View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5026_high_4 (Length: 447)

Name: NF5026_high_4
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5026_high_4
NF5026_high_4
[»] chr3 (6 HSPs)
chr3 (263-431)||(22345676-22345844)
chr3 (60-168)||(22345942-22346050)
chr3 (1-57)||(22346129-22346185)
chr3 (261-317)||(7414750-7414806)
chr3 (273-381)||(19128151-19128259)
chr3 (269-305)||(31734134-31734170)
[»] chr2 (2 HSPs)
chr2 (288-385)||(4506691-4506788)
chr2 (272-334)||(10734557-10734619)
[»] chr8 (1 HSPs)
chr8 (269-330)||(9050040-9050101)
[»] chr6 (3 HSPs)
chr6 (280-345)||(5933212-5933277)
chr6 (269-319)||(23585692-23585742)
chr6 (270-327)||(3165489-3165546)
[»] chr5 (4 HSPs)
chr5 (287-328)||(28187453-28187494)
chr5 (280-319)||(27146131-27146170)
chr5 (269-386)||(7873063-7873180)
chr5 (280-317)||(10809535-10809572)
[»] scaffold0110 (2 HSPs)
scaffold0110 (270-367)||(13399-13498)
scaffold0110 (270-367)||(21136-21235)
[»] chr1 (3 HSPs)
chr1 (280-335)||(3078905-3078960)
chr1 (299-330)||(46344013-46344044)
chr1 (348-385)||(6261949-6261986)
[»] chr7 (1 HSPs)
chr7 (273-317)||(5066366-5066410)
[»] chr4 (1 HSPs)
chr4 (280-384)||(19390416-19390520)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 263 - 431
Target Start/End: Complemental strand, 22345844 - 22345676
Alignment:
Q  263 tcaccatgagtttgactaaatcacagtgacaccgtgattttgttaaagcttcaaagtgtaatttttgtgaaaaccactgtggcatatcgtgattctgtca 362  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  22345844 tcaccgtgagtttgactaaatcactgtgacaccgtgattttgttgaagcttcgaagtgtaatttttgtcaaaaccacagtggcatatggtgattctgtca 22345745  T
Q  363 aactcgctgtcaatccaaacatgttgttgtgtaatttctctaagattattttctcacctgtctcacttg 431  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  22345744 aactcgctgtcaatccagacacgttgttgtgtaatttctctaagattattttctcatctgtctcacttg 22345676  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 22346050 - 22345942
Alignment:
Q  60 ctagtgatagtgtgtagaatgtttttctctataaaaggatgtttctgtgtcttgttatgttgtcacttgcctataaactaggttcatagactagggttta 159  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22346050 ctagtggtagtgtgtagaatgtttttctctataaaaggatgtttctgtgtcttgttatgttgtcacttgcctatatactaggttcatagactagggttta 22345951  T
Q  160 ttttggttg 168  Q
    |||||||||    
T  22345950 ttttggttg 22345942  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22346185 - 22346129
Alignment:
Q  1 attttgagatcaaaatttgaaatgatagtaatggattttaattggaaaaatggcttg 57  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22346185 attttgagatcaaaatttgaaatggtagtaatggattttaattggaaaaatggcttg 22346129  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 7414806 - 7414750
Alignment:
Q  261 aatcaccatgagtttgactaaatcacagtgacaccgtgattttgttaaagcttcaaa 317  Q
    |||||| ||||||||||| |||||||||| ||||  |||||||||| || |||||||    
T  7414806 aatcacaatgagtttgacaaaatcacagtaacactctgattttgttgaaacttcaaa 7414750  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 381
Target Start/End: Complemental strand, 19128259 - 19128151
Alignment:
Q  273 tttgactaaatcacagtgacaccgtgattttgttaaagcttcaaagtgtaatttttgtgaaaaccactgtggcatatcgtgattctgtcaaactcgctgt 372  Q
    |||||| |||||||||| ||| ||| |||||||| || || || ||| ||  |||||| ||||||||  |||||| || ||||||||||| |||||  ||    
T  19128259 tttgacaaaatcacagtaacaacgtaattttgttgaaactacacagtatagcttttgtcaaaaccacattggcatgtcatgattctgtcacactcgtagt 19128160  T
Q  373 caatccaaa 381  Q
    || ||||||    
T  19128159 cattccaaa 19128151  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 31734134 - 31734170
Alignment:
Q  269 tgagtttgactaaatcacagtgacaccgtgattttgt 305  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  31734134 tgagtttgactaaatcacagcgacacagtgattttgt 31734170  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 385
Target Start/End: Original strand, 4506691 - 4506788
Alignment:
Q  288 gtgacaccgtgattttgttaaagcttcaaagtgtaatttttgtgaaaaccactgtggcatatcgtgattctgtcaaactcgctgtcaatccaaacatg 385  Q
    |||||||  |||||||||| ||||||||||||||| ||| ||  |||| ||| |||||||  ||||||| ||||||| || | |||||||||||||||    
T  4506691 gtgacactctgattttgtttaagcttcaaagtgtagtttctgccaaaatcacagtggcatgccgtgattatgtcaaattcaccgtcaatccaaacatg 4506788  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 10734557 - 10734619
Alignment:
Q  272 gtttgactaaatcacagtgacaccgtgattttgttaaagcttcaaagtgtaatttttgtgaaa 334  Q
    ||||||| |||||||| |||||||||||||||||| ||||| ||||||| | |||||| ||||    
T  10734557 gtttgacaaaatcacaatgacaccgtgattttgttgaagctccaaagtgcagtttttgcgaaa 10734619  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 9050101 - 9050040
Alignment:
Q  269 tgagtttgactaaatcacagtgacaccgtgattttgttaaagcttcaaagtgtaatttttgt 330  Q
    |||||||||| ||||||||||||||| || |||||||| || || ||||||||| |||||||    
T  9050101 tgagtttgacgaaatcacagtgacacggtcattttgttgaaactccaaagtgtagtttttgt 9050040  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 5933212 - 5933277
Alignment:
Q  280 aaatcacagtgacaccgtgattttgttaaagcttcaaagtgtaatttttgtgaaaaccactgtggc 345  Q
    ||||||| || |||| ||||||||||||||||| |||||| |||||||||| |||| ||| |||||    
T  5933212 aaatcacggtaacactgtgattttgttaaagctacaaagtataatttttgtcaaaatcacagtggc 5933277  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 23585692 - 23585742
Alignment:
Q  269 tgagtttgactaaatcacagtgacaccgtgattttgttaaagcttcaaagt 319  Q
    |||||||||| |||||||||||||| | |||||||||| ||| ||||||||    
T  23585692 tgagtttgacaaaatcacagtgacaacatgattttgttgaagtttcaaagt 23585742  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 3165489 - 3165546
Alignment:
Q  270 gagtttgactaaatcacagtgacaccgtgattttgttaaagcttcaaagtgtaatttt 327  Q
    ||||||||| ||||||   ||||||||||||||||||||||||  |||||| ||||||    
T  3165489 gagtttgacaaaatcatgatgacaccgtgattttgttaaagctcaaaagtgaaatttt 3165546  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 28187453 - 28187494
Alignment:
Q  287 agtgacaccgtgattttgttaaagcttcaaagtgtaattttt 328  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  28187453 agtggcaccgtgattttgttaaagcttgaaagtgtaattttt 28187494  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 27146131 - 27146170
Alignment:
Q  280 aaatcacagtgacaccgtgattttgttaaagcttcaaagt 319  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  27146131 aaatcacagtgacaccatgattttgttaaagctccaaagt 27146170  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 386
Target Start/End: Original strand, 7873063 - 7873180
Alignment:
Q  269 tgagtttgactaaatcacagtgacaccgtgattttgttaaagcttcaaagtgtaatttttgtgaaaaccactgtggcatatcgtgattctgtcaaactcg 368  Q
    |||||||||  |||| || |||||||| |||||||||| |||||  ||| ||||| |||||| ||||  || ||||   | ||||||| ||| ||||||     
T  7873063 tgagtttgataaaattacggtgacaccatgattttgttgaagctataaaatgtaacttttgtcaaaattacagtggttcaccgtgattatgttaaactca 7873162  T
Q  369 ctgtcaatccaaacatgt 386  Q
    | ||||||||||||||||    
T  7873163 ccgtcaatccaaacatgt 7873180  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 10809535 - 10809572
Alignment:
Q  280 aaatcacagtgacaccgtgattttgttaaagcttcaaa 317  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  10809535 aaatcacagggacaccgtgattttgttgaagcttcaaa 10809572  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 367
Target Start/End: Complemental strand, 13498 - 13399
Alignment:
Q  270 gagtttgactaaatcacagtgacacc--gtgattttgttaaagcttcaaagtgtaatttttgtgaaaaccactgtggcatatcgtgattctgtcaaactc 367  Q
    ||||||||| ||||||||||  ||||  ||||||||||| |||||||||| |||| ||||||   ||| |||| ||||| ||||||||| || |||||||    
T  13498 gagtttgacgaaatcacagttgcaccttgtgattttgttgaagcttcaaaatgtagtttttggcgaaatcactatggcacatcgtgattgtgacaaactc 13399  T

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Target: scaffold0110; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 367
Target Start/End: Complemental strand, 21235 - 21136
Alignment:
Q  270 gagtttgactaaatcacagtgacacc--gtgattttgttaaagcttcaaagtgtaatttttgtgaaaaccactgtggcatatcgtgattctgtcaaactc 367  Q
    ||||||||| ||||||||||  ||||  ||||||||||| |||||||||| |||| ||||||   ||| |||| ||||| ||||||||| || |||||||    
T  21235 gagtttgacgaaatcacagttgcaccttgtgattttgttgaagcttcaaaatgtagtttttggcgaaatcactatggcacatcgtgattgtgacaaactc 21136  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 3078905 - 3078960
Alignment:
Q  280 aaatcacagtgacaccgtgattttgttaaagcttcaaagtgtaatttttgtgaaaa 335  Q
    ||||||||||| || | ||||| |||| ||||||||||||||||||||||| ||||    
T  3078905 aaatcacagtgccatcatgattctgttgaagcttcaaagtgtaatttttgtcaaaa 3078960  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 330
Target Start/End: Complemental strand, 46344044 - 46344013
Alignment:
Q  299 attttgttaaagcttcaaagtgtaatttttgt 330  Q
    ||||||||||||||||||||||||||||||||    
T  46344044 attttgttaaagcttcaaagtgtaatttttgt 46344013  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 385
Target Start/End: Original strand, 6261949 - 6261986
Alignment:
Q  348 atcgtgattctgtcaaactcgctgtcaatccaaacatg 385  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  6261949 atcgtgattctgtcaaactcgccgtcaattcaaacatg 6261986  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 5066366 - 5066410
Alignment:
Q  273 tttgactaaatcacagtgacaccgtgattttgttaaagcttcaaa 317  Q
    |||||| |||||| |||||||| ||||||||||| ||||||||||    
T  5066366 tttgacaaaatcagagtgacactgtgattttgttgaagcttcaaa 5066410  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 384
Target Start/End: Original strand, 19390416 - 19390520
Alignment:
Q  280 aaatcacagtgacaccgtgattttgttaaagcttcaaagtgtaatttttgtgaaaaccactgtggcatatcgtgattctgtcaaactcgctgtcaatcca 379  Q
    ||||||||||  ||||||||||||||| |||||||||| |||   |||||  |||| ||| || ||| || |||||| ||||||||||  ||||| || |    
T  19390416 aaatcacagtagcaccgtgattttgttgaagcttcaaattgttgcttttgataaaatcacagttgcacattgtgattttgtcaaactcattgtcagtcta 19390515  T
Q  380 aacat 384  Q
    |||||    
T  19390516 aacat 19390520  T

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