 (81-147)||(52448242-52448308)
[»] chr1 (12 HSPs)
chr1 (52-149)||(12028198-12028297)
chr1 (81-149)||(9023523-9023591)
chr1 (106-147)||(44310772-44310813)
chr1 (105-149)||(42055752-42055796)
chr1 (52-147)||(48646364-48646465)
chr1 (114-147)||(23664046-23664079)
chr1 (107-147)||(5208382-5208422)
chr1 (81-147)||(21906478-21906545)
chr1 (81-147)||(34307384-34307451)
chr1 (81-147)||(48596290-48596357)
chr1 (147-184)||(42055752-42055789)
chr1 (114-146)||(25095299-25095331)
[»] chr5 (17 HSPs)
chr5 (81-149)||(13820548-13820616)
chr5 (54-149)||(43170958-43171055)
chr5 (106-145)||(29789921-29789960)
chr5 (106-149)||(37135209-37135252)
chr5 (81-147)||(5578547-5578613)
chr5 (30-145)||(8805959-8806076)
chr5 (105-147)||(26402397-26402439)
chr5 (106-147)||(5120439-5120480)
chr5 (106-147)||(39537338-39537379)
chr5 (81-145)||(29150696-29150760)
chr5 (106-149)||(16686673-16686716)
chr5 (81-147)||(23962949-23963016)
chr5 (81-147)||(13490489-13490555)
chr5 (147-184)||(13820548-13820585)
chr5 (228-332)||(6769112-6769216)
chr5 (105-149)||(13825893-13825937)
chr5 (111-147)||(20891066-20891102)
[»] scaffold1266 (1 HSPs)
scaffold1266 (81-149)||(1672-1740)
[»] scaffold0385 (1 HSPs)
scaffold0385 (52-149)||(1036-1135)
[»] scaffold0263 (1 HSPs)
scaffold0263 (81-149)||(18278-18346)
[»] scaffold0116 (1 HSPs)
scaffold0116 (118-149)||(41108-41139)
[»] scaffold1364 (1 HSPs)
scaffold1364 (105-149)||(1230-1274)


Alignment Details
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 1831209 - 1831304
Alignment:
Q  54 ttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||||||||||||||||||||| ||   ||||| ||||||||||| ||||| |||||||||||||||||| || |||||||||||||||||||||    
T  1831209 ttttttggtgttattattcttagatgctaaaatttcagtctacttcgcagatgttattgttctctacttctgcggtattttattttgttttggtgt 1831304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 15603824 - 15603721
Alignment:
Q  41 tagtaatgtaaacttttttggtgttattattcttaggtg--taaattgcagtctacttcacagatattattgttctctacttctacgatattttattttg 138  Q
    |||||||||||| ||||||||||||||||||||||||||   ||||| || | |||||  ||| |  |||||||||||||||||| ||||||||||||||    
T  15603824 tagtaatgtaaagttttttggtgttattattcttaggtgctaaaatttcaatttactttgcaggtgctattgttctctacttctatgatattttattttg 15603725  T
Q  139 tttt 142  Q
    ||||    
T  15603724 tttt 15603721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 11680508 - 11680417
Alignment:
Q  52 acttttttggtgttattattcttaggtgtaaat--tgcagtctacttcacagatattattgttctctacttctacgatattttattttgttt 141  Q
    ||||||||||||||||||||||||||||| |||  | |||| |||||| ||  |  ||||||||| ||||||||||||||||||||||||||    
T  11680508 acttttttggtgttattattcttaggtgttaatatttcagtatacttcgcatgtgctattgttctatacttctacgatattttattttgttt 11680417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 1131873 - 1131939
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||| || |||||||||||  || |||| |||||||||||||||||||||||||||||||||||||    
T  1131873 aaatttcaatctacttcacatgtactatttttctctacttctacgatattttattttgttttggtgt 1131939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 13758583 - 13758522
Alignment:
Q  88 agtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||||||||||||  |  |||||||||||||||||||| ||||||||| |||||||||||||    
T  13758583 agtctacttcacatgtgctattgttctctacttctacggtattttattctgttttggtgtct 13758522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 15060267 - 15060310
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  15060267 tattgttctctacttctatggtattttattttgttttggtgtct 15060310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 22012121 - 22012054
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| |||||||||||||| ||  |||| ||||||||||||||| || |||||||||||||||||||    
T  22012121 aaatttcagtctacttcacatatgctatttttctctacttctacggtatttttattttgttttggtgt 22012054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 26817743 - 26817778
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttt 141  Q
    ||||||||||||||||||||||||||||||||||||    
T  26817743 tattgttctctacttctacgatattttattttgttt 26817778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 1423078 - 1423120
Alignment:
Q  105 ttattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||| ||||||||| |||||||||||||||||||||||||||    
T  1423078 ttatttttctctactcctacgatattttattttgttttggtgt 1423120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 18675452 - 18675518
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||| ||||||||||| ||  | ||||| ||||||||| || ||||||||||||||||||||||||    
T  18675452 aaatttcagtctacttcgcatgtgttatttttctctactcctgcgatattttattttgttttggtgt 18675518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 34043643 - 34043710
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| ||||||||||||||  |  |||| ||||||||||||||| || |||||||||||||||||||    
T  34043643 aaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 34043710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 20990538 - 20990604
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||| ||||||||||| ||  |  |||| |||||||||| |||||||||| |||||||||||||||    
T  20990538 aaatttcagtctacttcgcatgtgctatttttctctacttgtacgatatttcattttgttttggtgt 20990604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 31548920 - 31548801
Alignment:
Q  30 tgagacgcgtttagtaatgtaaacttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgat 127  Q
    |||||||  ||||||||||| ||||||||| |||||||||||||| ||||   ||||| ||||||||||| ||  |  |||||||||||||||||| |||    
T  31548920 tgagacgaatttagtaatgtcaactttttttgtgttattattctttggtggtaaaatttcagtctacttcgcaagtgctattgttctctacttctatgat 31548821  T
Q  128 attttattttgttttggtgt 147  Q
    ||||||||||||||||||||    
T  31548820 attttattttgttttggtgt 31548801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 25621891 - 25621987
Alignment:
Q  52 acttttttggtgttattattcttaggt--gtaaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||| |||||||||||||||||| ||    ||||| ||||||||||||||   ||||||||||| ||||| ||||||||||||||||||||||||||    
T  25621891 actttgttggtgttattattcttaagttctaaaatttcagtctacttcaca-tgattattgttctatacttttacgatattttattttgttttggtgt 25621987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 6883759 - 6883802
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  6883759 tattgttctctacttctacgatatcttattttgttttggtgtct 6883802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 7444046 - 7444087
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgt 147  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  7444046 tatttttctctacttctacgatattttattttgttttggtgt 7444087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 336
Target Start/End: Complemental strand, 31548723 - 31548615
Alignment:
Q  228 gaaatgaagacctaacaaaatcaaaacaatgagcttatgaaatttaagatgtattatgcaagagactcttttatcatattatgtttaagacatgtaaaac 327  Q
    ||||||||||||||| ||||| | |||||||| || |  || |||   |||||||||| ||| ||| ||||| |||||||| || |||||| ||||||||    
T  31548723 gaaatgaagacctaataaaataacaacaatgaactaaaaaagtttgttatgtattatgtaagggacccttttctcatattaagtctaagacctgtaaaac 31548624  T
Q  328 tctagaaac 336  Q
    |||||||||    
T  31548623 tctagaaac 31548615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 44322227 - 44322160
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| |||||||||||||| ||  |||| ||||||||||||||| || |||||||||||||||||||    
T  44322227 aaatttcagtctacttcacatatgctatttttctctacttctacggtatttttattttgttttggtgt 44322160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 6221485 - 6221552
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| ||||||||||||||  |  |||| ||||||||||||||| || |||||||||||||||||||    
T  6221485 aaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 6221552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 33015198 - 33015131
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| ||||||||||||||  |  |||| ||||||||||||||| || |||||||||||||||||||    
T  33015198 aaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 33015131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 44314048 - 44313981
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| ||||||||||||||  |  |||| ||||||||||||||| || |||||||||||||||||||    
T  44314048 aaatttcagtctacttcacatttgctatttttctctacttctacggtatttttattttgttttggtgt 44313981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 2554155 - 2554221
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||| ||||||||||||||  |  |||| |||||||||| || ||||||| |||||||||||||||    
T  2554155 aaatttcagtctacttcacatgtgctatttttctctacttgtaggatatttcattttgttttggtgt 2554221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 10142585 - 10142684
Alignment:
Q  52 acttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||||||||||||||||||||| |||||   ||||| ||||||||||||||  |  ||||||||| ||||||||||| ||||||||||||||||||||||    
T  10142585 acttttttggtgttattattctcaggtgctaaaatttcagtctacttcacatgtgctattgttctatacttctacgacattttattttgttttggtgtct 10142684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 13957694 - 13957785
Alignment:
Q  56 ttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggt 145  Q
    ||||||| ||||||||||||||||   ||||| ||||||||||  ||  |  ||||||||| ||||||||||||||||||||||||||||||    
T  13957694 ttttggtattattattcttaggtgctcaaatttcagtctactttgcacgtgctattgttctatacttctacgatattttattttgttttggt 13957785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 52460640 - 52460708
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||| ||||||||||| ||  | ||||||||||||||||||||| ||||||||||||||| |||||||    
T  52460640 aaatttcagtctacttcgcatgtgttattgttctctacttctacggtattttattttgtttcggtgtct 52460708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 25201776 - 25201833
Alignment:
Q  92 tacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||||| || ||||||||||||||||||||||| |||||||| |||| |||||||||    
T  25201776 tacttcaaaggtattattgttctctacttctacggtattttatcttgtgttggtgtct 25201833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 3665128 - 3665085
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  3665128 tattgttctctacttctatggtattttattttgttttggtgtct 3665085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 24611065 - 24611029
Alignment:
Q  109 tgttctctacttctacgatattttattttgttttggt 145  Q
    ||||||||||||||||| |||||||||||||||||||    
T  24611065 tgttctctacttctacggtattttattttgttttggt 24611029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 10095027 - 10094960
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| ||||||||||||||  |  |||| ||||||||||||||| || |||||||||||||||||||    
T  10095027 aaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 10094960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 42511377 - 42511284
Alignment:
Q  52 acttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttg 143  Q
    ||||||||||||||| |||| |||||||   ||||| ||||||||||  |   |  ||||||||| |||||||||||||||||||| |||||||    
T  42511377 acttttttggtgttaatatttttaggtgctaaaatttcagtctactttgcgtgtgctattgttctatacttctacgatattttattatgttttg 42511284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 31915592 - 31915633
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||||| |||||||||| | |||||||||||||||||||||    
T  31915592 tattgttgtctacttctatggtattttattttgttttggtgt 31915633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 23232054 - 23231934
Alignment:
Q  30 tgagacgcgtttagtaatgtaaacttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgat 127  Q
    |||||| | ||||||||||| ||| ||||| ||||||||||||||||||    ||||| |||| ||||||  || | ||||||||||||||||||||| |    
T  23232054 tgagacacatttagtaatgtcaaccttttttgtgttattattcttaggtactaaaatttcagtatacttcgtaggtgttattgttctctacttctacggt 23231955  T
Q  128 attttattttgttttggtgtc 148  Q
    |||||||||| ||||||||||    
T  23231954 attttattttattttggtgtc 23231934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 9381872 - 9381777
Alignment:
Q  56 ttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||| |||||||||||||||||||   ||||| ||||||||||| ||  |  ||||||||| ||||||||||||| ||||||||||||||||||||    
T  9381872 tttttgtgttattattcttaggtgctaaaatttcagtctacttcgcatgtgctattgttctatacttctacgatactttattttgttttggtgtct 9381777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 11648148 - 11648049
Alignment:
Q  52 acttttttggtgttattattcttaggtg--taaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||||||||||||||||||||||||||   ||||| ||||||||||| ||  | ||||||||| |||||| ||   |||||||||||||||| ||||||    
T  11648148 acttttttggtgttattattcttaggtgctaaaatttcagtctacttcgcatgtgttattgttcactacttttatagtattttattttgtttttgtgtct 11648049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 1981695 - 1981762
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| |||||||||||||| ||  |||| |||||||||||||||||| |||||||||||||||||||    
T  1981695 aaatttcagtctacttcacatatgctatttttctctacttctacgatatttttattttgttttggtgt 1981762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 16729829 - 16729895
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||| ||||||||||| ||  |  |||| |||||||||||||||||||||||||||||||||||||    
T  16729829 aaatttcagtctacttcgcatgtgctatttttctctacttctacgatattttattttgttttggtgt 16729895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 602166 - 602067
Alignment:
Q  52 acttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||||||||||||||||||||||| ||   |||||  ||  |||||   ||||  |||||||||||||||| || |||||||||||||||||| |||||    
T  602166 acttttttggtgttattattcttagttgctaaaatttaagcttactttgtagatgctattgttctctacttcaacaatattttattttgttttgttgtct 602067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 7263612 - 7263571
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgt 147  Q
    |||| |||||||||| |||||||||| |||||||||||||||    
T  7263612 tatttttctctacttgtacgatatttcattttgttttggtgt 7263571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 11647973 - 11647869
Alignment:
Q  228 gaaatgaagacctaacaaaatcaaaacaatgagcttatgaaatttaagatgtattatgcaagagactcttttatcatattatgtttaagacatgtaaaac 327  Q
    ||||||||||||||| ||||||| |||| ||| || ||    |||| |||||||||||  || | ||||||| ||||||||||| ||||   ||||||||    
T  11647973 gaaatgaagacctaataaaatcataacagtgaactaattttttttatgatgtattatgttaggggctcttttctcatattatgtctaaggtctgtaaaac 11647874  T
Q  328 tctag 332  Q
    |||||    
T  11647873 tctag 11647869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 23231970 - 23231934
Alignment:
Q  147 tctcaacttctacggtattttattttcttttggtgtc 183  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  23231970 tctctacttctacggtattttattttattttggtgtc 23231934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 8113540 - 8113441
Alignment:
Q  52 acttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||||||| |||||||||||||||||||   ||||| |||| |||||| ||  | |||||||||| ||||||||| ||||||||||||||||||||||||    
T  8113540 actttttttgtgttattattcttaggtgctaaaatttcagtgtacttcgcatgtgttattgttctatacttctacaatattttattttgttttggtgtct 8113441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 43178638 - 43178549
Alignment:
Q  52 acttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgt 139  Q
    ||||||||||||||||| |||||||||||  |||||| ||| ||||||| || |  ||||||||| |||| |||||||||||||||||||    
T  43178638 acttttttggtgttattgttcttaggtgttaaaattgtagtttacttcataggtgctattgttctttactcctacgatattttattttgt 43178549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 20394765 - 20394724
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgt 147  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  20394765 tatttttctctacttctacgatattttattttgttttggtgt 20394724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 24441697 - 24441602
Alignment:
Q  52 acttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggt 145  Q
    ||||||||| |||||||||||||||||||  | ||| |||||||||| |||  |  ||||||||| |||||||| ||||||||||| | |||||||    
T  24441697 acttttttgctgttattattcttaggtgttaatatttcagtctactttacatgtgctattgttctatacttctatgatattttattctattttggt 24441602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 8389304 - 8389237
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| ||||||||||||||  | ||||| ||||||||||||||| || |||||||||||||||||||    
T  8389304 aaatttcagtctacttcacatgtgttatttttctctacttctacggtatttttattttgttttggtgt 8389237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 9420803 - 9420845
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgtc 148  Q
    |||||||||||||||||||||||||||||| ||| ||||||||    
T  9420803 tattgttctctacttctacgatattttattatgtgttggtgtc 9420845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 21863958 - 21864020
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttg 143  Q
    ||||| || |||||||| ||| |  |||||||||||||||||||| |||||||||||||||||    
T  21863958 aaatttcactctacttcgcaggtgctattgttctctacttctacggtattttattttgttttg 21864020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 3123746 - 3123703
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||||| |||| ||||||| |||||||||||||||||||||||    
T  3123746 tattgttatctatttctacggtattttattttgttttggtgtct 3123703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 13754214 - 13754280
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||| ||||||||||| ||  |  |||| |||||||||| |||||||||| |||||||||||||||    
T  13754214 aaatttcagtctacttcgcatgtgctatttttctctacttgtacgatatttcattttgttttggtgt 13754280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 35477957 - 35477916
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgt 147  Q
    |||| |||||||||| |||||||||| |||||||||||||||    
T  35477957 tatttttctctacttgtacgatatttcattttgttttggtgt 35477916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 44879887 - 44879986
Alignment:
Q  52 acttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||| |||||||||||||||||||||||   |||||  |||||||||| ||  | |||||||||| ||||||||| ||||||||||||||||||||||||    
T  44879887 acttgtttggtgttattattcttaggtgctaaaattttagtctacttcgcatgtgttattgttctatacttctacaatattttattttgttttggtgtct 44879986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 47185419 - 47185517
Alignment:
Q  53 cttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||| ||||||||||||||||||||||  ||||| ||||||||||||||  |  ||||||||| || |||||||||||||||| |||||||| |||||    
T  47185419 cttttctggtgttattattcttaggtgtcaaaatttcagtctacttcacatttgctattgttctatatttctacgatattttatgttgttttgatgtct 47185517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 33100435 - 33100367
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||| ||||||||||| ||  | ||||||||||||| ||||| |  ||||||||||||||||||||||    
T  33100435 aaatttcagtctacttcgcatgtgttattgttctctatttctaaggcattttattttgttttggtgtct 33100367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 15760966 - 15761025
Alignment:
Q  89 gtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||||||||||  | ||||| ||||||||||||||| || |||||||||||||||||||    
T  15760966 gtctacttcacatgtgttatttttctctacttctacggtatttttattttgttttggtgt 15761025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 19157192 - 19157259
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| ||||||||||||||  |  |||| ||||||||||||||| || |||||||||||||||||||    
T  19157192 aaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 19157259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 27941521 - 27941454
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| ||||||||||||||  |  |||| ||||||||||||||| || |||||||||||||||||||    
T  27941521 aaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 27941454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 52448242 - 52448308
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||| ||||||||||| ||  |  |||| |||||||||| |||||||||| |||||||||||||||    
T  52448242 aaatttcagtctacttcgcatgtgctatttttctctacttgtacgatatttcattttgttttggtgt 52448308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 12028198 - 12028297
Alignment:
Q  52 acttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||||||||||||||||||| |||||||   ||||| ||||||||||||||  | || ||||||| |||||||| |||||||||||||||||| ||||||    
T  12028198 acttttttggtgttattatttttaggtgctaaaatttcagtctacttcacatgtgttgttgttctatacttctaggatattttattttgtttttgtgtct 12028297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 9023523 - 9023591
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||| |||| |||||| ||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  9023523 aaatttcagtatacttcgcatgtattattgttctctacttttacgatattttattttgttttggtgtct 9023591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 44310772 - 44310813
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44310772 tattgttctctacttctacgatattttattttgttttggtgt 44310813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 42055796 - 42055752
Alignment:
Q  105 ttattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  42055796 ttattgttctctacttctacggtattttattttgttttggtgtct 42055752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 48646364 - 48646465
Alignment:
Q  52 acttttttggtgttattattcttaggtg-taaattgcagtctacttcacaga---tattat--tgttctctacttctacgatattttattttgttttggt 145  Q
    |||||||||||||||||||||||||||| |||| |  |||||| ||| || |   ||||||  |||||| |||||||||||||||||||||||| |||||    
T  48646364 acttttttggtgttattattcttaggtgctaaaatttagtctatttcgcataatctattatattgttctatacttctacgatattttattttgtgttggt 48646463  T
Q  146 gt 147  Q
    ||    
T  48646464 gt 48646465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 23664079 - 23664046
Alignment:
Q  114 tctacttctacgatattttattttgttttggtgt 147  Q
    ||||||||||||||||||||||||||||||||||    
T  23664079 tctacttctacgatattttattttgttttggtgt 23664046  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 5208422 - 5208382
Alignment:
Q  107 attgttctctacttctacgatattttattttgttttggtgt 147  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  5208422 attgttctatacttctacgatattttattttattttggtgt 5208382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 21906478 - 21906545
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| ||||||||||||||  |  |||| ||||||||||||||| || |||||||||||||||||||    
T  21906478 aaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 21906545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 34307451 - 34307384
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| || |||||||||||  |  |||| |||||||||||||||||| |||||||||||||||||||    
T  34307451 aaatttcattctacttcacatgtgctatttttctctacttctacgatatttttattttgttttggtgt 34307384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 48596357 - 48596290
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| ||||||||||||||  |  |||| ||||||||||||||| || |||||||||||||||||||    
T  48596357 aaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 48596290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 42055789 - 42055752
Alignment:
Q  147 tctcaacttctacggtattttattttcttttggtgtct 184  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  42055789 tctctacttctacggtattttattttgttttggtgtct 42055752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 25095299 - 25095331
Alignment:
Q  114 tctacttctacgatattttattttgttttggtg 146  Q
    ||||||| |||||||||||||||||||||||||    
T  25095299 tctacttttacgatattttattttgttttggtg 25095331  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 13820616 - 13820548
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||| ||||||||||||||  | || |||||||||||||||||| |||||||||||||||||||||||    
T  13820616 aaatttcagtctacttcacatgtgttgttgttctctacttctacggtattttattttgttttggtgtct 13820548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 43171055 - 43170958
Alignment:
Q  54 ttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||||| |||||||||||||||||||   ||||| ||||||||||| ||  |  ||||||||  | ||||||||||||||||||||||||||||||||    
T  43171055 ttttttcgtgttattattcttaggtgctaaaattacagtctacttcgcatgtgctattgttccatgcttctacgatattttattttgttttggtgtct 43170958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 29789921 - 29789960
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggt 145  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  29789921 tattgttctatacttctacgatattttattttgttttggt 29789960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 37135209 - 37135252
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  37135209 tattgttctctacttctaagatattttatgttgttttggtgtct 37135252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 5578613 - 5578547
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||| ||||||||||  || ||  |||| |||||||||| ||||||||||||||||||||||||||    
T  5578613 aaatttcagtctactttgcatatgctatttttctctacttttacgatattttattttgttttggtgt 5578547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 8806076 - 8805959
Alignment:
Q  30 tgagacgcgtttagtaatgtaaacttttttggtgttattattcttaggtg--taaattgcagtctacttcacagatattattgttctctacttctacgat 127  Q
    |||||||| ||||||||||| ||||||||| ||||||||| |||||||||   ||| | |||| ||  |   || |  ||||||| |||||||||||| |    
T  8806076 tgagacgcatttagtaatgtcaactttttttgtgttattactcttaggtgctaaaacttcagtatatgttgaaggtgctattgttatctacttctacggt 8805977  T
Q  128 attttattttgttttggt 145  Q
    ||||||||||||||||||    
T  8805976 attttattttgttttggt 8805959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 26402397 - 26402439
Alignment:
Q  105 ttattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
T  26402397 ttattgttcgctacttctacggtattttattttgttttggtgt 26402439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 5120480 - 5120439
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  5120480 tattgttctatacttctacggtattttattttgttttggtgt 5120439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 39537379 - 39537338
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgt 147  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  39537379 tatttttctctacttctaagatattttattttgttttggtgt 39537338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 29150696 - 29150760
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggt 145  Q
    ||||| ||||||||||| ||  | |||||| ||||||||| |||| |||||||||||||||||||    
T  29150696 aaatttcagtctacttcgcaagtgttattgctctctacttttacggtattttattttgttttggt 29150760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 16686716 - 16686673
Alignment:
Q  106 tattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||    
T  16686716 tattgttctatacttatacggtattttattttgttttggtgtct 16686673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 23962949 - 23963016
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgata-ttttattttgttttggtgt 147  Q
    ||||| ||||||||||||||  |  |||| ||||||||||||||| || |||||||||||||||||||    
T  23962949 aaatttcagtctacttcacatgtgctatttttctctacttctacggtatttttattttgttttggtgt 23963016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 13490489 - 13490555
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgt 147  Q
    ||||| ||||||||||| ||  |  |||| |||| ||||||||||| ||||||||||||||||||||    
T  13490489 aaatttcagtctacttcgcatgtgctatttttctatacttctacgacattttattttgttttggtgt 13490555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 13820585 - 13820548
Alignment:
Q  147 tctcaacttctacggtattttattttcttttggtgtct 184  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  13820585 tctctacttctacggtattttattttgttttggtgtct 13820548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 6769216 - 6769112
Alignment:
Q  228 gaaatgaagacctaacaaaatcaaaacaatgagcttatgaaatttaagatgtattatgcaagagactcttttatcatattatgtttaagacatgtaaaac 327  Q
    |||| |||||||| | ||||||| ||||||||||| |  ||| ||| ||||||||||  ||| |   ||||| |||||||||| ||||| | ||||||||    
T  6769216 gaaaagaagacctgataaaatcacaacaatgagctaaaaaaaattatgatgtattatctaaggggaccttttctcatattatgcttaaggcctgtaaaac 6769117  T
Q  328 tctag 332  Q
    |||||    
T  6769116 tctag 6769112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 13825937 - 13825893
Alignment:
Q  105 ttattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||||||||||||||| |||| |||||| ||||||||| ||||||    
T  13825937 ttattgttctctacttttacggtattttgttttgtttttgtgtct 13825893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 20891102 - 20891066
Alignment:
Q  111 ttctctacttctacgatattttattttgttttggtgt 147  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  20891102 ttctttacttctacaatattttattttgttttggtgt 20891066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 1672 - 1740
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||| |||||||||||| |  | ||||||||||||||||||||| |||||||||||| |||| |||||    
T  1672 aaatttcagtctacttcataagtgttattgttctctacttctacggtattttattttggtttgctgtct 1740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 1036 - 1135
Alignment:
Q  52 acttttttggtgttattattcttaggtgt--aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||||| ||||||||||||||||||| |  |||||  |||||||||  ||  |  ||||||||| || ||||| |||||||||||||||||||||||||    
T  1036 actttttgggtgttattattcttaggttttaaaattttagtctactttgcatgtgctattgttctatatttctatgatattttattttgttttggtgtct 1135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 18346 - 18278
Alignment:
Q  81 aaattgcagtctacttcacagatattattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    ||||| |||||||||||| |  | ||||||||||||||||||| | |||||||||||| |||| |||||    
T  18346 aaatttcagtctacttcataagtgttattgttctctacttctatggtattttattttggtttgctgtct 18278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 149
Target Start/End: Original strand, 41108 - 41139
Alignment:
Q  118 cttctacgatattttattttgttttggtgtct 149  Q
    ||||||||||||||||||||||||||||||||    
T  41108 cttctacgatattttattttgttttggtgtct 41139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1364 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 1230 - 1274
Alignment:
Q  105 ttattgttctctacttctacgatattttattttgttttggtgtct 149  Q
    |||||||| |||||||||||| |||||||||||| |||| |||||    
T  1230 ttattgttttctacttctacggtattttattttggtttgatgtct 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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