View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026_high_14 (Length: 256)
Name: NF5026_high_14
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 17903975 - 17903822
Alignment:
| Q |
11 |
cagagaaatagaaaaatggttgaaaggaaaggctatgccttttttgatggaaaatctaagttaaataattcttgtccaagacgagtggaaatgtgttgtt |
110 |
Q |
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| T |
17903975 |
cagagaaatagaaaaatggttgaaaggaaaggctatgccttttttgttggaaaatctaagttaaataattcttgtccaagacgagtggaaatgtgttgtt |
17903876 |
T |
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| Q |
111 |
aagatagcagagttaattaatttggaagcttccattccccaaaattaaccagag |
164 |
Q |
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| T |
17903875 |
aagatagcagagttaattaatttggaagcttccattccccaaaattaaccagag |
17903822 |
T |
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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 17903267 - 17903219
Alignment:
| Q |
185 |
accctatccttttatcctttaattatcaacacatttccttacaagttga |
233 |
Q |
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| T |
17903267 |
accctatccttttatcctttaattatcaacacatttccttacaagttga |
17903219 |
T |
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