View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5026_high_20 (Length: 232)
Name: NF5026_high_20
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 20950809 - 20950615
Alignment:
| Q |
38 |
tgttatggtaataaaaatatatttaatccattattctatttca-----ttatttgtttactgaaatattaattcatctgtattatgttgacaataggtta |
132 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| | |
|
|
| T |
20950809 |
tgttatggtactaaaaatatatttaatcaattattctatttcaatgttttatttgtttactgaaatattaattcatgtgtattatgttgaaaataggtga |
20950710 |
T |
|
| Q |
133 |
aagactctggaccagaaatcaacctgccaaatttaaagctatgggtgattagtgcttttctaaaccaaggatttgaattcataccttcttctcac |
227 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
20950709 |
aagactctggaccagaaattaacctgccaaatttaaagctatgggtgattagtgcttttctaaaccaaggctttgaattcataccttcttttcac |
20950615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 35474992 - 35475068
Alignment:
| Q |
138 |
tctggaccagaaatcaacctgccaaatttaaagctatgggtgattagtgcttttctaaaccaaggatttgaattcat |
214 |
Q |
| |
|
|||| ||||||||| ||||| | |||||| |||||||||||| | ||||| || | |||||||| ||||||||||| |
|
|
| T |
35474992 |
tctgaaccagaaatgaaccttcaaaatttgaagctatgggtggctggtgctcttttgaaccaaggctttgaattcat |
35475068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University