View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5026_high_5 (Length: 435)
Name: NF5026_high_5
Description: NF5026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5026_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 24 - 423
Target Start/End: Original strand, 22598462 - 22598862
Alignment:
| Q |
24 |
gagagatacttgagtgaccctccagaaaacgatgatccaagctttgacattcttacttggtggaagaaaaaatgtgttcgttaccctgttttggcaacag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
22598462 |
gagagatacttgagtgaccctccagaaaacgatgatccaagctttgacattcttacttggtggaagaaaaactgtgttcgttaccctgttttggcaacaa |
22598561 |
T |
|
| Q |
124 |
tggttagagatgtgttggccacaccagtatcatcagttgcttcggagagcgcttttggcaccaggggaaagattttagacacatataggagctcgttgag |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||| |||||||||||||||||||||||| ||||| |
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|
| T |
22598562 |
tggttagagatgtgttggccacaccagtatcatcagttgcttcggagagcgcatttagcaccggaggaaggattttagacacatataggagctcattgag |
22598661 |
T |
|
| Q |
224 |
tctggaaatggcggaagctttgatttgtactcagaattggctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaagagtatgagctgttg |
323 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22598662 |
tccggaaatggcggaagctttgatttgtactcagaattggctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaagagtatgagctgttg |
22598761 |
T |
|
| Q |
324 |
gaaaatg-tgtggcaggtaaattattaatttgtcaataaattcgtatttttattatgcgtatttgatattgcttaattatttgacttgtttctcatatat |
422 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22598762 |
gaaaatgttgtggcaggtaaattattattttgtcaataaattcgtatttttattatgcgtatttgatattgcttaattatttgacttgtttctcatatat |
22598861 |
T |
|
| Q |
423 |
t |
423 |
Q |
| |
|
| |
|
|
| T |
22598862 |
t |
22598862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 24 - 423
Target Start/End: Complemental strand, 6837982 - 6837582
Alignment:
| Q |
24 |
gagagatacttgagtgaccctccagaaaacgatgatccaagctttgacattcttacttggtggaagaaaaaatgtgttcgttaccctgttttggcaacag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6837982 |
gagagatacttgagtgaccctccagaaaacgatgatccaagctttgacattcttacttggtggaagaaaaactgtgttcgttaccctgttttggcaacaa |
6837883 |
T |
|
| Q |
124 |
tggttagagatgtgttggccacaccagtatcatcagttgcttcggagagcgcttttggcaccaggggaaagattttagacacatataggagctcgttgag |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||| |||||||||||||||||||||||| ||||| |
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|
| T |
6837882 |
tggttagagatgtgttggccacaccagtatcatcagttgcttcggagagcgcatttagcaccggaggaaggattttagacacatataggagctcattgag |
6837783 |
T |
|
| Q |
224 |
tctggaaatggcggaagctttgatttgtactcagaattggctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaagagtatgagctgttg |
323 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
6837782 |
tccggaaatggcggaagctttgatttgtactcagaattggctgaaaccatcttttgtcgacttcaaagatctaaatttgagtgaagagtatgagttgttg |
6837683 |
T |
|
| Q |
324 |
gaaaatg-tgtggcaggtaaattattaatttgtcaataaattcgtatttttattatgcgtatttgatattgcttaattatttgacttgtttctcatatat |
422 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6837682 |
gaaaatgttgtggcaggtaaattattattttgtcaataaattcgtatttttattatgcgtatttgatattgcttaattatttgacttgtttctcatatat |
6837583 |
T |
|
| Q |
423 |
t |
423 |
Q |
| |
|
| |
|
|
| T |
6837582 |
t |
6837582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 24 - 423
Target Start/End: Original strand, 16000827 - 16001227
Alignment:
| Q |
24 |
gagagatacttgagtgaccctccagaaaacgatgatccaagctttgacattcttacttggtggaagaaaaaatgtgttcgttaccctgttttggcaacag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16000827 |
gagagatacttgagtgaccctccagaaaacgatgatccaagctttgacattcttacttggtggaagaaaaactgtgttcgttaccctgttttggcaacaa |
16000926 |
T |
|
| Q |
124 |
tggttagagatgtgttggccacaccagtatcatcagttgcttcggagagcgcttttggcaccaggggaaagattttagacacatataggagctcgttgag |
223 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
16000927 |
tggttagagatgtgttggccacacctgtatcatcagttgcttcggagagcgcatttagcacccggggaaggattttagacacatatagaagctcattgag |
16001026 |
T |
|
| Q |
224 |
tctggaaatggcggaagctttgatttgtactcagaattggctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaagagtatgagctgttg |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16001027 |
tctggaaatggcggaagctttgatttgtactcagaattggctgaaaccatctttcgtcaacttcaaagatctaaatttgagtgaagagtatgagctgttg |
16001126 |
T |
|
| Q |
324 |
gaaaatg-tgtggcaggtaaattattaatttgtcaataaattcgtatttttattatgcgtatttgatattgcttaattatttgacttgtttctcatatat |
422 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16001127 |
gaaaatgttgtggcaggtaaattattaatttttcaataaattcgtatttttattatgcgcatttgatattgcttaattatttgacttgtttctcatatat |
16001226 |
T |
|
| Q |
423 |
t |
423 |
Q |
| |
|
| |
|
|
| T |
16001227 |
t |
16001227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 17435907 - 17435835
Alignment:
| Q |
151 |
tatcatcagttgcttcggagagcgcttttggcaccaggggaaagattttagacacatataggagctcgttgagt |
224 |
Q |
| |
|
|||||||||||||||| ||||| | ||| |||| | |||||| |||||||||||||||||||||| |||||| |
|
|
| T |
17435907 |
tatcatcagttgcttcttagagcacatttagcac-attggaaaggttttagacacatataggagctcattgagt |
17435835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 32 - 423
Target Start/End: Original strand, 22347910 - 22348302
Alignment:
| Q |
32 |
cttgagtgaccctccagaaaacgatgatccaagctttgacattcttacttggtggaagaaaaaatgtgttcgttaccctgttttggcaacagtggttaga |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |
|
|
| T |
22347910 |
cttgagtgaccctccagaaaacgatgatccacgctttgacattcttacttggtggaagaaaaactatgttcgttaccctgttttggcaacaatggttaga |
22348009 |
T |
|
| Q |
132 |
gatgtgttggccacaccagtatcatcagttgcttcggagagcgcttttggcaccaggggaaagattttagacacatataggagctcgttgagtctggaaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||| ||| |||| |||||| |||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
22348010 |
gatgtgttggccacaccagtatcatcagttgctttgaagagcgcatttagcactgggggaaggattttagacacatatagaagctcattgagtccggaaa |
22348109 |
T |
|
| Q |
232 |
tggcggaagctttgatttgtactcagaattggctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaagagtatgagctgttggaaaatg- |
330 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22348110 |
tggcggaagctttgatttgtactcaaaattggctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaagagtgtgagctgttggaaaatgt |
22348209 |
T |
|
| Q |
331 |
tgtggcaggtaaattattaatttgtcaataaattcgtatttttattatgcgtatttgatattgcttaattatttgacttgtttctcatatatt |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22348210 |
tgtggcaggtaaattattaatttgtcaataaattcgtatttttattatgcgtatttgatattgcttaattatttgacttgtttctcatatatt |
22348302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 50 - 423
Target Start/End: Complemental strand, 306763 - 306405
Alignment:
| Q |
50 |
aaacgatgatccaagctttgacattcttacttggtggaagaaaaaatgtgttcgttaccctgttttggcaacagtggttagagatgtgttggccacacca |
149 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
306763 |
aaacaatggtccaagctttgacattcttacttggtggaagaaaaactgtgttcgttatcctgttttggcaacaatggttagagatgtcttggccacacca |
306664 |
T |
|
| Q |
150 |
gtatcatcagttgcttcggagagcgcttttggcaccaggggaaagattttagacacatataggagctcgttgagtctggaaatggcggaagctttgattt |
249 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||| |||||| |||||||||| ||||||||||| | |||||| |||||| | |
|
|
| T |
306663 |
gtatcatcagtttcttcggagagcgcatttagcaccgggggaaggattttagacccatataggagcccattgagttcggaaat----------------t |
306580 |
T |
|
| Q |
250 |
gtactcagaattggctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaagagtatgagctgttggaaaatgt-gtggcaggtaaattatt |
348 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
306579 |
gtactcagaattggttgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaaaagtatgagctgttgaaaaatgttgtggcaggtaaattatt |
306480 |
T |
|
| Q |
349 |
aatttgtcaataaattcgtatttttattatgcgtatttgatattgcttaattatttgacttgtttctcatatatt |
423 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
306479 |
aatttgtcaataaattcatatttttattatgcgtatttgatattgcttaattatttgacttgtttctcatatatt |
306405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 13308429 - 13308547
Alignment:
| Q |
196 |
ttttagacacatataggagctcgttgagtctggaaatggcggaagctttgatttgtactcagaattggctgaaaccatctttcgtcgacttcaaagatct |
295 |
Q |
| |
|
|||||||||||||||||||||| |||| || | |||||| ||||||||||| ||| ||| |||||||| ||||| |||||| | |||||||||||||| |
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|
| T |
13308429 |
ttttagacacatataggagctccttgaatccgacaatggctgaagctttgatatgttgtcaaaattggctaaaaccttctttcattgacttcaaagatct |
13308528 |
T |
|
| Q |
296 |
aaatttgagtgaagagtat |
314 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13308529 |
taatttgagtgaagagtat |
13308547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 111 - 319
Target Start/End: Complemental strand, 14593225 - 14593017
Alignment:
| Q |
111 |
gttttggcaacagtggttagagatgtgttggccacaccagtatcatcagttgcttcggagagcgcttttggcaccaggggaaagattttagacacatata |
210 |
Q |
| |
|
||||||||| || |||||| |||| ||||||||| | || ||| | |||||||| || ||||| ||| |||| | |||| ||||||||||||||| |
|
|
| T |
14593225 |
gttttggcagcaatggttacagattgtttggccacatcggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacatata |
14593126 |
T |
|
| Q |
211 |
ggagctcgttgagtctggaaatggcggaagctttgatttgtactcagaattggctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaaga |
310 |
Q |
| |
|
|||| || ||||||| | |||||| ||||||||||| ||| ||| ||||| || ||||| | |||| | |||||||||||||| |||||||||||||| |
|
|
| T |
14593125 |
ggagttccttgagtccgacaatggctgaagctttgatatgttgtcaaaattgactaaaaccttttttcattgacttcaaagatcttaatttgagtgaaga |
14593026 |
T |
|
| Q |
311 |
gtatgagct |
319 |
Q |
| |
|
|||| |||| |
|
|
| T |
14593025 |
gtatcagct |
14593017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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