View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5026_high_3 (Length: 482)
Name: NF5026_high_3
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Original strand, 4633998 - 4634454
Alignment:
| Q |
14 |
gacatcatctatggtttttgagccggcagcggtacttagcctaattgtttacatcaaaacatgacagtagaatttgta-tgctcatcaaatcatcaatag |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4633998 |
gacatcaactatggtttttgagccggcagcgctacttagcctaattgtttacatcaaaacatgacagtagaatttgtaatgctcatcaaatcatcaatag |
4634097 |
T |
|
| Q |
113 |
tagaatatatcacacaccctttgtctctagcaagcagaagcnnnnnnnnnn---tcccagctttacacaatgtatttaacttgtagcttcttcacttgct |
209 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
4634098 |
tagaatatatcacacaccccttgtttctagcaagcagaagcaaaaaaaaaaaaatcccagctttaca--atgtatttaacttttagcttcttcacttgct |
4634195 |
T |
|
| Q |
210 |
ataaccaatccttgtatgcactttacatttcaaataacctgcaaaaatgacaataaatgccttaccacaaatttacaattacagataaactgaacattta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4634196 |
ataaccaatccttgtatgcactttacatttcaaataacctgcaaaaatgacaataaatgccttaccacaaatttacaattacagataaactgaacattta |
4634295 |
T |
|
| Q |
310 |
aaatctctggaaaatgaactcttacccaatagcatagtcagaaatccaagccactcaaacaacctctatcataggatcactatctacaactacttgtcga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4634296 |
aaatctctggaaaatgaactcttacccaatagcatagtcagaaatccaagccactcaaaccacctctatcataggatcactatctacaactacttgtcaa |
4634395 |
T |
|
| Q |
410 |
caaaatttagtttgtataatctgcctactcaaannnnnnncagtttacattgaactatt |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
4634396 |
caaaatttagtttgtataatctgcctactcaaatttttttcaatttacattgaactatt |
4634454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 15 - 436
Target Start/End: Original strand, 660335 - 660741
Alignment:
| Q |
15 |
acatcatctatggtttttgagccggcagcggtacttagcctaattgtttacatcaaaacatgacagtagaatttgtatgctcatcaaatcatcaatagta |
114 |
Q |
| |
|
|||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
660335 |
acatcaaccatggtttttgagccggcagcgctacttagcctaattgtttacaacaaaacatgacagtagaatttgtatgctcatcaaatcatcaatagta |
660434 |
T |
|
| Q |
115 |
gaatatatcacacaccctttgtctctagcaagcagaagcnnnnnnnnnntcccagctttacacaatgtatttaacttgtagcttcttcacttgctataac |
214 |
Q |
| |
|
|||||||| | |||||| ||||||||||||||||||||| |||||||||| |||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
660435 |
gaatatatgatacaccccttgtctctagcaagcagaagc--aaaaaaaatcccagcttt--acaatgtatttagcttttagcttcttcacttgctataac |
660530 |
T |
|
| Q |
215 |
caatccttgtatgcactttacatttcaaataacctgcaaaaatgacaataaatgccttaccacaaatttacaattacagataaactgaacatttaaaatc |
314 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| | |
|
|
| T |
660531 |
caatccttgtatgcactttacatttaagataacctgcagaaatgacaataaatgctttaccacaaatttacaattacagataaattgagcatttaaaaac |
660630 |
T |
|
| Q |
315 |
tctggaaaatgaactcttacccaatagcatagtcagaaatccaagccactcaaacaacctctatcataggatcactatctacaactacttgtcgacaaaa |
414 |
Q |
| |
|
| |||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |||| |||||| |
|
|
| T |
660631 |
t----------aactcttacccaatggcatattcagaaatccaagccactcaaaccacct-tatcacaggatcactatctacaactacctgtcaacaaaa |
660719 |
T |
|
| Q |
415 |
tttagtttgtataatctgccta |
436 |
Q |
| |
|
||| ||| ||||||||| |||| |
|
|
| T |
660720 |
tttggttggtataatcttccta |
660741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University