View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5026_high_21 (Length: 223)
Name: NF5026_high_21
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 31252103 - 31251900
Alignment:
| Q |
1 |
cacaaattccttttgattatatgattaattaacatctaattgattcttatctcatttcattaccatgtataaaatcactccattagatgataaagttagg |
100 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31252103 |
cacaaattccttttgattctatgatttattaacatctaattgattcttatctcatttcattaccatgtataaaatcactccattagatgataaagttagg |
31252004 |
T |
|
| Q |
101 |
tgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31252003 |
tgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagaattccaaa |
31251904 |
T |
|
| Q |
201 |
caga |
204 |
Q |
| |
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|||| |
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| T |
31251903 |
caga |
31251900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 25815041 - 25815243
Alignment:
| Q |
1 |
cacaaattccttttgattatatgattaattaacatctaattgattcttatctcatttcattaccatgtataaaatcactccattagatgataaagttagg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
25815041 |
cacaaattccttttgattttatgattaattaacatcta-ttgattcttatctcatttcattaccatgtataaaatgaccccattagatgataaagttagg |
25815139 |
T |
|
| Q |
101 |
tgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25815140 |
tgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaa |
25815239 |
T |
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| Q |
201 |
caga |
204 |
Q |
| |
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|||| |
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| T |
25815240 |
caga |
25815243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 23052820 - 23052912
Alignment:
| Q |
2 |
acaaattccttttgattatatgattaattaacatctaattgattcttatctcatttcattaccatgtataaaatcactccattagatgataaa |
94 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
23052820 |
acaaatttattttgattttatgattaattaacatctaattgattctcatctcattccatcaccatgtataaaatcacctcattagatgataaa |
23052912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 23052912 - 23052961
Alignment:
| Q |
125 |
aagttttatgcagttttggaatgctacccctaataaatcaccacttttgtg |
175 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||| |||| |
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| T |
23052912 |
aagttttatgcagttttggaatggt-cccctaataaatcaccacttgtgtg |
23052961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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